Wall clock time and date at job start Tue Mar 31 2020 02:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47131 * 2 1 4 4 C 1.53007 * 109.46791 * 240.00440 * 2 1 3 5 5 N 1.46503 * 109.46711 * 295.24333 * 4 2 1 6 6 N 1.28445 * 125.18843 * 276.37633 * 5 4 2 7 7 C 1.30867 * 110.92319 * 179.81991 * 6 5 4 8 8 C 1.39677 * 107.86288 * 0.44063 * 7 6 5 9 9 C 1.36594 * 125.18896 * 96.68399 * 5 4 2 10 10 C 1.47168 * 126.88519 * 0.02562 * 9 5 4 11 11 O 1.21629 * 119.99714 * 355.55514 * 10 9 5 12 12 N 1.34772 * 120.00070 * 175.55784 * 10 9 5 13 13 C 1.46504 * 120.00099 * 184.97870 * 12 10 9 14 14 C 1.52992 * 109.47186 * 180.02562 * 13 12 10 15 15 C 1.53003 * 109.47142 * 180.02562 * 14 13 12 16 16 C 1.50699 * 109.47001 * 179.97438 * 15 14 13 17 17 H 1.08001 * 120.00545 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99702 * 179.97438 * 16 15 14 19 19 N 1.31509 * 119.99827 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99997 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46849 * 60.00461 * 20 18 16 22 22 H 1.48493 * 109.47246 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.47011 * 300.00831 * 20 18 16 24 24 H 1.09001 * 109.46925 * 294.94866 * 1 2 3 25 25 H 1.08998 * 109.47286 * 54.95113 * 1 2 3 26 26 H 1.08994 * 109.47322 * 174.95361 * 1 2 3 27 27 H 1.09000 * 109.47507 * 120.00475 * 2 1 3 28 28 H 1.08997 * 109.47610 * 60.00283 * 3 2 1 29 29 H 1.09000 * 109.47035 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.46995 * 300.00170 * 3 2 1 31 31 H 1.08992 * 109.47163 * 55.24352 * 4 2 1 32 32 H 1.09006 * 109.46809 * 175.24872 * 4 2 1 33 33 H 1.07994 * 126.06839 * 180.18335 * 7 6 5 34 34 H 1.07999 * 127.31909 * 179.70584 * 8 7 6 35 35 H 0.97001 * 119.99771 * 4.98216 * 12 10 9 36 36 H 1.08997 * 109.46691 * 300.00379 * 13 12 10 37 37 H 1.09004 * 109.46724 * 60.00066 * 13 12 10 38 38 H 1.09002 * 109.47092 * 300.00326 * 14 13 12 39 39 H 1.08999 * 109.47648 * 60.00033 * 14 13 12 40 40 H 1.08999 * 109.46735 * 299.99690 * 15 14 13 41 41 H 1.08994 * 109.47464 * 59.99596 * 15 14 13 42 42 H 0.97005 * 120.00019 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 7 1.6472 -2.1315 -1.1935 6 7 2.2863 -3.0535 -0.5679 7 6 1.6870 -4.2094 -0.6999 8 6 0.5555 -4.0170 -1.4959 9 6 0.5490 -2.6676 -1.8036 10 6 -0.4423 -1.9536 -2.6242 11 8 -0.3714 -0.7459 -2.7495 12 7 -1.4285 -2.6380 -3.2368 13 6 -2.3496 -1.9443 -4.1406 14 6 -3.3659 -2.9428 -4.6981 15 6 -4.3274 -2.2184 -5.6424 16 6 -5.3280 -3.2021 -6.1920 17 1 -5.2831 -4.2401 -5.8969 18 6 -6.3017 -2.7768 -7.0707 19 7 -6.3568 -1.5128 -7.4296 20 14 -7.5417 -3.9962 -7.7526 21 1 -8.3079 -4.6010 -6.6335 22 1 -8.4749 -3.2931 -8.6690 23 1 -6.8275 -5.0641 -8.4975 24 1 -0.3633 0.4335 0.9318 25 1 -0.3634 0.5901 -0.8413 26 1 -0.3633 -1.0236 -0.0904 27 1 1.8934 -0.5139 0.8899 28 1 1.6767 1.9564 0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6087 -0.2589 -2.1372 32 1 3.1266 -0.6481 -1.2930 33 1 2.0121 -5.1466 -0.2729 34 1 -0.1615 -4.7628 -1.8059 35 1 -1.5285 -3.5899 -3.0793 36 1 -2.8733 -1.1602 -3.5938 37 1 -1.7871 -1.5007 -4.9622 38 1 -2.8423 -3.7272 -5.2446 39 1 -3.9282 -3.3860 -3.8763 40 1 -4.8509 -1.4339 -5.0961 41 1 -3.7648 -1.7755 -6.4642 42 1 -7.0415 -1.2136 -8.0481 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584292718.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:38:27 Heat of formation + Delta-G solvation = -7.079574 kcal Electronic energy + Delta-G solvation = -21500.635045 eV Core-core repulsion = 18287.690983 eV Total energy + Delta-G solvation = -3212.944062 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.57400 -40.45234 -37.62780 -36.87685 -35.22635 -33.37597 -32.89324 -31.73370 -28.60804 -28.18736 -27.51268 -25.45569 -23.72173 -22.61673 -22.31687 -21.46086 -20.73046 -18.99595 -18.44458 -17.29950 -17.26259 -16.61345 -16.47673 -16.37423 -16.07574 -15.38461 -15.18102 -14.72305 -14.61443 -14.39467 -14.23128 -13.83464 -13.74680 -13.51806 -13.12385 -12.90303 -12.70631 -12.54995 -12.41056 -12.28615 -12.02196 -11.88820 -11.80550 -11.65634 -11.55479 -11.24772 -10.98498 -10.53421 -10.35364 -10.04347 -9.95583 -8.18424 -6.29573 0.22414 1.37001 1.43050 1.45544 1.53365 1.66471 2.15208 2.20087 2.43635 3.15607 3.50467 3.55802 3.70924 3.93681 3.97415 4.12571 4.22229 4.22698 4.40109 4.45976 4.55969 4.60743 4.67332 4.71167 4.82786 4.87123 4.94664 4.95540 4.97388 5.06977 5.18317 5.27019 5.31162 5.39822 5.53233 5.57769 5.72649 5.76046 5.85760 6.23499 6.42700 6.87977 7.03735 7.12103 7.40018 8.93414 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.028191 B = 0.003027 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.970706 B = 9247.368146 C =10004.684891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.097 4.097 3 C -0.139 4.139 4 C 0.112 3.888 5 N -0.260 5.260 6 N -0.297 5.297 7 C -0.005 4.005 8 C -0.182 4.182 9 C -0.056 4.056 10 C 0.583 3.417 11 O -0.565 6.565 12 N -0.699 5.699 13 C 0.134 3.866 14 C -0.103 4.103 15 C 0.024 3.976 16 C -0.542 4.542 17 H 0.067 0.933 18 C -0.003 4.003 19 N -0.935 5.935 20 Si 0.965 3.035 21 H -0.266 1.266 22 H -0.287 1.287 23 H -0.266 1.266 24 H 0.062 0.938 25 H 0.055 0.945 26 H 0.029 0.971 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.056 0.944 31 H 0.105 0.895 32 H 0.110 0.890 33 H 0.218 0.782 34 H 0.188 0.812 35 H 0.416 0.584 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.069 0.931 39 H 0.069 0.931 40 H -0.007 1.007 41 H -0.007 1.007 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.668 -2.991 15.785 23.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.116 4.116 3 C -0.197 4.197 4 C -0.007 4.007 5 N -0.048 5.048 6 N -0.130 5.130 7 C -0.180 4.180 8 C -0.211 4.211 9 C -0.184 4.184 10 C 0.369 3.631 11 O -0.445 6.445 12 N -0.351 5.351 13 C 0.011 3.989 14 C -0.141 4.141 15 C -0.013 4.013 16 C -0.580 4.580 17 H 0.085 0.915 18 C -0.200 4.200 19 N -0.575 5.575 20 Si 0.790 3.210 21 H -0.190 1.190 22 H -0.213 1.213 23 H -0.190 1.190 24 H 0.081 0.919 25 H 0.074 0.926 26 H 0.049 0.951 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.075 0.925 31 H 0.123 0.877 32 H 0.128 0.872 33 H 0.235 0.765 34 H 0.206 0.794 35 H 0.254 0.746 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.011 0.989 41 H 0.012 0.988 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 18.587 -1.345 16.041 24.589 hybrid contribution -1.636 -0.945 -0.966 2.122 sum 16.951 -2.289 15.075 22.800 Atomic orbital electron populations 1.21826 0.95366 1.00672 1.01985 1.21364 0.95994 0.97818 0.96432 1.21739 1.01886 0.93177 1.02902 1.22484 1.02492 0.73973 1.01783 1.45894 1.16181 1.08996 1.33683 1.73175 1.23697 0.98725 1.17412 1.24170 0.94875 0.96943 1.02026 1.22704 1.01961 0.93516 1.02949 1.21437 0.95221 0.94990 1.06726 1.17185 0.80785 0.86197 0.78949 1.90751 1.75301 1.14589 1.63862 1.45643 1.30059 1.13535 1.45835 1.21301 0.90348 0.95490 0.91796 1.21610 0.95778 0.97595 0.99101 1.18929 0.93568 0.95190 0.93647 1.21670 1.13770 0.96027 1.26507 0.91501 1.26001 1.00055 0.97036 0.96927 1.70098 1.35547 1.16866 1.35017 0.85499 0.78423 0.78747 0.78376 1.19041 1.21265 1.19031 0.91903 0.92630 0.95141 0.90670 0.91068 0.90791 0.92455 0.87656 0.87152 0.76504 0.79436 0.74641 0.92684 0.92597 0.91200 0.91280 0.98889 0.98841 0.92836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 7.92 71.98 0.57 -2.75 16 2 C -0.10 -1.86 3.13 -10.79 -0.03 -1.90 16 3 C -0.14 -2.05 9.19 71.98 0.66 -1.38 16 4 C 0.11 2.40 5.41 86.38 0.47 2.87 16 5 N -0.26 -6.28 3.04 -334.67 -1.02 -7.30 16 6 N -0.30 -6.84 11.90 -57.14 -0.68 -7.52 16 7 C 0.00 -0.09 12.03 85.18 1.02 0.94 16 8 C -0.18 -3.41 10.50 22.66 0.24 -3.18 16 9 C -0.06 -1.37 5.72 40.79 0.23 -1.14 16 10 C 0.58 16.77 7.22 86.59 0.63 17.40 16 11 O -0.57 -19.23 12.31 -4.12 -0.05 -19.28 16 12 N -0.70 -18.62 5.54 -466.63 -2.59 -21.21 16 13 C 0.13 4.47 5.68 86.38 0.49 4.96 16 14 C -0.10 -3.79 5.27 30.59 0.16 -3.62 16 15 C 0.02 1.23 4.97 29.85 0.15 1.38 16 16 C -0.54 -29.69 9.11 25.60 0.23 -29.45 16 17 H 0.07 3.43 7.74 -2.91 -0.02 3.40 16 18 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 19 N -0.94 -56.52 13.29 21.45 0.28 -56.23 16 20 Si 0.97 43.24 29.54 68.60 2.03 45.26 16 21 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 22 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 23 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 24 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.05 1.51 6.94 -2.39 -0.02 1.49 16 26 H 0.03 0.81 6.12 -2.39 -0.01 0.79 16 27 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.11 2.61 6.04 -2.39 -0.01 2.59 16 32 H 0.11 1.91 8.14 -2.38 -0.02 1.89 16 33 H 0.22 2.21 8.06 -2.91 -0.02 2.18 16 34 H 0.19 2.28 7.58 -2.91 -0.02 2.25 16 35 H 0.42 8.47 7.50 -92.71 -0.70 7.78 16 36 H 0.05 1.98 8.14 -2.39 -0.02 1.97 16 37 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 39 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 40 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 41 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 42 H 0.26 15.00 8.31 -92.70 -0.77 14.23 16 Total: -1.00 -68.91 344.55 3.57 -65.35 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: 0.31 Total: 16.49 kcal Atomic # 6 Polarization: -20.84 SS G_CDS: 5.28 Total: -15.56 kcal Atomic # 7 Polarization: -88.25 SS G_CDS: -4.00 Total: -92.26 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: -0.05 Total: -19.28 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.26 kcal Total: -68.91 3.57 -65.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584292718.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.266 kcal (2) G-P(sol) polarization free energy of solvation -68.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds