Wall clock time and date at job start Tue Mar 31 2020 02:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47131 * 2 1 4 4 C 1.53007 * 109.46791 * 240.00440 * 2 1 3 5 5 N 1.46503 * 109.46711 * 295.24333 * 4 2 1 6 6 N 1.28445 * 125.18843 * 276.37633 * 5 4 2 7 7 C 1.30867 * 110.92319 * 179.81991 * 6 5 4 8 8 C 1.39677 * 107.86288 * 0.44063 * 7 6 5 9 9 C 1.36594 * 125.18896 * 96.68399 * 5 4 2 10 10 C 1.47168 * 126.88519 * 0.02562 * 9 5 4 11 11 O 1.21629 * 119.99714 * 355.55514 * 10 9 5 12 12 N 1.34772 * 120.00070 * 175.55784 * 10 9 5 13 13 C 1.46504 * 120.00099 * 184.97870 * 12 10 9 14 14 C 1.52992 * 109.47186 * 180.02562 * 13 12 10 15 15 C 1.53003 * 109.47142 * 180.02562 * 14 13 12 16 16 C 1.50699 * 109.47001 * 179.97438 * 15 14 13 17 17 H 1.08001 * 120.00545 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99702 * 179.97438 * 16 15 14 19 19 N 1.31509 * 119.99827 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99997 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46849 * 60.00461 * 20 18 16 22 22 H 1.48493 * 109.47246 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.47011 * 300.00831 * 20 18 16 24 24 H 1.09001 * 109.46925 * 294.94866 * 1 2 3 25 25 H 1.08998 * 109.47286 * 54.95113 * 1 2 3 26 26 H 1.08994 * 109.47322 * 174.95361 * 1 2 3 27 27 H 1.09000 * 109.47507 * 120.00475 * 2 1 3 28 28 H 1.08997 * 109.47610 * 60.00283 * 3 2 1 29 29 H 1.09000 * 109.47035 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.46995 * 300.00170 * 3 2 1 31 31 H 1.08992 * 109.47163 * 55.24352 * 4 2 1 32 32 H 1.09006 * 109.46809 * 175.24872 * 4 2 1 33 33 H 1.07994 * 126.06839 * 180.18335 * 7 6 5 34 34 H 1.07999 * 127.31909 * 179.70584 * 8 7 6 35 35 H 0.97001 * 119.99771 * 4.98216 * 12 10 9 36 36 H 1.08997 * 109.46691 * 300.00379 * 13 12 10 37 37 H 1.09004 * 109.46724 * 60.00066 * 13 12 10 38 38 H 1.09002 * 109.47092 * 300.00326 * 14 13 12 39 39 H 1.08999 * 109.47648 * 60.00033 * 14 13 12 40 40 H 1.08999 * 109.46735 * 299.99690 * 15 14 13 41 41 H 1.08994 * 109.47464 * 59.99596 * 15 14 13 42 42 H 0.97005 * 120.00019 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 7 1.6472 -2.1315 -1.1935 6 7 2.2863 -3.0535 -0.5679 7 6 1.6870 -4.2094 -0.6999 8 6 0.5555 -4.0170 -1.4959 9 6 0.5490 -2.6676 -1.8036 10 6 -0.4423 -1.9536 -2.6242 11 8 -0.3714 -0.7459 -2.7495 12 7 -1.4285 -2.6380 -3.2368 13 6 -2.3496 -1.9443 -4.1406 14 6 -3.3659 -2.9428 -4.6981 15 6 -4.3274 -2.2184 -5.6424 16 6 -5.3280 -3.2021 -6.1920 17 1 -5.2831 -4.2401 -5.8969 18 6 -6.3017 -2.7768 -7.0707 19 7 -6.3568 -1.5128 -7.4296 20 14 -7.5417 -3.9962 -7.7526 21 1 -8.3079 -4.6010 -6.6335 22 1 -8.4749 -3.2931 -8.6690 23 1 -6.8275 -5.0641 -8.4975 24 1 -0.3633 0.4335 0.9318 25 1 -0.3634 0.5901 -0.8413 26 1 -0.3633 -1.0236 -0.0904 27 1 1.8934 -0.5139 0.8899 28 1 1.6767 1.9564 0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6087 -0.2589 -2.1372 32 1 3.1266 -0.6481 -1.2930 33 1 2.0121 -5.1466 -0.2729 34 1 -0.1615 -4.7628 -1.8059 35 1 -1.5285 -3.5899 -3.0793 36 1 -2.8733 -1.1602 -3.5938 37 1 -1.7871 -1.5007 -4.9622 38 1 -2.8423 -3.7272 -5.2446 39 1 -3.9282 -3.3860 -3.8763 40 1 -4.8509 -1.4339 -5.0961 41 1 -3.7648 -1.7755 -6.4642 42 1 -7.0415 -1.2136 -8.0481 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584292718.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:38:28 Heat of formation + Delta-G solvation = 12.587546 kcal Electronic energy + Delta-G solvation = -21499.782215 eV Core-core repulsion = 18287.690983 eV Total energy + Delta-G solvation = -3212.091232 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.69437 -39.27645 -36.76565 -35.45768 -33.44031 -32.19451 -31.66395 -30.52079 -27.35212 -26.97579 -26.61610 -23.86979 -22.50427 -21.66928 -20.76879 -20.53429 -19.66037 -17.93522 -16.42802 -16.33575 -16.15498 -15.42352 -15.35591 -15.08417 -14.51299 -14.25354 -13.94047 -13.84080 -13.75412 -13.39337 -12.98298 -12.39090 -12.29656 -12.16811 -11.89023 -11.79001 -11.43995 -11.22129 -11.03843 -10.92103 -10.90568 -10.78156 -10.64971 -10.04945 -9.91157 -9.46093 -9.33187 -9.17206 -9.15485 -8.84991 -8.39584 -6.04409 -4.07673 1.19174 2.26825 2.49361 3.20863 3.29337 3.30587 3.35569 3.37751 4.31881 4.42090 4.49398 4.58357 4.71886 4.76171 5.02296 5.17102 5.23980 5.31490 5.39326 5.46161 5.52083 5.58411 5.63555 5.68856 5.70170 5.72639 5.84248 6.00633 6.08565 6.22112 6.32897 6.40302 6.53430 6.61274 6.74981 6.94198 7.51963 7.59711 7.71872 7.93753 7.94295 8.18269 8.35017 8.98710 9.56702 11.06834 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.028191 B = 0.003027 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.970706 B = 9247.368146 C =10004.684891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.104 4.104 3 C -0.143 4.143 4 C 0.116 3.884 5 N -0.252 5.252 6 N -0.282 5.282 7 C -0.006 4.006 8 C -0.194 4.194 9 C -0.031 4.031 10 C 0.583 3.417 11 O -0.539 6.539 12 N -0.709 5.709 13 C 0.119 3.881 14 C -0.122 4.122 15 C 0.025 3.975 16 C -0.524 4.524 17 H 0.055 0.945 18 C 0.057 3.943 19 N -0.894 5.894 20 Si 0.893 3.107 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 H 0.052 0.948 25 H 0.074 0.926 26 H 0.048 0.952 27 H 0.074 0.926 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.122 0.878 32 H 0.094 0.906 33 H 0.185 0.815 34 H 0.160 0.840 35 H 0.402 0.598 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.019 0.981 41 H 0.019 0.981 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.993 -0.754 14.755 22.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.123 4.123 3 C -0.201 4.201 4 C -0.004 4.004 5 N -0.039 5.039 6 N -0.114 5.114 7 C -0.181 4.181 8 C -0.224 4.224 9 C -0.160 4.160 10 C 0.368 3.632 11 O -0.417 6.417 12 N -0.359 5.359 13 C -0.004 4.004 14 C -0.160 4.160 15 C -0.013 4.013 16 C -0.562 4.562 17 H 0.073 0.927 18 C -0.144 4.144 19 N -0.533 5.533 20 Si 0.721 3.279 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.202 1.202 24 H 0.071 0.929 25 H 0.093 0.907 26 H 0.067 0.933 27 H 0.093 0.907 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.140 0.860 32 H 0.112 0.888 33 H 0.202 0.798 34 H 0.178 0.822 35 H 0.236 0.764 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.038 0.962 41 H 0.037 0.963 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 17.898 0.924 14.994 23.367 hybrid contribution -1.464 -1.639 -0.680 2.301 sum 16.434 -0.716 14.313 21.805 Atomic orbital electron populations 1.21903 0.93898 1.02265 1.02373 1.21411 0.97416 0.96623 0.96897 1.21759 1.00865 0.94694 1.02815 1.22425 1.01616 0.74279 1.02107 1.45757 1.16155 1.08557 1.33448 1.73178 1.23148 0.98004 1.17070 1.23538 0.95437 0.96387 1.02766 1.22280 1.01726 0.94134 1.04210 1.21542 0.94848 0.94025 1.05542 1.16944 0.80681 0.86442 0.79168 1.90758 1.74678 1.13287 1.62955 1.45931 1.30648 1.12933 1.46380 1.21731 0.90541 0.96253 0.91831 1.21909 0.96441 0.97718 0.99910 1.19019 0.93038 0.95708 0.93521 1.21163 1.13349 0.95102 1.26617 0.92655 1.25025 0.97750 0.95184 0.96449 1.69950 1.34525 1.14676 1.34131 0.86639 0.81133 0.81197 0.78922 1.20219 1.21265 1.20223 0.92920 0.90693 0.93282 0.90728 0.91884 0.92438 0.91822 0.86025 0.88795 0.79828 0.82219 0.76391 0.91336 0.91470 0.92574 0.92562 0.96242 0.96258 0.92840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 7.92 37.16 0.29 -1.41 16 2 C -0.10 -1.03 3.13 -90.62 -0.28 -1.31 16 3 C -0.14 -1.12 9.19 37.16 0.34 -0.78 16 4 C 0.12 1.25 5.41 -4.04 -0.02 1.23 16 5 N -0.25 -3.15 3.04 -57.13 -0.17 -3.33 16 6 N -0.28 -3.49 11.90 30.59 0.36 -3.13 16 7 C -0.01 -0.06 12.03 -17.43 -0.21 -0.27 16 8 C -0.19 -2.07 10.50 -38.98 -0.41 -2.48 16 9 C -0.03 -0.40 5.72 -82.06 -0.47 -0.87 16 10 C 0.58 8.43 7.22 -12.64 -0.09 8.34 16 11 O -0.54 -8.89 12.31 5.25 0.06 -8.83 16 12 N -0.71 -9.75 5.54 -61.47 -0.34 -10.09 16 13 C 0.12 1.96 5.68 -4.04 -0.02 1.94 16 14 C -0.12 -2.28 5.27 -26.73 -0.14 -2.42 16 15 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 16 C -0.52 -14.37 9.11 -34.44 -0.31 -14.69 16 17 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.89 -26.48 13.29 55.43 0.74 -25.75 16 20 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.07 0.98 6.94 -51.93 -0.36 0.62 16 26 H 0.05 0.65 6.12 -51.93 -0.32 0.33 16 27 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.12 1.46 6.04 -51.93 -0.31 1.14 16 32 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.18 1.29 8.06 -52.49 -0.42 0.87 16 34 H 0.16 1.27 7.58 -52.49 -0.40 0.87 16 35 H 0.40 4.51 7.50 -40.82 -0.31 4.21 16 36 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 344.55 15.07 5.19 5.19 Total: -1.00 -31.50 344.55 -7.47 -38.98 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -6.73 Total: 1.45 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: -1.56 Total: -10.72 kcal Atomic # 7 Polarization: -42.87 SS G_CDS: 0.59 Total: -42.28 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.06 Total: -8.83 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.50 -7.47 -38.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584292718.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.567 kcal (2) G-P(sol) polarization free energy of solvation -31.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds