Wall clock time and date at job start Tue Mar 31 2020 03:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46946 * 2 1 4 4 H 1.08999 * 109.47228 * 54.16027 * 3 2 1 5 5 C 1.50700 * 109.47530 * 174.16269 * 3 2 1 6 6 H 1.07997 * 120.00265 * 115.09972 * 5 3 2 7 7 C 1.37873 * 119.99640 * 295.10741 * 5 3 2 8 8 N 1.31517 * 120.00186 * 348.35429 * 7 5 3 9 9 Si 1.86804 * 120.00089 * 168.36689 * 7 5 3 10 10 H 1.48500 * 109.47453 * 89.99142 * 9 7 5 11 11 H 1.48499 * 109.47156 * 209.99412 * 9 7 5 12 12 H 1.48503 * 109.46775 * 329.99226 * 9 7 5 13 13 N 1.46902 * 109.47139 * 294.16271 * 3 2 1 14 14 C 1.46898 * 111.00423 * 156.29129 * 13 3 2 15 15 H 1.08996 * 109.47198 * 34.76526 * 14 13 3 16 16 C 1.53003 * 109.47058 * 274.76763 * 14 13 3 17 17 C 1.50696 * 109.47222 * 154.77003 * 14 13 3 18 18 O 1.21285 * 120.00300 * 359.97438 * 17 14 13 19 19 N 1.34776 * 120.00085 * 180.02562 * 17 14 13 20 20 C 1.46495 * 120.00275 * 179.97438 * 19 17 14 21 21 C 1.47196 * 112.85097 * 50.33293 * 20 19 17 22 22 N 7.81271 * 82.89447 * 312.32651 * 2 1 3 23 23 C 1.53784 * 113.61731 * 279.13567 * 20 19 17 24 24 C 1.53949 * 87.02279 * 220.04647 * 23 20 19 25 25 C 1.53779 * 113.61640 * 181.52923 * 20 19 17 26 26 H 1.08999 * 109.47278 * 186.55206 * 1 2 3 27 27 H 1.08996 * 109.47760 * 306.55700 * 1 2 3 28 28 H 1.09007 * 109.47025 * 66.56017 * 1 2 3 29 29 H 1.08993 * 109.47631 * 239.99559 * 2 1 3 30 30 H 1.09005 * 109.46890 * 119.99229 * 2 1 3 31 31 H 0.96996 * 119.99641 * 359.85071 * 8 7 5 32 32 H 1.00905 * 110.99738 * 32.33606 * 13 3 2 33 33 H 1.08994 * 109.47298 * 184.82504 * 16 14 13 34 34 H 1.08996 * 109.47211 * 304.83154 * 16 14 13 35 35 H 1.09006 * 109.46792 * 64.82368 * 16 14 13 36 36 H 0.97001 * 119.99856 * 0.02562 * 19 17 14 37 37 H 1.09004 * 113.60890 * 334.57369 * 23 20 19 38 38 H 1.08998 * 113.61434 * 105.46780 * 23 20 19 39 39 H 1.08994 * 113.53801 * 270.80832 * 24 23 20 40 40 H 1.09004 * 113.74140 * 139.93750 * 24 23 20 41 41 H 1.09002 * 113.61963 * 254.53168 * 25 20 19 42 42 H 1.09001 * 113.61982 * 25.34808 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5938 1.9856 0.8331 5 6 3.5400 1.4451 0.1445 6 1 4.1594 1.8139 -0.6597 7 6 4.1217 0.9766 1.3034 8 7 3.3796 0.7434 2.3639 9 14 5.9638 0.6733 1.3674 10 1 6.6539 1.9096 1.8152 11 1 6.2514 -0.4274 2.3218 12 1 6.4506 0.2965 0.0160 13 7 1.6687 2.0932 -1.2637 14 6 1.6173 3.5531 -1.1090 15 1 2.3877 3.8713 -0.4067 16 6 0.2421 3.9615 -0.5770 17 6 1.8539 4.2084 -2.4452 18 8 2.0468 3.5265 -3.4295 19 7 1.8522 5.5523 -2.5464 20 6 2.0827 6.1895 -3.8453 21 6 1.2260 5.6429 -4.9101 22 7 0.5636 5.2203 -5.7317 23 6 3.5681 6.2768 -4.2337 24 6 3.2602 7.6833 -4.7785 25 6 2.0865 7.7261 -3.7857 26 1 -0.3634 -1.0209 0.1173 27 1 -0.3634 0.6120 0.8254 28 1 -0.3633 0.4088 -0.9429 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 2.4235 0.9032 2.3314 32 1 0.7913 1.7352 -1.6105 33 1 0.1739 5.0488 -0.5432 34 1 -0.5332 3.5690 -1.2349 35 1 0.1061 3.5576 0.4262 36 1 1.6990 6.0978 -1.7590 37 1 4.2437 6.2780 -3.3783 38 1 3.8606 5.5635 -5.0042 39 1 2.9488 7.6870 -5.8230 40 1 4.0385 8.4163 -4.5662 41 1 1.1847 8.1813 -4.1950 42 1 2.3549 8.1245 -2.8072 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000581556670.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:41 Heat of formation + Delta-G solvation = -14.237255 kcal Electronic energy + Delta-G solvation = -22337.491359 eV Core-core repulsion = 19124.236916 eV Total energy + Delta-G solvation = -3213.254443 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.62148 -39.77793 -38.20875 -36.96291 -35.25150 -34.43976 -33.33324 -30.30554 -27.61874 -27.23494 -26.78273 -25.20165 -24.31070 -22.38814 -21.81522 -20.99137 -18.88074 -18.75298 -17.98871 -17.17933 -16.67771 -16.32099 -15.76201 -15.64147 -15.63263 -15.12013 -14.89886 -14.53239 -14.17603 -14.05187 -13.99400 -13.82653 -13.56618 -13.35587 -13.31132 -13.08612 -12.84751 -12.57777 -12.43739 -12.38045 -12.36196 -11.94569 -11.89044 -11.71329 -11.68381 -11.58005 -10.76824 -10.59735 -10.39387 -10.27559 -9.05984 -8.48367 -6.20394 1.31220 1.54591 1.56117 1.63051 1.64226 1.82020 2.28603 2.59425 2.69354 3.22857 3.39604 3.51588 3.56131 3.81183 3.87182 4.10288 4.21990 4.31030 4.31495 4.36718 4.48071 4.68010 4.75737 4.76777 4.79042 4.90011 4.96301 5.00173 5.05265 5.10927 5.12023 5.14634 5.23880 5.31505 5.46367 5.51168 6.03867 6.17003 6.35625 6.44970 6.59925 6.65194 6.92458 7.28141 7.54371 8.84573 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.018624 B = 0.004839 C = 0.004210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.054217 B = 5784.375307 C = 6648.703219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.121 4.121 3 C 0.219 3.781 4 H -0.016 1.016 5 C -0.591 4.591 6 H 0.034 0.966 7 C -0.021 4.021 8 N -0.931 5.931 9 Si 1.106 2.894 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.285 1.285 13 N -0.672 5.672 14 C 0.075 3.925 15 H 0.099 0.901 16 C -0.166 4.166 17 C 0.521 3.479 18 O -0.556 6.556 19 N -0.701 5.701 20 C 0.222 3.778 21 C 0.243 3.757 22 N -0.467 5.467 23 C -0.136 4.136 24 C -0.129 4.129 25 C -0.101 4.101 26 H 0.060 0.940 27 H 0.049 0.951 28 H 0.055 0.945 29 H 0.040 0.960 30 H 0.043 0.957 31 H 0.260 0.740 32 H 0.328 0.672 33 H 0.098 0.902 34 H 0.055 0.945 35 H 0.059 0.941 36 H 0.428 0.572 37 H 0.116 0.884 38 H 0.052 0.948 39 H 0.078 0.922 40 H 0.113 0.887 41 H 0.094 0.906 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.249 17.957 -6.176 19.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.160 4.160 3 C 0.110 3.890 4 H 0.001 0.999 5 C -0.629 4.629 6 H 0.052 0.948 7 C -0.220 4.220 8 N -0.569 5.569 9 Si 0.930 3.070 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.211 1.211 13 N -0.304 5.304 14 C -0.039 4.039 15 H 0.117 0.883 16 C -0.225 4.225 17 C 0.307 3.693 18 O -0.432 6.432 19 N -0.358 5.358 20 C 0.132 3.868 21 C -0.076 4.076 22 N -0.144 5.144 23 C -0.176 4.176 24 C -0.167 4.167 25 C -0.140 4.140 26 H 0.079 0.921 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.147 0.853 33 H 0.117 0.883 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.268 0.732 37 H 0.134 0.866 38 H 0.071 0.929 39 H 0.097 0.903 40 H 0.132 0.868 41 H 0.112 0.888 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -2.262 16.283 -7.363 18.012 hybrid contribution -1.933 0.106 0.067 1.937 sum -4.195 16.389 -7.296 18.424 Atomic orbital electron populations 1.21764 0.95319 1.01746 1.01014 1.21652 0.95210 0.99095 1.00075 1.19083 0.94581 0.90146 0.85145 0.99901 1.22183 0.92610 1.45298 1.02827 0.94797 1.26873 1.09842 0.93609 0.91709 1.70896 1.07759 1.48279 1.29941 0.83050 0.70872 0.77443 0.75620 1.19679 1.20937 1.21091 1.60091 1.36750 1.02466 1.31084 1.21384 0.99477 0.89944 0.93056 0.88304 1.22386 0.94752 1.03974 1.01371 1.21116 0.74696 0.82547 0.90902 1.90682 1.48300 1.64219 1.39954 1.45876 1.74301 1.05713 1.09894 1.19195 0.93347 0.95606 0.78657 1.29058 0.92724 0.91934 0.93890 1.81166 1.11374 1.09269 1.12601 1.23528 0.92599 0.98947 1.02559 1.22832 0.99114 0.95798 0.98937 1.23394 1.00708 0.86130 1.03738 0.92061 0.93236 0.92565 0.94146 0.93797 0.92944 0.85322 0.88346 0.92603 0.92159 0.73202 0.86565 0.92869 0.90321 0.86816 0.88755 0.83900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.08 9.62 71.98 0.69 -4.39 16 2 C -0.12 -5.62 5.25 30.59 0.16 -5.46 16 3 C 0.22 10.61 1.47 44.17 0.07 10.68 16 4 H -0.02 -0.83 6.43 -2.39 -0.02 -0.84 16 5 C -0.59 -32.87 8.35 25.60 0.21 -32.66 16 6 H 0.03 2.00 7.84 -2.91 -0.02 1.97 16 7 C -0.02 -1.17 5.11 84.65 0.43 -0.74 16 8 N -0.93 -54.15 12.94 21.45 0.28 -53.87 16 9 Si 1.11 50.38 29.92 68.60 2.05 52.43 16 10 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 12 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 13 N -0.67 -29.09 5.53 -477.17 -2.64 -31.73 16 14 C 0.08 2.62 2.81 44.17 0.12 2.74 16 15 H 0.10 3.70 7.58 -2.39 -0.02 3.68 16 16 C -0.17 -4.34 9.11 71.98 0.66 -3.68 16 17 C 0.52 17.24 6.97 87.66 0.61 17.85 16 18 O -0.56 -23.96 15.19 -3.04 -0.05 -24.00 16 19 N -0.70 -14.84 5.17 -428.79 -2.22 -17.05 16 20 C 0.22 4.37 1.18 2.32 0.00 4.38 16 21 C 0.24 6.97 12.65 89.43 1.13 8.10 16 22 N -0.47 -16.22 18.54 20.01 0.37 -15.85 16 23 C -0.14 -2.45 7.45 31.18 0.23 -2.22 16 24 C -0.13 -1.29 7.80 31.18 0.24 -1.05 16 25 C -0.10 -0.86 7.34 31.12 0.23 -0.63 16 26 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.06 1.86 6.69 -2.38 -0.02 1.85 16 29 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.04 2.24 6.52 -2.38 -0.02 2.23 16 31 H 0.26 15.12 6.33 -92.71 -0.59 14.54 16 32 H 0.33 13.42 6.31 -89.69 -0.57 12.85 16 33 H 0.10 1.74 7.43 -2.39 -0.02 1.72 16 34 H 0.05 1.47 8.04 -2.39 -0.02 1.45 16 35 H 0.06 1.71 7.50 -2.38 -0.02 1.69 16 36 H 0.43 5.46 8.00 -92.71 -0.74 4.72 16 37 H 0.12 1.85 8.14 -2.38 -0.02 1.84 16 38 H 0.05 1.25 8.08 -2.39 -0.02 1.23 16 39 H 0.08 0.91 8.13 -2.39 -0.02 0.89 16 40 H 0.11 0.58 8.14 -2.38 -0.02 0.56 16 41 H 0.09 0.68 8.08 -2.39 -0.02 0.66 16 42 H 0.14 0.30 8.13 -2.39 -0.02 0.28 16 Total: -1.00 -77.64 345.53 2.50 -75.14 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: -0.09 Total: 22.02 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: 4.79 Total: -7.08 kcal Atomic # 7 Polarization: -114.30 SS G_CDS: -4.21 Total: -118.51 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -0.05 Total: -24.00 kcal Atomic # 14 Polarization: 50.38 SS G_CDS: 2.05 Total: 52.43 kcal Total: -77.64 2.50 -75.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581556670.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.898 kcal (2) G-P(sol) polarization free energy of solvation -77.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds