Wall clock time and date at job start Tue Mar 31 2020 00:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.50700 * 109.46881 * 2 1 4 4 N 1.29942 * 126.28812 * 270.01699 * 3 2 1 5 5 O 1.21300 * 110.25175 * 179.68998 * 4 3 2 6 6 C 1.33647 * 109.81028 * 0.46802 * 5 4 3 7 7 C 1.50694 * 126.55326 * 179.79855 * 6 5 4 8 8 H 1.09003 * 109.47491 * 166.27428 * 7 6 5 9 9 C 1.52997 * 109.47256 * 286.27761 * 7 6 5 10 10 N 1.46904 * 109.46952 * 46.27179 * 7 6 5 11 11 C 1.46846 * 111.00102 * 178.78821 * 10 7 6 12 12 C 1.53035 * 109.52325 * 174.16361 * 11 10 7 13 13 C 1.53112 * 109.31055 * 59.16309 * 12 11 10 14 14 C 1.53121 * 109.16066 * 302.40073 * 13 12 11 15 15 H 1.09003 * 109.50273 * 297.64393 * 14 13 12 16 16 C 1.50696 * 109.50845 * 177.55718 * 14 13 12 17 17 H 1.08002 * 120.00190 * 240.16565 * 16 14 13 18 18 C 1.37878 * 119.99979 * 60.15680 * 16 14 13 19 19 N 1.31511 * 119.99743 * 0.02562 * 18 16 14 20 20 Si 1.86794 * 120.00089 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.46758 * 90.00526 * 20 18 16 22 22 H 1.48493 * 109.47366 * 210.00022 * 20 18 16 23 23 H 1.48501 * 109.47337 * 330.00675 * 20 18 16 24 24 C 1.46853 * 110.99742 * 54.58420 * 10 7 6 25 25 N 1.31133 * 106.89557 * 359.54365 * 6 5 4 26 26 H 1.09002 * 109.46727 * 299.99975 * 1 2 3 27 27 H 1.09001 * 109.46400 * 60.00276 * 1 2 3 28 28 H 1.08996 * 109.47150 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46727 * 240.00025 * 2 1 3 30 30 H 1.09001 * 109.46400 * 119.99724 * 2 1 3 31 31 H 1.09001 * 109.47343 * 180.02562 * 9 7 6 32 32 H 1.09004 * 109.46948 * 299.99657 * 9 7 6 33 33 H 1.08997 * 109.47811 * 59.99656 * 9 7 6 34 34 H 1.09006 * 109.46088 * 54.14659 * 11 10 7 35 35 H 1.09006 * 109.45652 * 294.17503 * 11 10 7 36 36 H 1.09002 * 109.50275 * 179.12291 * 12 11 10 37 37 H 1.08997 * 109.50279 * 299.19606 * 12 11 10 38 38 H 1.08997 * 109.52742 * 62.27236 * 13 12 11 39 39 H 1.09004 * 109.52166 * 182.45933 * 13 12 11 40 40 H 0.97003 * 120.00197 * 180.02562 * 19 18 16 41 41 H 1.09002 * 109.45747 * 305.84988 * 24 10 7 42 42 H 1.08999 * 109.46210 * 65.82990 * 24 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2884 2.1460 -1.0474 5 8 2.6713 3.2472 -0.7123 6 6 2.7063 3.3281 0.6212 7 6 3.1284 4.5227 1.4371 8 1 2.8253 4.3799 2.4743 9 6 4.6490 4.6767 1.3667 10 7 2.4886 5.7320 0.9019 11 6 2.8551 6.9147 1.6915 12 6 2.2915 8.1706 1.0230 13 6 0.7682 8.0516 0.9247 14 6 0.4126 6.7857 0.1401 15 1 0.8044 6.8640 -0.8740 16 6 -1.0854 6.6289 0.0900 17 1 -1.5507 5.7499 0.5111 18 6 -1.8619 7.6076 -0.4933 19 7 -1.2952 8.6777 -1.0064 20 14 -3.7186 7.4128 -0.5560 21 1 -4.3204 8.0106 0.6629 22 1 -4.2484 8.1033 -1.7592 23 1 -4.0631 5.9698 -0.6215 24 6 1.0306 5.5698 0.8342 25 7 2.2977 2.1713 1.0842 26 1 -0.3633 0.5138 0.8900 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8901 31 1 4.9545 5.5406 1.9572 32 1 5.1238 3.7795 1.7638 33 1 4.9523 4.8196 0.3296 34 1 3.9410 6.9903 1.7495 35 1 2.4433 6.8222 2.6965 36 1 2.5505 9.0467 1.6176 37 1 2.7140 8.2715 0.0233 38 1 0.3421 7.9906 1.9261 39 1 0.3671 8.9247 0.4098 40 1 -1.8415 9.3664 -1.4164 41 1 0.7914 4.6687 0.2695 42 1 0.6275 5.4839 1.8432 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595611833.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:47 Heat of formation + Delta-G solvation = 57.428727 kcal Electronic energy + Delta-G solvation = -22764.270177 eV Core-core repulsion = 19554.123404 eV Total energy + Delta-G solvation = -3210.146773 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -45.34960 -38.73366 -36.17592 -35.06486 -33.31948 -32.29479 -30.83157 -30.29945 -29.14431 -25.34866 -24.99549 -24.40996 -23.17551 -22.29299 -21.25877 -20.03119 -18.71748 -17.83652 -17.17758 -16.35567 -15.65671 -15.43923 -14.71756 -14.61934 -14.19962 -14.06375 -13.48763 -13.02458 -12.95482 -12.72264 -12.63580 -12.39085 -12.03942 -11.90121 -11.82361 -11.68209 -11.44844 -11.29751 -11.15143 -10.95790 -10.82896 -10.73024 -10.66316 -10.13826 -9.88190 -9.71806 -9.48910 -9.12751 -8.75403 -8.32538 -7.92009 -5.99036 -4.05055 1.37252 2.37703 3.03380 3.30026 3.36933 3.40297 3.60493 4.05532 4.34123 4.49059 4.82494 5.01990 5.09136 5.14571 5.20651 5.31174 5.38284 5.46127 5.64610 5.65594 5.69246 5.75676 5.85308 5.94050 5.97519 6.05298 6.09858 6.15786 6.21314 6.29337 6.39632 6.63348 6.68033 6.85620 7.14010 7.27524 7.45746 7.59317 7.74531 8.04737 8.13863 8.40215 8.44533 8.98061 9.59267 11.07066 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.014044 B = 0.006206 C = 0.004568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.309710 B = 4510.463510 C = 6127.715634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.028 4.028 3 C 0.163 3.837 4 N -0.387 5.387 5 O 0.098 5.902 6 C 0.207 3.793 7 C 0.169 3.831 8 H 0.081 0.919 9 C -0.145 4.145 10 N -0.531 5.531 11 C 0.062 3.938 12 C -0.117 4.117 13 C -0.112 4.112 14 C 0.058 3.942 15 H 0.037 0.963 16 C -0.516 4.516 17 H 0.051 0.949 18 C 0.065 3.935 19 N -0.887 5.887 20 Si 0.889 3.111 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.275 1.275 24 C 0.067 3.933 25 N -0.489 5.489 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.029 0.971 36 H 0.050 0.950 37 H 0.063 0.937 38 H 0.031 0.969 39 H 0.093 0.907 40 H 0.260 0.740 41 H 0.050 0.950 42 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.064 -10.120 5.225 15.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.067 4.067 3 C -0.110 4.110 4 N -0.093 5.093 5 O 0.039 5.961 6 C -0.014 4.014 7 C 0.059 3.941 8 H 0.099 0.901 9 C -0.204 4.204 10 N -0.257 5.257 11 C -0.065 4.065 12 C -0.155 4.155 13 C -0.150 4.150 14 C 0.039 3.961 15 H 0.055 0.945 16 C -0.554 4.554 17 H 0.070 0.930 18 C -0.137 4.137 19 N -0.526 5.526 20 Si 0.717 3.283 21 H -0.207 1.207 22 H -0.211 1.211 23 H -0.200 1.200 24 C -0.059 4.059 25 N -0.224 5.224 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.107 0.893 30 H 0.111 0.889 31 H 0.097 0.903 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.048 0.952 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.050 0.950 39 H 0.111 0.889 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 9.980 -10.490 4.132 15.057 hybrid contribution -1.425 -0.067 0.820 1.645 sum 8.555 -10.556 4.952 14.462 Atomic orbital electron populations 1.21748 0.93307 1.02504 1.03139 1.19871 0.96843 0.85812 1.04183 1.25801 1.01040 1.00406 0.83752 1.74626 1.17623 0.92981 1.24112 1.85363 1.60040 1.26170 1.24531 1.28540 0.94557 0.95996 0.82259 1.20120 0.96192 0.84186 0.93647 0.90139 1.21930 0.91750 1.02577 1.04102 1.62183 1.11517 1.00430 1.51613 1.22146 0.99409 0.90548 0.94405 1.21677 0.99384 0.94218 1.00184 1.21671 0.90788 1.03306 0.99210 1.18647 0.94085 0.88288 0.95094 0.94526 1.21102 0.91380 1.05011 1.37944 0.93042 1.24902 0.98346 0.95293 0.95118 1.69881 1.35019 1.08937 1.38719 0.86639 0.85930 0.78193 0.77518 1.20703 1.21150 1.20041 1.22384 0.83262 1.01397 0.98880 1.71844 1.18610 1.02344 1.29601 0.91882 0.92089 0.91267 0.89346 0.88935 0.90324 0.91882 0.90722 0.91298 0.95248 0.93094 0.91775 0.95027 0.88918 0.93004 0.93126 0.95697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.90 37.16 0.37 -1.29 16 2 C -0.03 -0.32 6.56 -27.88 -0.18 -0.51 16 3 C 0.16 2.59 7.47 -156.37 -1.17 1.42 16 4 N -0.39 -6.90 12.16 30.90 0.38 -6.52 16 5 O 0.10 1.79 11.10 18.09 0.20 1.99 16 6 C 0.21 3.46 5.54 -13.06 -0.07 3.39 16 7 C 0.17 2.49 2.62 -68.87 -0.18 2.31 16 8 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 9 C -0.15 -1.63 8.99 37.16 0.33 -1.30 16 10 N -0.53 -9.31 4.52 -228.07 -1.03 -10.34 16 11 C 0.06 0.98 5.24 -3.84 -0.02 0.96 16 12 C -0.12 -2.12 6.09 -26.65 -0.16 -2.29 16 13 C -0.11 -2.56 5.03 -26.61 -0.13 -2.69 16 14 C 0.06 1.44 2.26 -91.69 -0.21 1.23 16 15 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 16 C -0.52 -14.26 8.56 -34.44 -0.29 -14.56 16 17 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 18 C 0.06 1.80 5.30 -17.82 -0.09 1.71 16 19 N -0.89 -25.20 11.36 55.43 0.63 -24.57 16 20 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 C 0.07 1.44 4.43 -3.83 -0.02 1.42 16 25 N -0.49 -8.17 11.55 -9.87 -0.11 -8.28 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.08 0.75 6.31 -51.93 -0.33 0.43 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 0.88 6.04 -51.93 -0.31 0.57 16 35 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.09 2.39 6.17 -51.93 -0.32 2.07 16 40 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 41 H 0.05 1.15 6.55 -51.93 -0.34 0.81 16 42 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 334.66 15.07 5.04 5.04 Total: -1.00 -29.89 334.66 -8.51 -38.40 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -6.76 Total: -1.98 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: -1.83 Total: -10.19 kcal Atomic # 7 Polarization: -49.58 SS G_CDS: -0.14 Total: -49.72 kcal Atomic # 8 Polarization: 1.79 SS G_CDS: 0.20 Total: 1.99 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.89 -8.51 -38.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595611833.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.830 kcal (2) G-P(sol) polarization free energy of solvation -29.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds