Wall clock time and date at job start Tue Mar 31 2020 01:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46807 * 2 1 4 4 C 1.52995 * 109.47275 * 304.99663 * 3 2 1 5 5 O 1.42902 * 109.47008 * 65.00623 * 3 2 1 6 6 C 1.53008 * 109.46655 * 185.00220 * 3 2 1 7 7 C 1.50700 * 109.46892 * 180.02562 * 6 3 2 8 8 C 1.35350 * 126.74939 * 124.99787 * 7 6 3 9 9 N 1.35318 * 106.17142 * 180.02562 * 8 7 6 10 10 C 1.46502 * 125.86226 * 179.73600 * 9 8 7 11 11 C 1.53004 * 109.46804 * 122.97550 * 10 9 8 12 12 C 1.50698 * 115.54794 * 39.76416 * 11 10 9 13 13 H 1.08000 * 120.00247 * 274.02095 * 12 11 10 14 14 C 1.37874 * 120.00227 * 94.02901 * 12 11 10 15 15 N 1.31510 * 120.00277 * 174.27818 * 14 12 11 16 16 Si 1.86803 * 120.00055 * 354.27215 * 14 12 11 17 17 H 1.48503 * 109.46867 * 94.67583 * 16 14 12 18 18 H 1.48494 * 109.47351 * 214.67623 * 16 14 12 19 19 H 1.48496 * 109.46883 * 334.68023 * 16 14 12 20 20 C 1.52994 * 117.49816 * 254.05613 * 11 10 9 21 21 C 1.53000 * 117.49599 * 185.43086 * 11 10 9 22 22 N 1.28713 * 108.26263 * 0.02562 * 9 8 7 23 23 N 1.28634 * 110.18049 * 359.97438 * 22 9 8 24 24 H 1.08998 * 109.47210 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47387 * 299.99956 * 1 2 3 26 26 H 1.08999 * 109.47097 * 59.99706 * 1 2 3 27 27 H 1.08998 * 109.46685 * 240.00088 * 2 1 3 28 28 H 1.08999 * 109.47097 * 120.00294 * 2 1 3 29 29 H 1.08998 * 109.47336 * 300.00370 * 4 3 2 30 30 H 1.08998 * 109.46728 * 60.00592 * 4 3 2 31 31 H 1.08997 * 109.46946 * 179.97438 * 4 3 2 32 32 H 0.96695 * 114.00039 * 59.99668 * 5 3 2 33 33 H 1.08998 * 109.47402 * 59.99969 * 6 3 2 34 34 H 1.09007 * 109.47075 * 300.00177 * 6 3 2 35 35 H 1.07994 * 126.91466 * 0.04224 * 8 7 6 36 36 H 1.09005 * 109.46956 * 242.97436 * 10 9 8 37 37 H 1.08995 * 109.47475 * 2.97230 * 10 9 8 38 38 H 0.97004 * 120.00675 * 179.97438 * 15 14 12 39 39 H 1.09002 * 117.49634 * 359.97438 * 20 11 10 40 40 H 1.09001 * 117.50198 * 145.01931 * 20 11 10 41 41 H 1.09001 * 117.49465 * 214.97699 * 21 11 10 42 42 H 1.08998 * 117.50360 * 0.02562 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.4299 2.1991 -1.1816 5 8 1.6620 2.0813 1.2211 6 6 3.5648 1.4443 -0.1258 7 6 4.0672 2.8651 -0.1252 8 6 4.9944 3.3959 0.7059 9 7 5.1281 4.6925 0.3425 10 6 6.0217 5.6711 0.9669 11 6 6.9600 6.2534 -0.0921 12 6 6.3328 6.5315 -1.4338 13 1 6.2688 5.7467 -2.1731 14 6 5.8409 7.7877 -1.7179 15 7 5.3965 8.0626 -2.9247 16 14 5.8053 9.0995 -0.3883 17 1 7.0282 9.9364 -0.4859 18 1 4.6047 9.9545 -0.5685 19 1 5.7551 8.4503 0.9462 20 6 8.4180 5.7901 -0.0756 21 6 8.0595 7.2046 0.3846 22 7 4.3307 4.9197 -0.6421 23 7 3.6838 3.8500 -0.9452 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.7183 1.7118 -2.1130 30 1 0.3437 2.1978 -1.0920 31 1 1.7929 3.2269 -1.1813 32 1 2.0142 1.6542 2.0139 33 1 3.8532 0.9570 -1.0571 34 1 3.9995 0.9052 0.7160 35 1 5.5217 2.8869 1.4991 36 1 5.4303 6.4730 1.4089 37 1 6.6094 5.1825 1.7440 38 1 5.0500 8.9463 -3.1245 39 1 8.7089 5.0708 0.6899 40 1 8.9240 5.6862 -1.0355 41 1 8.3296 8.0312 -0.2726 42 1 8.1148 7.4152 1.4526 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594651240.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:28:18 Heat of formation + Delta-G solvation = 48.153016 kcal Electronic energy + Delta-G solvation = -22542.110929 eV Core-core repulsion = 19331.561932 eV Total energy + Delta-G solvation = -3210.548998 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.84429 -39.57603 -38.87192 -34.95824 -34.18669 -34.06487 -32.90626 -30.31067 -28.68916 -28.08278 -27.47175 -24.76474 -23.36919 -22.88827 -22.08239 -21.01548 -20.63260 -18.72992 -17.54515 -17.30310 -16.95411 -16.61600 -16.08802 -16.04628 -15.48141 -15.24066 -14.90388 -14.73512 -14.44952 -14.14534 -14.08034 -13.18517 -13.07569 -12.99815 -12.94866 -12.74858 -12.64856 -12.57411 -12.14882 -12.06742 -11.88943 -11.71365 -11.64550 -11.45222 -11.27691 -10.95336 -10.79719 -10.63619 -10.45386 -10.30909 -9.67959 -8.20360 -6.22813 1.09271 1.32886 1.37648 1.46502 1.87669 1.92780 2.39875 3.10594 3.20860 3.45090 3.69453 3.78156 3.87543 4.08922 4.14634 4.16791 4.27919 4.32115 4.36595 4.39723 4.57358 4.63520 4.72318 4.83183 4.84524 4.85480 4.89721 4.99821 5.08958 5.13957 5.15070 5.22240 5.30544 5.41054 5.47222 5.49994 5.53553 5.69840 5.83668 6.06966 6.35737 6.80331 7.08769 7.42260 8.03203 8.97779 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.027512 B = 0.004655 C = 0.004340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.500222 B = 6012.963580 C = 6450.791621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.139 4.139 3 C 0.144 3.856 4 C -0.155 4.155 5 O -0.573 6.573 6 C -0.051 4.051 7 C -0.033 4.033 8 C -0.065 4.065 9 N -0.268 5.268 10 C 0.141 3.859 11 C -0.053 4.053 12 C -0.450 4.450 13 H 0.013 0.987 14 C 0.023 3.977 15 N -0.951 5.951 16 Si 0.938 3.062 17 H -0.268 1.268 18 H -0.312 1.312 19 H -0.224 1.224 20 C -0.160 4.160 21 C -0.178 4.178 22 N -0.084 5.084 23 N -0.326 5.326 24 H 0.065 0.935 25 H 0.050 0.950 26 H 0.045 0.955 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.385 0.615 33 H 0.084 0.916 34 H 0.117 0.883 35 H 0.228 0.772 36 H 0.084 0.916 37 H 0.141 0.859 38 H 0.259 0.741 39 H 0.120 0.880 40 H 0.067 0.933 41 H 0.071 0.929 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.792 -16.253 15.243 22.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.177 4.177 3 C 0.103 3.897 4 C -0.212 4.212 5 O -0.381 6.381 6 C -0.091 4.091 7 C -0.173 4.173 8 C -0.215 4.215 9 N -0.061 5.061 10 C 0.021 3.979 11 C -0.055 4.055 12 C -0.488 4.488 13 H 0.031 0.969 14 C -0.173 4.173 15 N -0.592 5.592 16 Si 0.764 3.236 17 H -0.193 1.193 18 H -0.240 1.240 19 H -0.147 1.147 20 C -0.197 4.197 21 C -0.216 4.216 22 N -0.063 5.063 23 N -0.191 5.191 24 H 0.084 0.916 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.096 0.904 28 H 0.107 0.893 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.234 0.766 33 H 0.103 0.897 34 H 0.135 0.865 35 H 0.245 0.755 36 H 0.102 0.898 37 H 0.158 0.842 38 H 0.068 0.932 39 H 0.138 0.862 40 H 0.086 0.914 41 H 0.090 0.910 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.669 -14.640 13.728 20.139 hybrid contribution 0.433 0.212 0.442 0.654 sum -1.236 -14.428 14.169 20.260 Atomic orbital electron populations 1.21756 0.95666 1.01685 1.01662 1.22136 0.96766 0.94801 1.03949 1.21070 0.91570 0.92218 0.84826 1.22009 1.00291 1.02245 0.96674 1.86604 1.77057 1.58355 1.16061 1.20710 0.95776 0.87731 1.04834 1.22281 0.99943 0.98481 0.96560 1.23955 1.05688 0.85356 1.06523 1.47385 1.27283 1.09877 1.21521 1.22103 0.90789 0.90519 0.94511 1.19542 0.88402 1.02886 0.94670 1.19974 1.36899 0.95200 0.96736 0.96899 1.25773 0.94049 1.00739 0.96775 1.70077 1.44402 1.22140 1.22550 0.85949 0.76591 0.78980 0.82109 1.19299 1.23999 1.14691 1.23013 0.97764 0.96961 1.01923 1.23025 1.03448 0.93687 1.01441 1.78834 1.03478 1.20531 1.03425 1.75005 1.21444 0.97795 1.24841 0.91573 0.93063 0.93556 0.90362 0.89343 0.91607 0.92743 0.92323 0.76645 0.89741 0.86472 0.75534 0.89795 0.84159 0.93185 0.86180 0.91431 0.91002 0.86118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.32 71.98 0.67 -1.95 16 2 C -0.14 -2.24 5.20 30.60 0.16 -2.08 16 3 C 0.14 3.35 0.77 -10.79 -0.01 3.34 16 4 C -0.15 -4.79 7.97 71.98 0.57 -4.22 16 5 O -0.57 -14.25 12.14 -148.98 -1.81 -16.06 16 6 C -0.05 -1.17 5.04 29.85 0.15 -1.02 16 7 C -0.03 -1.13 6.03 41.60 0.25 -0.88 16 8 C -0.06 -1.96 11.49 83.49 0.96 -1.00 16 9 N -0.27 -10.56 3.36 -347.72 -1.17 -11.73 16 10 C 0.14 4.84 6.48 86.38 0.56 5.40 16 11 C -0.05 -2.21 1.23 -52.93 -0.07 -2.28 16 12 C -0.45 -25.54 7.14 25.60 0.18 -25.36 16 13 H 0.01 0.87 7.98 -2.91 -0.02 0.85 16 14 C 0.02 1.39 5.46 84.65 0.46 1.85 16 15 N -0.95 -62.63 13.96 21.45 0.30 -62.33 16 16 Si 0.94 44.57 24.88 68.60 1.71 46.27 16 17 H -0.27 -11.98 7.10 99.48 0.71 -11.27 16 18 H -0.31 -15.63 7.11 99.48 0.71 -14.92 16 19 H -0.22 -9.05 5.55 99.48 0.55 -8.50 16 20 C -0.16 -5.43 9.88 30.59 0.30 -5.13 16 21 C -0.18 -6.24 7.41 30.60 0.23 -6.01 16 22 N -0.08 -4.26 10.90 37.02 0.40 -3.86 16 23 N -0.33 -15.02 9.59 -48.60 -0.47 -15.48 16 24 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.05 0.97 7.82 -2.39 -0.02 0.95 16 26 H 0.05 0.92 6.34 -2.39 -0.02 0.90 16 27 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.05 1.60 6.34 -2.39 -0.02 1.58 16 31 H 0.06 2.36 5.31 -2.39 -0.01 2.34 16 32 H 0.38 5.79 9.04 -74.06 -0.67 5.12 16 33 H 0.08 1.91 8.14 -2.39 -0.02 1.90 16 34 H 0.12 1.63 8.12 -2.38 -0.02 1.61 16 35 H 0.23 3.97 8.06 -2.91 -0.02 3.94 16 36 H 0.08 2.94 6.83 -2.38 -0.02 2.92 16 37 H 0.14 3.10 7.87 -2.39 -0.02 3.08 16 38 H 0.26 16.18 8.31 -92.71 -0.77 15.41 16 39 H 0.12 2.98 8.08 -2.39 -0.02 2.97 16 40 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 41 H 0.07 2.85 6.78 -2.39 -0.02 2.83 16 42 H 0.12 3.20 8.14 -2.39 -0.02 3.18 16 Total: -1.00 -83.73 331.92 3.58 -80.15 By element: Atomic # 1 Polarization: 22.17 SS G_CDS: 0.19 Total: 22.36 kcal Atomic # 6 Polarization: -43.74 SS G_CDS: 4.42 Total: -39.32 kcal Atomic # 7 Polarization: -92.47 SS G_CDS: -0.93 Total: -93.40 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: -1.81 Total: -16.06 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 1.71 Total: 46.27 kcal Total: -83.73 3.58 -80.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594651240.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.302 kcal (2) G-P(sol) polarization free energy of solvation -83.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds