Wall clock time and date at job start Tue Mar 31 2020 03:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46979 * 2 1 4 4 H 1.08998 * 109.46839 * 305.00078 * 3 2 1 5 5 C 1.50697 * 109.46911 * 184.99816 * 3 2 1 6 6 H 1.07998 * 120.00152 * 239.99921 * 5 3 2 7 7 C 1.37875 * 120.00117 * 60.00278 * 5 3 2 8 8 N 1.31517 * 119.99939 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00224 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47152 * 60.00122 * 9 7 5 11 11 H 1.48502 * 109.47447 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47002 * 299.99841 * 9 7 5 13 13 N 1.46501 * 109.47001 * 65.00135 * 3 2 1 14 14 C 1.34776 * 119.99697 * 274.99962 * 13 3 2 15 15 O 1.21683 * 120.00111 * 0.02562 * 14 13 3 16 16 C 1.46771 * 119.99955 * 179.97438 * 14 13 3 17 17 C 1.36663 * 126.84585 * 180.02562 * 16 14 13 18 18 N 1.33317 * 107.78701 * 179.97438 * 17 16 14 19 19 C 1.30864 * 109.68195 * 0.02562 * 18 17 16 20 20 C 1.50700 * 125.41630 * 180.02562 * 19 18 17 21 21 C 1.53007 * 109.46878 * 304.97684 * 20 19 18 22 22 C 1.53001 * 109.46980 * 175.00204 * 21 20 19 23 23 C 1.53001 * 109.46767 * 294.99672 * 21 20 19 24 24 N 1.34490 * 109.16390 * 0.02562 * 19 18 17 25 25 H 0.97005 * 126.46844 * 179.97438 * 24 19 18 26 26 H 1.09003 * 109.47041 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47338 * 300.00173 * 1 2 3 28 28 H 1.09005 * 109.47281 * 60.00030 * 1 2 3 29 29 H 1.08997 * 109.47061 * 240.00558 * 2 1 3 30 30 H 1.08997 * 109.46923 * 119.99983 * 2 1 3 31 31 H 0.97000 * 119.99815 * 179.97438 * 8 7 5 32 32 H 0.96990 * 120.00089 * 94.99760 * 13 3 2 33 33 H 1.08003 * 126.10333 * 0.02562 * 17 16 14 34 34 H 1.08997 * 109.47054 * 64.96964 * 20 19 18 35 35 H 1.08998 * 109.47179 * 184.97747 * 20 19 18 36 36 H 1.08993 * 109.47138 * 54.99901 * 21 20 19 37 37 H 1.09002 * 109.47549 * 59.99867 * 22 21 20 38 38 H 1.08997 * 109.46975 * 179.97438 * 22 21 20 39 39 H 1.08997 * 109.47132 * 299.99849 * 22 21 20 40 40 H 1.08993 * 109.47479 * 300.00021 * 23 21 20 41 41 H 1.09004 * 109.46927 * 60.00535 * 23 21 20 42 42 H 1.09004 * 109.47155 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2279 8 7 3.4062 0.3367 -2.1728 9 14 6.0049 0.8813 -1.3817 10 1 6.5975 0.1473 -0.2348 11 1 6.3979 0.2168 -2.6503 12 1 6.4994 2.2816 -1.3821 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6644 1.3669 15 8 -0.3422 2.6317 0.4313 16 6 0.0466 3.3200 2.6213 17 6 -1.1440 3.9348 2.8900 18 7 -1.0903 4.3982 4.1389 19 6 0.0710 4.1073 4.6674 20 6 0.5085 4.4637 6.0647 21 6 0.3645 5.9724 6.2750 22 6 0.6893 6.3179 7.7296 23 6 1.3312 6.7111 5.3473 24 7 0.8118 3.4395 3.7651 25 1 1.7131 3.1045 3.8936 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8294 -0.0611 -2.9498 32 1 2.2718 2.1231 1.9977 33 1 -1.9796 4.0277 2.2121 34 1 -0.1143 3.9353 6.7864 35 1 1.5504 4.1753 6.2039 36 1 -0.6581 6.2747 6.0493 37 1 1.7119 6.0157 7.9553 38 1 0.5871 7.3927 7.8793 39 1 0.0007 5.7916 8.3905 40 1 2.3538 6.4089 5.5729 41 1 1.0998 6.4650 4.3109 42 1 1.2289 7.7860 5.4973 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585139921.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:26 Heat of formation + Delta-G solvation = -9.629682 kcal Electronic energy + Delta-G solvation = -21891.128745 eV Core-core repulsion = 18678.074102 eV Total energy + Delta-G solvation = -3213.054643 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.10993 -38.79251 -36.53254 -35.13697 -32.96522 -32.16892 -31.11692 -30.29086 -27.40803 -27.34981 -26.54855 -23.44138 -22.38363 -21.28178 -20.66872 -19.57396 -19.47353 -18.45784 -16.60810 -15.72719 -15.64108 -15.34135 -14.85841 -14.52543 -14.44627 -14.15670 -13.72982 -13.56661 -13.25699 -12.73031 -12.58698 -12.51451 -12.16381 -12.06760 -11.59144 -11.31868 -11.28136 -11.15843 -11.06881 -10.90261 -10.88567 -10.40875 -10.30141 -10.11729 -10.04691 -9.70214 -9.27955 -9.13503 -8.57392 -8.35338 -7.91876 -6.19059 -4.29517 1.58343 2.94391 2.99799 3.20016 3.26072 3.26540 3.89320 3.96381 4.25923 4.32783 4.55638 4.69715 4.88509 5.07528 5.12258 5.28660 5.35206 5.43917 5.46796 5.51681 5.64978 5.67835 5.79766 5.89044 5.97878 6.09167 6.17569 6.35023 6.41514 6.60870 6.70992 6.98399 7.13175 7.26218 7.27976 7.33557 7.53706 7.63278 7.81547 8.02243 8.10269 8.51983 8.67876 8.96006 9.37668 10.86157 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.020443 B = 0.004067 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.324661 B = 6883.280049 C = 7871.763113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.052 0.948 5 C -0.538 4.538 6 H 0.059 0.941 7 C 0.068 3.932 8 N -0.880 5.880 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.276 1.276 13 N -0.705 5.705 14 C 0.578 3.422 15 O -0.531 6.531 16 C -0.071 4.071 17 C 0.053 3.947 18 N -0.493 5.493 19 C 0.228 3.772 20 C -0.032 4.032 21 C -0.088 4.088 22 C -0.147 4.147 23 C -0.148 4.148 24 N -0.550 5.550 25 H 0.420 0.580 26 H 0.024 0.976 27 H 0.038 0.962 28 H 0.051 0.949 29 H 0.101 0.899 30 H 0.030 0.970 31 H 0.266 0.734 32 H 0.381 0.619 33 H 0.181 0.819 34 H 0.092 0.908 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.054 0.946 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.052 0.948 41 H 0.055 0.945 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.664 7.402 16.753 18.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.070 0.930 5 C -0.577 4.577 6 H 0.077 0.923 7 C -0.135 4.135 8 N -0.517 5.517 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.210 1.210 12 H -0.202 1.202 13 N -0.352 5.352 14 C 0.362 3.638 15 O -0.409 6.409 16 C -0.188 4.188 17 C -0.100 4.100 18 N -0.213 5.213 19 C -0.036 4.036 20 C -0.071 4.071 21 C -0.108 4.108 22 C -0.204 4.204 23 C -0.206 4.206 24 N -0.155 5.155 25 H 0.258 0.742 26 H 0.043 0.957 27 H 0.057 0.943 28 H 0.070 0.930 29 H 0.119 0.881 30 H 0.049 0.951 31 H 0.076 0.924 32 H 0.213 0.787 33 H 0.198 0.802 34 H 0.110 0.890 35 H 0.097 0.903 36 H 0.104 0.896 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.831 7.663 16.193 18.320 hybrid contribution 2.442 -0.714 -0.176 2.550 sum -1.389 6.949 16.017 17.515 Atomic orbital electron populations 1.21853 0.98216 0.98225 1.01313 1.21942 0.92726 0.99619 1.02332 1.18844 0.94306 0.89251 0.80583 0.92980 1.21149 0.90562 1.39504 1.06465 0.92278 1.24877 0.98669 0.94683 0.95317 1.69878 1.35301 1.37228 1.09288 0.86507 0.84718 0.78329 0.77534 1.20183 1.21023 1.20169 1.46457 1.14101 1.55996 1.18644 1.16878 0.83074 0.78896 0.84950 1.90825 1.51559 1.60115 1.38355 1.21705 0.95517 1.12004 0.89537 1.22560 0.96603 0.97697 0.93141 1.70078 1.18468 1.23914 1.08867 1.23231 0.88671 0.97414 0.94243 1.20181 1.01538 0.97434 0.87937 1.21060 1.01414 0.92895 0.95403 1.21842 1.01504 1.01647 0.95445 1.21861 0.98769 1.00224 0.99719 1.43296 1.16344 1.44042 1.11844 0.74158 0.95709 0.94316 0.92986 0.88130 0.95102 0.92377 0.78737 0.80225 0.89004 0.90315 0.89583 0.92698 0.92390 0.92464 0.92889 0.92634 0.92537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.51 37.16 0.32 -2.76 16 2 C -0.13 -3.04 5.45 -26.73 -0.15 -3.19 16 3 C 0.27 6.66 2.24 -69.08 -0.15 6.51 16 4 H 0.05 1.49 7.58 -51.93 -0.39 1.09 16 5 C -0.54 -13.83 8.73 -34.44 -0.30 -14.13 16 6 H 0.06 1.44 7.74 -52.49 -0.41 1.03 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.17 11.29 55.43 0.63 -23.55 16 9 Si 0.90 20.13 29.54 -169.99 -5.02 15.11 16 10 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 12 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 13 N -0.70 -14.19 5.02 -56.21 -0.28 -14.47 16 14 C 0.58 11.55 6.36 -12.81 -0.08 11.47 16 15 O -0.53 -12.35 14.03 5.20 0.07 -12.28 16 16 C -0.07 -1.17 7.08 -82.14 -0.58 -1.75 16 17 C 0.05 0.85 11.66 -17.48 -0.20 0.65 16 18 N -0.49 -7.35 11.09 -10.58 -0.12 -7.47 16 19 C 0.23 2.81 6.38 -155.61 -0.99 1.82 16 20 C -0.03 -0.27 5.32 -27.88 -0.15 -0.42 16 21 C -0.09 -0.74 2.89 -90.61 -0.26 -1.00 16 22 C -0.15 -0.94 9.19 37.16 0.34 -0.60 16 23 C -0.15 -1.33 9.01 37.16 0.33 -1.00 16 24 N -0.55 -6.99 6.07 -7.02 -0.04 -7.03 16 25 H 0.42 4.20 8.32 -40.82 -0.34 3.86 16 26 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.04 0.84 5.64 -51.93 -0.29 0.55 16 28 H 0.05 1.22 7.84 -51.93 -0.41 0.82 16 29 H 0.10 2.65 5.95 -51.93 -0.31 2.35 16 30 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 32 H 0.38 6.53 7.78 -40.82 -0.32 6.22 16 33 H 0.18 2.75 8.06 -52.48 -0.42 2.33 16 34 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.09 0.85 8.06 -51.93 -0.42 0.43 16 37 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 38 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.05 0.63 7.38 -51.93 -0.38 0.24 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 342.40 15.07 5.16 5.16 Total: -1.00 -30.33 342.40 -8.21 -38.53 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -6.63 Total: 8.70 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: -1.97 Total: -2.70 kcal Atomic # 7 Polarization: -52.71 SS G_CDS: 0.18 Total: -52.52 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: 0.07 Total: -12.28 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.33 -8.21 -38.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585139921.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.902 kcal (2) G-P(sol) polarization free energy of solvation -30.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds