Wall clock time and date at job start Tue Mar 31 2020 00:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52994 * 109.47083 * 2 1 4 4 C 1.50708 * 109.46745 * 180.02562 * 3 2 1 5 5 C 1.35359 * 126.38319 * 275.29710 * 4 3 2 6 6 C 1.41501 * 105.49984 * 180.14383 * 5 4 3 7 7 C 1.47716 * 126.51672 * 179.84506 * 6 5 4 8 8 O 1.21573 * 120.00017 * 359.71102 * 7 6 5 9 9 N 1.34777 * 119.99706 * 179.70800 * 7 6 5 10 10 C 1.46499 * 119.99665 * 179.72381 * 9 7 6 11 11 C 1.53004 * 109.47198 * 180.27868 * 10 9 7 12 12 C 1.52998 * 109.46876 * 299.99984 * 11 10 9 13 13 C 1.53005 * 109.46795 * 60.00011 * 11 10 9 14 14 C 1.50700 * 109.47208 * 180.02562 * 11 10 9 15 15 H 1.08002 * 119.99770 * 359.97438 * 14 11 10 16 16 C 1.37876 * 119.99720 * 179.97438 * 14 11 10 17 17 N 1.31514 * 120.00513 * 0.02562 * 16 14 11 18 18 Si 1.86809 * 119.99651 * 179.97438 * 16 14 11 19 19 H 1.48493 * 109.47037 * 59.99882 * 18 16 14 20 20 H 1.48501 * 109.46667 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47133 * 299.99829 * 18 16 14 22 22 N 1.31802 * 106.96561 * 359.57867 * 6 5 4 23 23 N 1.28471 * 110.07383 * 0.26597 * 22 6 5 24 24 H 0.97003 * 124.88460 * 179.97438 * 23 22 6 25 25 H 1.09006 * 109.46683 * 300.00448 * 1 2 3 26 26 H 1.08995 * 109.47110 * 59.99901 * 1 2 3 27 27 H 1.09001 * 109.47356 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.46914 * 239.99693 * 2 1 3 29 29 H 1.09003 * 109.46936 * 119.99861 * 2 1 3 30 30 H 1.08993 * 109.47496 * 60.00050 * 3 2 1 31 31 H 1.09003 * 109.47121 * 299.99747 * 3 2 1 32 32 H 1.07995 * 127.25416 * 359.97438 * 5 4 3 33 33 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 34 34 H 1.09009 * 109.47454 * 300.27637 * 10 9 7 35 35 H 1.08998 * 109.47492 * 60.27932 * 10 9 7 36 36 H 1.08996 * 109.47009 * 60.00253 * 12 11 10 37 37 H 1.09004 * 109.46783 * 179.97438 * 12 11 10 38 38 H 1.08998 * 109.47156 * 300.00070 * 12 11 10 39 39 H 1.09000 * 109.47011 * 60.00556 * 13 11 10 40 40 H 1.09004 * 109.46658 * 180.02562 * 13 11 10 41 41 H 1.08996 * 109.47069 * 299.99740 * 13 11 10 42 42 H 0.96999 * 120.00239 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5471 1.4424 -0.0006 5 6 4.3505 1.3415 1.0841 6 6 5.6724 1.3915 0.5816 7 6 6.9171 1.3224 1.3739 8 8 6.8625 1.2165 2.5838 9 7 8.1134 1.3767 0.7555 10 6 9.3479 1.3142 1.5419 11 6 10.5544 1.4020 0.6050 12 6 10.5191 0.2340 -0.3827 13 6 10.5067 2.7231 -0.1654 14 6 11.8243 1.3371 1.4138 15 1 11.7757 1.2431 2.4886 16 6 13.0481 1.3978 0.7816 17 7 13.1072 1.5128 -0.5271 18 14 14.6222 1.3180 1.7844 19 1 14.6680 0.0362 2.5326 20 1 15.7931 1.4032 0.8749 21 1 14.6568 2.4520 2.7425 22 7 5.5818 1.5057 -0.7283 23 7 4.3477 1.5367 -1.0840 24 1 4.0359 1.6168 -1.9990 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.6768 1.9563 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 4.0467 1.2461 2.1160 33 1 8.1571 1.4615 -0.2098 34 1 9.3731 2.1463 2.2456 35 1 9.3819 0.3731 2.0907 36 1 9.6007 0.2806 -0.9677 37 1 11.3784 0.2969 -1.0504 38 1 10.5530 -0.7071 0.1662 39 1 10.5318 3.5551 0.5383 40 1 11.3660 2.7855 -0.8332 41 1 9.5882 2.7695 -0.7504 42 1 13.9682 1.5551 -0.9719 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590915981.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:39 Heat of formation + Delta-G solvation = 11.040800 kcal Electronic energy + Delta-G solvation = -21467.672658 eV Core-core repulsion = 18255.514354 eV Total energy + Delta-G solvation = -3212.158304 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.69125 -38.90306 -36.25445 -35.66093 -33.22901 -31.88025 -31.16724 -30.58413 -26.79278 -25.84771 -25.64737 -25.12039 -23.04664 -22.23802 -21.07698 -19.64381 -18.71271 -17.74986 -16.80898 -15.76754 -15.71253 -15.44999 -14.93614 -14.60904 -14.39042 -14.13236 -13.75245 -13.50860 -13.15679 -12.84855 -12.66234 -12.56169 -12.11959 -11.84445 -11.67780 -11.31343 -11.16903 -11.12654 -10.79772 -10.79258 -10.68521 -10.31715 -10.16564 -9.70909 -9.56196 -9.36087 -9.23199 -9.01743 -8.73301 -8.38526 -8.23089 -5.96620 -4.06731 1.70106 2.11101 2.79721 3.33881 3.37835 3.41360 3.77261 3.79961 4.34790 4.44810 4.47099 4.63849 4.69133 4.98155 5.06471 5.29793 5.31123 5.39423 5.45635 5.59620 5.67282 5.69167 5.88166 5.93132 6.27958 6.39329 6.39540 6.59220 6.83994 6.91013 6.92753 7.03140 7.09482 7.10490 7.42457 7.62819 7.74487 7.80955 8.07381 8.16048 8.25412 8.44314 8.75238 8.93868 9.58626 11.04757 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.046948 B = 0.003020 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.257007 B = 9268.804752 C = 9535.496851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.048 4.048 4 C 0.010 3.990 5 C -0.177 4.177 6 C -0.001 4.001 7 C 0.590 3.410 8 O -0.545 6.545 9 N -0.701 5.701 10 C 0.130 3.870 11 C 0.056 3.944 12 C -0.132 4.132 13 C -0.132 4.132 14 C -0.505 4.505 15 H 0.057 0.943 16 C 0.066 3.934 17 N -0.886 5.886 18 Si 0.894 3.106 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 N -0.258 5.258 23 N -0.383 5.383 24 H 0.442 0.558 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.160 0.840 33 H 0.404 0.596 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.007 0.993 37 H 0.085 0.915 38 H 0.026 0.974 39 H 0.026 0.974 40 H 0.085 0.915 41 H 0.007 0.993 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.356 -0.528 -3.714 22.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.087 4.087 4 C -0.116 4.116 5 C -0.205 4.205 6 C -0.163 4.163 7 C 0.373 3.627 8 O -0.422 6.422 9 N -0.351 5.351 10 C 0.008 3.992 11 C 0.056 3.944 12 C -0.189 4.189 13 C -0.189 4.189 14 C -0.544 4.544 15 H 0.076 0.924 16 C -0.135 4.135 17 N -0.525 5.525 18 Si 0.722 3.278 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.203 1.203 22 N -0.093 5.093 23 N -0.097 5.097 24 H 0.286 0.714 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.109 0.891 31 H 0.093 0.907 32 H 0.178 0.822 33 H 0.241 0.759 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.026 0.974 37 H 0.104 0.896 38 H 0.046 0.954 39 H 0.046 0.954 40 H 0.104 0.896 41 H 0.026 0.974 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -21.515 -0.509 -3.904 21.873 hybrid contribution 0.271 -0.007 0.199 0.337 sum -21.244 -0.516 -3.705 21.571 Atomic orbital electron populations 1.21782 0.95293 1.02000 1.01947 1.21553 0.95906 0.95582 1.02966 1.20195 0.86422 0.98200 1.03918 1.21389 0.94896 1.07819 0.87484 1.21503 0.90555 1.08685 0.99722 1.22197 0.95643 1.08704 0.89750 1.16961 0.81917 0.77457 0.86377 1.90756 1.86932 1.51295 1.13218 1.46208 1.05641 1.71481 1.11785 1.21791 0.82206 1.00646 0.94558 1.18352 0.90870 0.92892 0.92314 1.21835 0.99727 0.97619 0.99762 1.21836 0.99713 0.97499 0.99900 1.20953 0.89800 1.50405 0.93219 0.92436 1.24883 0.98886 0.94855 0.94915 1.69802 1.24862 1.50237 1.07584 0.86630 0.82598 0.78665 0.79929 1.20292 1.21384 1.20295 1.73618 1.01222 1.19149 1.15335 1.43306 1.03027 1.53677 1.09693 0.71406 0.92405 0.92718 0.92456 0.91972 0.91074 0.89078 0.90732 0.82194 0.75938 0.92469 0.92462 0.97362 0.89601 0.95433 0.95433 0.89606 0.97353 0.92994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.91 37.16 0.37 -0.37 16 2 C -0.12 -0.74 5.92 -26.73 -0.16 -0.90 16 3 C -0.05 -0.30 5.77 -27.88 -0.16 -0.46 16 4 C 0.01 0.10 6.48 -82.21 -0.53 -0.43 16 5 C -0.18 -2.37 10.73 -39.37 -0.42 -2.79 16 6 C 0.00 -0.02 7.13 -82.77 -0.59 -0.61 16 7 C 0.59 11.61 7.83 -12.39 -0.10 11.51 16 8 O -0.55 -12.15 16.93 5.30 0.09 -12.06 16 9 N -0.70 -13.96 4.96 -61.29 -0.30 -14.26 16 10 C 0.13 2.91 4.50 -4.04 -0.02 2.89 16 11 C 0.06 1.36 0.50 -155.66 -0.08 1.28 16 12 C -0.13 -3.11 8.08 37.16 0.30 -2.81 16 13 C -0.13 -3.11 8.08 37.16 0.30 -2.81 16 14 C -0.51 -13.52 8.01 -34.44 -0.28 -13.79 16 15 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 16 C 0.07 1.76 5.15 -17.82 -0.09 1.67 16 17 N -0.89 -24.09 9.35 55.43 0.52 -23.57 16 18 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 N -0.26 -3.75 11.92 33.42 0.40 -3.35 16 23 N -0.38 -3.97 6.83 33.50 0.23 -3.74 16 24 H 0.44 2.86 8.96 -190.44 -1.71 1.15 16 25 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.16 2.00 8.06 -52.49 -0.42 1.58 16 33 H 0.40 7.70 5.89 -40.82 -0.24 7.46 16 34 H 0.06 1.32 8.14 -51.92 -0.42 0.90 16 35 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.01 0.16 6.86 -51.93 -0.36 -0.20 16 37 H 0.09 2.21 6.07 -51.93 -0.32 1.89 16 38 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.09 2.21 6.07 -51.93 -0.32 1.89 16 41 H 0.01 0.16 6.86 -51.93 -0.36 -0.19 16 42 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 343.32 15.07 5.17 5.17 Total: -1.00 -30.73 343.32 -8.28 -39.01 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -7.91 Total: 4.40 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: -1.46 Total: -7.62 kcal Atomic # 7 Polarization: -45.77 SS G_CDS: 0.84 Total: -44.93 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.09 Total: -12.06 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.73 -8.28 -39.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590915981.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.053 kcal (2) G-P(sol) polarization free energy of solvation -30.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds