Wall clock time and date at job start Tue Mar 31 2020 03:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46946 * 2 1 4 4 H 1.08999 * 109.47228 * 54.16027 * 3 2 1 5 5 C 1.50700 * 109.47530 * 174.16269 * 3 2 1 6 6 H 1.07997 * 120.00265 * 115.09972 * 5 3 2 7 7 C 1.37873 * 119.99640 * 295.10741 * 5 3 2 8 8 N 1.31517 * 120.00186 * 348.35429 * 7 5 3 9 9 Si 1.86804 * 120.00089 * 168.36689 * 7 5 3 10 10 H 1.48500 * 109.47453 * 89.99142 * 9 7 5 11 11 H 1.48499 * 109.47156 * 209.99412 * 9 7 5 12 12 H 1.48503 * 109.46775 * 329.99226 * 9 7 5 13 13 N 1.46902 * 109.47139 * 294.16271 * 3 2 1 14 14 C 1.46898 * 111.00423 * 156.29129 * 13 3 2 15 15 H 1.08996 * 109.47198 * 34.76526 * 14 13 3 16 16 C 1.53003 * 109.47058 * 274.76763 * 14 13 3 17 17 C 1.50696 * 109.47222 * 154.77003 * 14 13 3 18 18 O 1.21285 * 120.00300 * 359.97438 * 17 14 13 19 19 N 1.34776 * 120.00085 * 180.02562 * 17 14 13 20 20 C 1.46495 * 120.00275 * 179.97438 * 19 17 14 21 21 C 1.47196 * 112.85097 * 50.33293 * 20 19 17 22 22 N 7.81271 * 82.89447 * 312.32651 * 2 1 3 23 23 C 1.53784 * 113.61731 * 279.13567 * 20 19 17 24 24 C 1.53949 * 87.02279 * 220.04647 * 23 20 19 25 25 C 1.53779 * 113.61640 * 181.52923 * 20 19 17 26 26 H 1.08999 * 109.47278 * 186.55206 * 1 2 3 27 27 H 1.08996 * 109.47760 * 306.55700 * 1 2 3 28 28 H 1.09007 * 109.47025 * 66.56017 * 1 2 3 29 29 H 1.08993 * 109.47631 * 239.99559 * 2 1 3 30 30 H 1.09005 * 109.46890 * 119.99229 * 2 1 3 31 31 H 0.96996 * 119.99641 * 359.85071 * 8 7 5 32 32 H 1.00905 * 110.99738 * 32.33606 * 13 3 2 33 33 H 1.08994 * 109.47298 * 184.82504 * 16 14 13 34 34 H 1.08996 * 109.47211 * 304.83154 * 16 14 13 35 35 H 1.09006 * 109.46792 * 64.82368 * 16 14 13 36 36 H 0.97001 * 119.99856 * 0.02562 * 19 17 14 37 37 H 1.09004 * 113.60890 * 334.57369 * 23 20 19 38 38 H 1.08998 * 113.61434 * 105.46780 * 23 20 19 39 39 H 1.08994 * 113.53801 * 270.80832 * 24 23 20 40 40 H 1.09004 * 113.74140 * 139.93750 * 24 23 20 41 41 H 1.09002 * 113.61963 * 254.53168 * 25 20 19 42 42 H 1.09001 * 113.61982 * 25.34808 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5938 1.9856 0.8331 5 6 3.5400 1.4451 0.1445 6 1 4.1594 1.8139 -0.6597 7 6 4.1217 0.9766 1.3034 8 7 3.3796 0.7434 2.3639 9 14 5.9638 0.6733 1.3674 10 1 6.6539 1.9096 1.8152 11 1 6.2514 -0.4274 2.3218 12 1 6.4506 0.2965 0.0160 13 7 1.6687 2.0932 -1.2637 14 6 1.6173 3.5531 -1.1090 15 1 2.3877 3.8713 -0.4067 16 6 0.2421 3.9615 -0.5770 17 6 1.8539 4.2084 -2.4452 18 8 2.0468 3.5265 -3.4295 19 7 1.8522 5.5523 -2.5464 20 6 2.0827 6.1895 -3.8453 21 6 1.2260 5.6429 -4.9101 22 7 0.5636 5.2203 -5.7317 23 6 3.5681 6.2768 -4.2337 24 6 3.2602 7.6833 -4.7785 25 6 2.0865 7.7261 -3.7857 26 1 -0.3634 -1.0209 0.1173 27 1 -0.3634 0.6120 0.8254 28 1 -0.3633 0.4088 -0.9429 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 2.4235 0.9032 2.3314 32 1 0.7913 1.7352 -1.6105 33 1 0.1739 5.0488 -0.5432 34 1 -0.5332 3.5690 -1.2349 35 1 0.1061 3.5576 0.4262 36 1 1.6990 6.0978 -1.7590 37 1 4.2437 6.2780 -3.3783 38 1 3.8606 5.5635 -5.0042 39 1 2.9488 7.6870 -5.8230 40 1 4.0385 8.4163 -4.5662 41 1 1.1847 8.1813 -4.1950 42 1 2.3549 8.1245 -2.8072 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581556670.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:41 Heat of formation + Delta-G solvation = 10.303977 kcal Electronic energy + Delta-G solvation = -22336.427171 eV Core-core repulsion = 19124.236916 eV Total energy + Delta-G solvation = -3212.190255 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.59532 -38.57680 -36.53584 -35.79918 -33.71573 -33.05838 -31.54244 -28.79723 -26.32426 -26.12251 -25.73755 -23.64622 -22.69075 -21.52806 -19.96660 -19.84667 -17.78372 -16.96166 -16.60659 -16.12504 -15.13339 -15.10675 -14.68839 -14.31500 -13.84419 -13.71113 -13.57838 -13.17904 -12.96737 -12.77907 -12.68470 -12.44944 -12.21089 -12.16204 -11.96454 -11.91959 -11.63612 -11.26901 -11.13291 -10.99908 -10.82713 -10.72434 -10.50469 -10.15307 -10.06700 -9.91745 -9.29572 -9.18716 -8.68740 -8.33816 -7.30518 -6.31831 -4.00928 2.43012 2.63321 2.95677 3.38422 3.44103 3.50810 3.66411 3.66915 4.12296 4.24094 4.53233 4.54424 4.80368 5.04862 5.14681 5.27612 5.32832 5.36792 5.39423 5.51847 5.55998 5.61063 5.78344 5.84156 5.91897 5.92786 5.95573 6.08450 6.19241 6.26875 6.38553 6.61510 6.77847 6.87161 7.11010 7.34842 7.46473 7.57757 7.99745 8.08494 8.42646 8.52401 8.70536 8.93458 9.67849 11.03200 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.018624 B = 0.004839 C = 0.004210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.054217 B = 5784.375307 C = 6648.703219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C 0.210 3.790 4 H -0.004 1.004 5 C -0.580 4.580 6 H 0.056 0.944 7 C 0.019 3.981 8 N -0.913 5.913 9 Si 1.066 2.934 10 H -0.290 1.290 11 H -0.285 1.285 12 H -0.288 1.288 13 N -0.656 5.656 14 C 0.079 3.921 15 H 0.113 0.887 16 C -0.176 4.176 17 C 0.518 3.482 18 O -0.505 6.505 19 N -0.725 5.725 20 C 0.243 3.757 21 C 0.228 3.772 22 N -0.413 5.413 23 C -0.129 4.129 24 C -0.141 4.141 25 C -0.124 4.124 26 H 0.042 0.958 27 H 0.043 0.957 28 H 0.041 0.959 29 H 0.054 0.946 30 H 0.071 0.929 31 H 0.268 0.732 32 H 0.324 0.676 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.068 0.932 36 H 0.407 0.593 37 H 0.106 0.894 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.179 15.374 -6.639 17.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.165 4.165 3 C 0.103 3.897 4 H 0.013 0.987 5 C -0.619 4.619 6 H 0.074 0.926 7 C -0.184 4.184 8 N -0.550 5.550 9 Si 0.895 3.105 10 H -0.217 1.217 11 H -0.211 1.211 12 H -0.214 1.214 13 N -0.287 5.287 14 C -0.036 4.036 15 H 0.131 0.869 16 C -0.236 4.236 17 C 0.305 3.695 18 O -0.376 6.376 19 N -0.382 5.382 20 C 0.152 3.848 21 C -0.092 4.092 22 N -0.089 5.089 23 C -0.169 4.169 24 C -0.179 4.179 25 C -0.163 4.163 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.142 0.858 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.244 0.756 37 H 0.125 0.875 38 H 0.099 0.901 39 H 0.103 0.897 40 H 0.104 0.896 41 H 0.100 0.900 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -2.167 13.624 -7.841 15.868 hybrid contribution -1.974 0.880 0.251 2.175 sum -4.141 14.504 -7.590 16.886 Atomic orbital electron populations 1.21900 0.98858 1.00261 1.00048 1.21805 0.92034 1.00379 1.02256 1.19327 0.96484 0.89436 0.84450 0.98667 1.21971 0.90753 1.45533 1.03619 0.92570 1.25731 1.06589 0.94140 0.91984 1.70801 1.07999 1.46862 1.29328 0.83595 0.74638 0.76777 0.75509 1.21714 1.21117 1.21395 1.60240 1.36119 0.99986 1.32342 1.21338 0.97710 0.91993 0.92510 0.86891 1.22499 0.97401 1.01338 1.02359 1.21282 0.75150 0.81024 0.92070 1.90694 1.45633 1.62613 1.38649 1.46157 1.76286 1.07347 1.08442 1.18505 0.93221 0.92693 0.80334 1.28282 0.93553 0.93256 0.94069 1.81174 1.09364 1.07517 1.10817 1.23432 0.93532 0.97291 1.02671 1.22851 0.98287 0.97620 0.99151 1.23292 1.00335 0.90704 1.01969 0.93904 0.93757 0.93952 0.92682 0.91043 0.92078 0.85779 0.92395 0.92684 0.91261 0.75617 0.87532 0.90066 0.89743 0.89637 0.89965 0.87381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 9.62 37.16 0.36 -2.47 16 2 C -0.13 -2.86 5.25 -26.73 -0.14 -3.00 16 3 C 0.21 5.00 1.47 -68.86 -0.10 4.90 16 4 H 0.00 -0.10 6.43 -51.93 -0.33 -0.44 16 5 C -0.58 -15.78 8.35 -34.44 -0.29 -16.06 16 6 H 0.06 1.61 7.84 -52.49 -0.41 1.20 16 7 C 0.02 0.53 5.11 -17.82 -0.09 0.44 16 8 N -0.91 -26.22 12.94 55.43 0.72 -25.51 16 9 Si 1.07 24.92 29.92 -169.99 -5.09 19.83 16 10 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 13 N -0.66 -13.98 5.53 -102.17 -0.56 -14.55 16 14 C 0.08 1.39 2.81 -68.87 -0.19 1.19 16 15 H 0.11 2.11 7.58 -51.93 -0.39 1.72 16 16 C -0.18 -2.47 9.11 37.16 0.34 -2.13 16 17 C 0.52 8.72 6.97 -10.99 -0.08 8.65 16 18 O -0.50 -10.68 15.19 5.55 0.08 -10.60 16 19 N -0.73 -8.47 5.17 -49.46 -0.26 -8.73 16 20 C 0.24 2.64 1.18 -133.80 -0.16 2.48 16 21 C 0.23 3.33 12.65 -20.74 -0.26 3.07 16 22 N -0.41 -7.06 18.54 42.18 0.78 -6.28 16 23 C -0.13 -1.26 7.45 -25.83 -0.19 -1.45 16 24 C -0.14 -0.94 7.80 -25.83 -0.20 -1.14 16 25 C -0.12 -0.79 7.34 -25.92 -0.19 -0.98 16 26 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.04 0.72 6.69 -51.93 -0.35 0.38 16 29 H 0.05 1.29 8.14 -51.93 -0.42 0.86 16 30 H 0.07 1.78 6.52 -51.93 -0.34 1.44 16 31 H 0.27 7.63 6.33 -40.82 -0.26 7.37 16 32 H 0.32 6.58 6.31 -39.29 -0.25 6.33 16 33 H 0.06 0.61 7.43 -51.93 -0.39 0.23 16 34 H 0.05 0.77 8.04 -51.93 -0.42 0.36 16 35 H 0.07 1.03 7.50 -51.93 -0.39 0.64 16 36 H 0.41 3.35 8.00 -40.82 -0.33 3.02 16 37 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.08 0.94 8.08 -51.93 -0.42 0.52 16 39 H 0.08 0.59 8.13 -51.93 -0.42 0.16 16 40 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.08 0.48 8.08 -51.93 -0.42 0.06 16 42 H 0.11 0.44 8.13 -51.93 -0.42 0.02 16 LS Contribution 345.53 15.07 5.21 5.21 Total: -1.00 -33.87 345.53 -6.76 -40.63 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -6.44 Total: 6.50 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: -1.20 Total: -6.51 kcal Atomic # 7 Polarization: -55.74 SS G_CDS: 0.68 Total: -55.07 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.08 Total: -10.60 kcal Atomic # 14 Polarization: 24.92 SS G_CDS: -5.09 Total: 19.83 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.87 -6.76 -40.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581556670.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.936 kcal (2) G-P(sol) polarization free energy of solvation -33.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds