Wall clock time and date at job start Tue Mar 31 2020 00:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.50700 * 109.46881 * 2 1 4 4 N 1.29942 * 126.28812 * 270.01699 * 3 2 1 5 5 O 1.21300 * 110.25175 * 179.68998 * 4 3 2 6 6 C 1.33647 * 109.81028 * 0.46802 * 5 4 3 7 7 C 1.50694 * 126.55326 * 179.79855 * 6 5 4 8 8 H 1.09003 * 109.47491 * 166.27428 * 7 6 5 9 9 C 1.52997 * 109.47256 * 286.27761 * 7 6 5 10 10 N 1.46904 * 109.46952 * 46.27179 * 7 6 5 11 11 C 1.46846 * 111.00102 * 178.78821 * 10 7 6 12 12 C 1.53035 * 109.52325 * 174.16361 * 11 10 7 13 13 C 1.53112 * 109.31055 * 59.16309 * 12 11 10 14 14 C 1.53121 * 109.16066 * 302.40073 * 13 12 11 15 15 H 1.09003 * 109.50273 * 297.64393 * 14 13 12 16 16 C 1.50696 * 109.50845 * 177.55718 * 14 13 12 17 17 H 1.08002 * 120.00190 * 240.16565 * 16 14 13 18 18 C 1.37878 * 119.99979 * 60.15680 * 16 14 13 19 19 N 1.31511 * 119.99743 * 0.02562 * 18 16 14 20 20 Si 1.86794 * 120.00089 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.46758 * 90.00526 * 20 18 16 22 22 H 1.48493 * 109.47366 * 210.00022 * 20 18 16 23 23 H 1.48501 * 109.47337 * 330.00675 * 20 18 16 24 24 C 1.46853 * 110.99742 * 54.58420 * 10 7 6 25 25 N 1.31133 * 106.89557 * 359.54365 * 6 5 4 26 26 H 1.09002 * 109.46727 * 299.99975 * 1 2 3 27 27 H 1.09001 * 109.46400 * 60.00276 * 1 2 3 28 28 H 1.08996 * 109.47150 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46727 * 240.00025 * 2 1 3 30 30 H 1.09001 * 109.46400 * 119.99724 * 2 1 3 31 31 H 1.09001 * 109.47343 * 180.02562 * 9 7 6 32 32 H 1.09004 * 109.46948 * 299.99657 * 9 7 6 33 33 H 1.08997 * 109.47811 * 59.99656 * 9 7 6 34 34 H 1.09006 * 109.46088 * 54.14659 * 11 10 7 35 35 H 1.09006 * 109.45652 * 294.17503 * 11 10 7 36 36 H 1.09002 * 109.50275 * 179.12291 * 12 11 10 37 37 H 1.08997 * 109.50279 * 299.19606 * 12 11 10 38 38 H 1.08997 * 109.52742 * 62.27236 * 13 12 11 39 39 H 1.09004 * 109.52166 * 182.45933 * 13 12 11 40 40 H 0.97003 * 120.00197 * 180.02562 * 19 18 16 41 41 H 1.09002 * 109.45747 * 305.84988 * 24 10 7 42 42 H 1.08999 * 109.46210 * 65.82990 * 24 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2884 2.1460 -1.0474 5 8 2.6713 3.2472 -0.7123 6 6 2.7063 3.3281 0.6212 7 6 3.1284 4.5227 1.4371 8 1 2.8253 4.3799 2.4743 9 6 4.6490 4.6767 1.3667 10 7 2.4886 5.7320 0.9019 11 6 2.8551 6.9147 1.6915 12 6 2.2915 8.1706 1.0230 13 6 0.7682 8.0516 0.9247 14 6 0.4126 6.7857 0.1401 15 1 0.8044 6.8640 -0.8740 16 6 -1.0854 6.6289 0.0900 17 1 -1.5507 5.7499 0.5111 18 6 -1.8619 7.6076 -0.4933 19 7 -1.2952 8.6777 -1.0064 20 14 -3.7186 7.4128 -0.5560 21 1 -4.3204 8.0106 0.6629 22 1 -4.2484 8.1033 -1.7592 23 1 -4.0631 5.9698 -0.6215 24 6 1.0306 5.5698 0.8342 25 7 2.2977 2.1713 1.0842 26 1 -0.3633 0.5138 0.8900 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8901 31 1 4.9545 5.5406 1.9572 32 1 5.1238 3.7795 1.7638 33 1 4.9523 4.8196 0.3296 34 1 3.9410 6.9903 1.7495 35 1 2.4433 6.8222 2.6965 36 1 2.5505 9.0467 1.6176 37 1 2.7140 8.2715 0.0233 38 1 0.3421 7.9906 1.9261 39 1 0.3671 8.9247 0.4098 40 1 -1.8415 9.3664 -1.4164 41 1 0.7914 4.6687 0.2695 42 1 0.6275 5.4839 1.8432 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595611833.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:46 Heat of formation + Delta-G solvation = 37.099555 kcal Electronic energy + Delta-G solvation = -22765.151716 eV Core-core repulsion = 19554.123404 eV Total energy + Delta-G solvation = -3211.028312 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -46.63215 -40.20582 -37.39115 -36.60298 -34.82351 -33.78665 -32.17736 -31.88524 -30.57694 -27.09319 -26.08245 -25.88875 -24.63287 -23.59534 -22.82918 -21.30589 -20.39757 -19.15698 -18.65579 -18.16773 -16.98404 -16.84482 -16.54390 -15.72421 -15.59986 -15.18241 -14.99384 -14.63060 -14.36085 -14.13827 -14.02358 -13.60302 -13.46835 -13.38786 -13.01085 -12.88330 -12.71190 -12.64325 -12.57223 -12.49614 -12.34480 -12.26987 -11.99312 -11.76306 -11.74235 -11.40530 -11.01320 -10.86842 -10.72141 -10.39603 -9.33837 -8.12323 -6.26452 0.08148 1.13818 1.36169 1.37216 1.46971 1.79904 2.35747 2.43595 2.88903 3.13446 3.14548 3.73488 3.95979 4.06259 4.13411 4.18668 4.20503 4.29789 4.35691 4.39336 4.54701 4.66490 4.73884 4.79930 4.81202 4.83845 4.88413 4.91070 4.97862 4.98952 5.06382 5.16131 5.19992 5.29120 5.41405 5.48894 5.60393 5.87467 6.04628 6.12529 6.18239 6.38296 6.84613 7.11356 7.41088 8.92128 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.014044 B = 0.006206 C = 0.004568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.309710 B = 4510.463510 C = 6127.715634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.029 4.029 3 C 0.165 3.835 4 N -0.413 5.413 5 O 0.071 5.929 6 C 0.204 3.796 7 C 0.169 3.831 8 H 0.094 0.906 9 C -0.138 4.138 10 N -0.540 5.540 11 C 0.064 3.936 12 C -0.110 4.110 13 C -0.105 4.105 14 C 0.056 3.944 15 H -0.005 1.005 16 C -0.541 4.541 17 H 0.041 0.959 18 C 0.019 3.981 19 N -0.910 5.910 20 Si 0.949 3.051 21 H -0.271 1.271 22 H -0.280 1.280 23 H -0.275 1.275 24 C 0.088 3.912 25 N -0.501 5.501 26 H 0.047 0.953 27 H 0.040 0.960 28 H 0.102 0.898 29 H 0.106 0.894 30 H 0.115 0.885 31 H 0.104 0.896 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.113 0.887 35 H 0.040 0.960 36 H 0.080 0.920 37 H 0.053 0.947 38 H 0.026 0.974 39 H 0.058 0.942 40 H 0.262 0.738 41 H 0.027 0.973 42 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.198 -11.025 6.843 17.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.068 4.068 3 C -0.108 4.108 4 N -0.124 5.124 5 O 0.017 5.983 6 C -0.016 4.016 7 C 0.059 3.941 8 H 0.111 0.889 9 C -0.196 4.196 10 N -0.267 5.267 11 C -0.062 4.062 12 C -0.148 4.148 13 C -0.143 4.143 14 C 0.037 3.963 15 H 0.013 0.987 16 C -0.579 4.579 17 H 0.060 0.940 18 C -0.180 4.180 19 N -0.549 5.549 20 Si 0.775 3.225 21 H -0.196 1.196 22 H -0.205 1.205 23 H -0.200 1.200 24 C -0.039 4.039 25 N -0.236 5.236 26 H 0.066 0.934 27 H 0.059 0.941 28 H 0.121 0.879 29 H 0.125 0.875 30 H 0.134 0.866 31 H 0.122 0.878 32 H 0.099 0.901 33 H 0.086 0.914 34 H 0.131 0.869 35 H 0.058 0.942 36 H 0.098 0.902 37 H 0.072 0.928 38 H 0.045 0.955 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.045 0.955 42 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 11.139 -11.366 5.762 16.925 hybrid contribution -1.789 0.181 0.307 1.824 sum 9.350 -11.185 6.069 15.791 Atomic orbital electron populations 1.21735 0.93071 1.04153 1.01353 1.20166 0.96866 0.83535 1.06208 1.26642 0.99361 1.01695 0.83063 1.74617 1.19324 0.93274 1.25217 1.85322 1.60903 1.26708 1.25389 1.29088 0.93857 0.96727 0.81972 1.20412 0.98263 0.82018 0.93437 0.88880 1.21950 0.88568 1.04630 1.04410 1.62064 1.08768 1.02521 1.53310 1.22239 1.01908 0.88155 0.93937 1.21595 0.95469 0.97085 1.00670 1.21465 0.94528 1.00560 0.97727 1.18544 0.92913 0.91128 0.93667 0.98657 1.21448 0.93299 1.04826 1.38372 0.94040 1.25641 1.02638 0.94993 0.94751 1.70012 1.36468 1.09408 1.38996 0.85693 0.80811 0.78054 0.77944 1.19615 1.20519 1.20035 1.21906 0.86096 0.98440 0.97493 1.71870 1.19091 1.02639 1.29957 0.93392 0.94084 0.87898 0.87520 0.86645 0.87782 0.90073 0.91355 0.86905 0.94208 0.90190 0.92839 0.95548 0.92294 0.92885 0.95482 0.96123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 9.90 71.99 0.71 -2.36 16 2 C -0.03 -0.62 6.56 29.85 0.20 -0.43 16 3 C 0.17 5.20 7.47 138.46 1.03 6.23 16 4 N -0.41 -14.98 12.16 -60.33 -0.73 -15.71 16 5 O 0.07 2.64 11.10 74.80 0.83 3.47 16 6 C 0.20 6.74 5.54 88.38 0.49 7.23 16 7 C 0.17 4.66 2.62 44.17 0.12 4.77 16 8 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 9 C -0.14 -2.62 8.99 71.98 0.65 -1.98 16 10 N -0.54 -18.41 4.52 -875.48 -3.96 -22.37 16 11 C 0.06 1.83 5.24 86.33 0.45 2.28 16 12 C -0.11 -3.87 6.09 30.64 0.19 -3.68 16 13 C -0.10 -4.89 5.03 30.67 0.15 -4.73 16 14 C 0.06 2.92 2.26 -11.49 -0.03 2.90 16 15 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 16 C -0.54 -31.08 8.56 25.60 0.22 -30.86 16 17 H 0.04 2.39 7.74 -2.91 -0.02 2.37 16 18 C 0.02 1.09 5.30 84.66 0.45 1.54 16 19 N -0.91 -53.28 11.36 21.45 0.24 -53.04 16 20 Si 0.95 44.79 29.54 68.60 2.03 46.82 16 21 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 22 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 23 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 24 C 0.09 3.86 4.43 86.33 0.38 4.24 16 25 N -0.50 -16.39 11.55 -303.21 -3.50 -19.90 16 26 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.12 1.95 8.14 -2.39 -0.02 1.94 16 31 H 0.10 1.47 6.31 -2.39 -0.02 1.45 16 32 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.11 2.32 6.04 -2.38 -0.01 2.31 16 35 H 0.04 1.09 8.14 -2.38 -0.02 1.08 16 36 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 37 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.06 3.14 6.17 -2.39 -0.01 3.13 16 40 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 41 H 0.03 1.28 6.55 -2.39 -0.02 1.27 16 42 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -68.49 334.66 0.92 -67.57 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: 1.00 Total: 7.99 kcal Atomic # 6 Polarization: -19.85 SS G_CDS: 5.01 Total: -14.83 kcal Atomic # 7 Polarization: -103.07 SS G_CDS: -7.95 Total: -111.02 kcal Atomic # 8 Polarization: 2.64 SS G_CDS: 0.83 Total: 3.47 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -68.49 0.92 -67.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595611833.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.669 kcal (2) G-P(sol) polarization free energy of solvation -68.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds