Wall clock time and date at job start Tue Mar 31 2020 03:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46870 * 2 1 4 4 H 1.09002 * 109.47038 * 55.00593 * 3 2 1 5 5 C 1.50701 * 109.47026 * 174.99874 * 3 2 1 6 6 H 1.07995 * 119.99850 * 119.99864 * 5 3 2 7 7 C 1.37877 * 120.00167 * 300.00737 * 5 3 2 8 8 N 1.31509 * 120.00095 * 179.97438 * 7 5 3 9 9 Si 1.86805 * 119.99948 * 359.97438 * 7 5 3 10 10 H 1.48495 * 109.47079 * 90.00489 * 9 7 5 11 11 H 1.48499 * 109.46917 * 210.00385 * 9 7 5 12 12 H 1.48500 * 109.47156 * 330.00502 * 9 7 5 13 13 N 1.46496 * 109.47328 * 295.00218 * 3 2 1 14 14 C 1.34774 * 119.99989 * 85.00269 * 13 3 2 15 15 O 1.21619 * 120.00242 * 359.97438 * 14 13 3 16 16 C 1.47329 * 120.00085 * 179.97438 * 14 13 3 17 17 N 1.35761 * 126.23249 * 354.19772 * 16 14 13 18 18 C 1.30171 * 108.86390 * 179.88211 * 17 16 14 19 19 N 1.35845 * 109.00463 * 0.38567 * 18 17 16 20 20 H 0.97000 * 126.13367 * 179.76361 * 19 18 17 21 21 C 1.35382 * 107.73000 * 359.75850 * 19 18 17 22 22 C 1.50694 * 126.56544 * 179.97438 * 21 19 18 23 23 C 1.53002 * 109.46996 * 2.12461 * 22 21 19 24 24 C 1.52999 * 109.47104 * 122.11995 * 22 21 19 25 25 C 1.52994 * 109.47594 * 242.12090 * 22 21 19 26 26 H 1.09002 * 109.47180 * 59.99651 * 1 2 3 27 27 H 1.08998 * 109.46939 * 299.99566 * 1 2 3 28 28 H 1.09002 * 109.47149 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47195 * 120.00329 * 2 1 3 30 30 H 1.08998 * 109.46939 * 240.00434 * 2 1 3 31 31 H 0.97006 * 120.00304 * 179.97438 * 8 7 5 32 32 H 0.97005 * 119.99966 * 264.99563 * 13 3 2 33 33 H 1.08002 * 125.49613 * 180.12229 * 18 17 16 34 34 H 1.08999 * 109.47518 * 59.99738 * 23 22 21 35 35 H 1.09000 * 109.47194 * 179.97438 * 23 22 21 36 36 H 1.08997 * 109.47311 * 299.99843 * 23 22 21 37 37 H 1.09001 * 109.47101 * 65.15766 * 24 22 21 38 38 H 1.08997 * 109.47652 * 185.16123 * 24 22 21 39 39 H 1.09003 * 109.47210 * 305.16319 * 24 22 21 40 40 H 1.09007 * 109.46809 * 55.00748 * 25 22 21 41 41 H 1.08998 * 109.47629 * 174.99909 * 25 22 21 42 42 H 1.08996 * 109.47447 * 295.00688 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4444 0.1239 6 1 4.1471 1.8889 -0.6522 7 6 4.1433 0.8784 1.2279 8 7 5.4539 0.8795 1.3358 9 14 3.0963 0.1098 2.5706 10 1 2.8746 -1.3262 2.2644 11 1 3.7941 0.2357 3.8754 12 1 1.7881 0.8090 2.6394 13 7 1.6524 2.0975 -1.2517 14 6 0.4351 2.6644 -1.3668 15 8 -0.3418 2.6319 -0.4316 16 6 0.0455 3.3237 -2.6254 17 7 0.8442 3.5308 -3.7035 18 6 0.1562 4.1383 -4.6265 19 7 -1.1057 4.3503 -4.1703 20 1 -1.8234 4.7870 -4.6552 21 6 -1.1819 3.8425 -2.9177 22 6 -2.3909 3.8496 -2.0181 23 6 -3.5720 4.4830 -2.7562 24 6 -2.7447 2.4131 -1.6279 25 6 -2.0837 4.6597 -0.7572 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 5.8771 0.4816 2.1127 32 1 2.2719 2.1233 -1.9977 33 1 0.5297 4.4309 -5.5968 34 1 -3.7909 3.9059 -3.6546 35 1 -4.4466 4.4878 -2.1057 36 1 -3.3201 5.5064 -3.0343 37 1 -1.9410 1.9924 -1.0235 38 1 -3.6710 2.4102 -1.0534 39 1 -2.8739 1.8132 -2.5287 40 1 -1.7462 5.6570 -1.0393 41 1 -2.9842 4.7398 -0.1483 42 1 -1.3019 4.1597 -0.1855 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585089521.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:43 Heat of formation + Delta-G solvation = 16.466122 kcal Electronic energy + Delta-G solvation = -23172.335799 eV Core-core repulsion = 19960.412755 eV Total energy + Delta-G solvation = -3211.923044 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.24583 -38.87559 -36.73648 -35.11099 -32.70216 -32.15683 -31.28596 -29.07676 -27.50427 -27.16194 -26.97501 -23.58869 -22.37267 -21.97386 -20.75218 -19.77340 -19.10917 -17.77538 -16.77455 -15.73869 -15.37703 -15.34267 -14.81500 -14.58962 -14.43033 -14.27439 -13.63849 -13.53191 -13.07010 -12.81271 -12.39862 -12.35275 -12.12523 -11.90127 -11.70849 -11.35638 -11.26006 -11.07898 -10.89918 -10.77594 -10.66476 -10.51617 -10.02060 -9.99614 -9.82013 -9.41928 -9.13301 -8.95462 -8.65505 -8.35462 -7.84477 -6.11963 -4.13555 1.80115 2.64699 2.95814 3.29633 3.41047 3.46024 4.04874 4.15493 4.39061 4.45333 4.74656 4.77358 4.92727 5.18207 5.21423 5.36518 5.48884 5.60721 5.63017 5.76895 5.92589 5.93108 6.04437 6.10484 6.17101 6.18556 6.20268 6.26285 6.57544 6.66247 6.76215 6.80928 6.82927 6.94275 7.05144 7.23298 7.39246 7.48240 7.65131 7.89156 8.31847 8.70594 8.88251 9.12479 9.49265 11.00353 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.025063 B = 0.005465 C = 0.004882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.934373 B = 5122.017765 C = 5734.204200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.139 4.139 3 C 0.242 3.758 4 H 0.051 0.949 5 C -0.532 4.532 6 H 0.081 0.919 7 C 0.078 3.922 8 N -0.894 5.894 9 Si 0.883 3.117 10 H -0.276 1.276 11 H -0.296 1.296 12 H -0.259 1.259 13 N -0.681 5.681 14 C 0.588 3.412 15 O -0.542 6.542 16 C -0.050 4.050 17 N -0.457 5.457 18 C 0.175 3.825 19 N -0.567 5.567 20 H 0.419 0.581 21 C 0.070 3.930 22 C 0.016 3.984 23 C -0.152 4.152 24 C -0.160 4.160 25 C -0.158 4.158 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.030 0.970 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.266 0.734 32 H 0.403 0.597 33 H 0.211 0.789 34 H 0.052 0.948 35 H 0.067 0.933 36 H 0.051 0.949 37 H 0.111 0.889 38 H 0.054 0.946 39 H 0.040 0.960 40 H 0.040 0.960 41 H 0.053 0.947 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.138 6.515 -11.016 21.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.177 4.177 3 C 0.138 3.862 4 H 0.069 0.931 5 C -0.570 4.570 6 H 0.099 0.901 7 C -0.126 4.126 8 N -0.531 5.531 9 Si 0.713 3.287 10 H -0.203 1.203 11 H -0.223 1.223 12 H -0.184 1.184 13 N -0.327 5.327 14 C 0.374 3.626 15 O -0.424 6.424 16 C -0.179 4.179 17 N -0.177 5.177 18 C -0.110 4.110 19 N -0.170 5.170 20 H 0.257 0.743 21 C -0.051 4.051 22 C 0.014 3.986 23 C -0.210 4.210 24 C -0.217 4.217 25 C -0.215 4.215 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.049 0.951 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.237 0.763 33 H 0.227 0.773 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.070 0.930 37 H 0.129 0.871 38 H 0.073 0.927 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.072 0.928 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -16.560 6.144 -10.247 20.420 hybrid contribution -1.203 0.107 -0.219 1.227 sum -17.762 6.251 -10.466 21.543 Atomic orbital electron populations 1.21912 0.96979 0.98998 1.02303 1.22282 0.94394 0.99982 1.01044 1.19176 0.95655 0.88475 0.82850 0.93145 1.21087 0.88720 1.39409 1.07747 0.90141 1.24833 0.94840 0.95226 0.97653 1.69877 1.08699 1.44756 1.29772 0.86905 0.81019 0.79924 0.80862 1.20341 1.22326 1.18353 1.46017 1.14516 1.54247 1.17940 1.16842 0.82587 0.78329 0.84860 1.90462 1.51067 1.61280 1.39551 1.20675 0.91101 1.09666 0.96498 1.70651 1.31564 1.15242 1.00194 1.25087 0.81117 1.03722 1.01070 1.43138 1.13764 1.46462 1.13683 0.74323 1.21153 0.97869 0.99815 0.86263 1.19019 0.88325 0.98087 0.93142 1.22035 0.98545 0.99871 1.00537 1.22281 1.03869 0.93794 1.01770 1.22250 1.04053 0.98725 0.96474 0.92734 0.92711 0.95119 0.92841 0.92343 0.92405 0.76298 0.77258 0.92924 0.91368 0.92958 0.87143 0.92698 0.94044 0.94071 0.92769 0.87101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 8.51 37.16 0.32 -2.56 16 2 C -0.14 -3.12 5.11 -26.73 -0.14 -3.26 16 3 C 0.24 5.86 1.83 -69.08 -0.13 5.73 16 4 H 0.05 1.32 6.63 -51.93 -0.34 0.97 16 5 C -0.53 -14.79 9.31 -34.44 -0.32 -15.11 16 6 H 0.08 2.40 7.98 -52.49 -0.42 1.98 16 7 C 0.08 2.22 5.45 -17.82 -0.10 2.12 16 8 N -0.89 -27.01 13.96 55.43 0.77 -26.24 16 9 Si 0.88 21.98 24.41 -169.99 -4.15 17.83 16 10 H -0.28 -6.68 6.83 56.52 0.39 -6.30 16 11 H -0.30 -7.35 7.11 56.52 0.40 -6.95 16 12 H -0.26 -6.31 6.53 56.52 0.37 -5.94 16 13 N -0.68 -14.64 5.02 -56.04 -0.28 -14.92 16 14 C 0.59 11.60 6.08 -12.56 -0.08 11.52 16 15 O -0.54 -10.89 7.10 5.26 0.04 -10.85 16 16 C -0.05 -0.86 6.81 -83.09 -0.57 -1.42 16 17 N -0.46 -7.29 11.02 -11.03 -0.12 -7.41 16 18 C 0.17 1.94 13.04 -89.91 -1.17 0.77 16 19 N -0.57 -5.66 5.83 -10.11 -0.06 -5.72 16 20 H 0.42 2.59 8.10 -40.82 -0.33 2.26 16 21 C 0.07 0.95 5.59 -81.68 -0.46 0.50 16 22 C 0.02 0.19 0.75 -155.67 -0.12 0.08 16 23 C -0.15 -1.34 7.56 37.16 0.28 -1.06 16 24 C -0.16 -2.15 8.19 37.16 0.30 -1.84 16 25 C -0.16 -2.15 8.25 37.15 0.31 -1.84 16 26 H 0.05 1.06 5.02 -51.93 -0.26 0.80 16 27 H 0.05 1.12 7.84 -51.93 -0.41 0.71 16 28 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.05 1.26 3.22 -51.93 -0.17 1.10 16 30 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 31 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 32 H 0.40 8.49 8.26 -40.82 -0.34 8.15 16 33 H 0.21 1.35 8.06 -52.49 -0.42 0.93 16 34 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.05 0.40 8.04 -51.93 -0.42 -0.02 16 37 H 0.11 1.82 3.89 -51.93 -0.20 1.62 16 38 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.11 1.88 4.64 -51.93 -0.24 1.64 16 LS Contribution 319.42 15.07 4.81 4.81 Total: -1.00 -31.98 319.42 -6.96 -38.94 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -6.11 Total: 9.93 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: -1.86 Total: -6.38 kcal Atomic # 7 Polarization: -54.60 SS G_CDS: 0.31 Total: -54.29 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.04 Total: -10.85 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.15 Total: 17.83 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.98 -6.96 -38.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585089521.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.406 kcal (2) G-P(sol) polarization free energy of solvation -31.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds