Wall clock time and date at job start Tue Mar 31 2020 01:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.50698 * 109.47184 * 239.99667 * 2 1 3 5 5 N 1.31129 * 126.55586 * 240.00076 * 4 2 1 6 6 C 1.34489 * 105.61625 * 179.97438 * 5 4 2 7 7 C 1.50701 * 126.28900 * 179.97438 * 6 5 4 8 8 N 1.46903 * 109.46616 * 90.00462 * 7 6 5 9 9 C 1.46846 * 111.00022 * 66.04831 * 8 7 6 10 10 C 1.53034 * 109.52390 * 185.83869 * 9 8 7 11 11 C 1.53121 * 109.27899 * 300.81971 * 10 9 8 12 12 C 1.53117 * 109.16066 * 57.65493 * 11 10 9 13 13 H 1.09000 * 109.50346 * 62.28432 * 12 11 10 14 14 C 1.50696 * 109.50632 * 182.40801 * 12 11 10 15 15 H 1.07998 * 120.00352 * 120.00260 * 14 12 11 16 16 C 1.37886 * 119.99521 * 300.00054 * 14 12 11 17 17 N 1.31507 * 120.00116 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 119.99680 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47073 * 89.99888 * 18 16 14 20 20 H 1.48501 * 109.47115 * 209.99784 * 18 16 14 21 21 H 1.48497 * 109.47424 * 329.99777 * 18 16 14 22 22 C 1.46848 * 110.99763 * 190.25737 * 8 7 6 23 23 N 1.29950 * 107.42752 * 0.02562 * 6 5 4 24 24 O 1.21302 * 110.24715 * 359.69944 * 23 6 5 25 25 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 26 26 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 28 28 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 29 29 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 30 30 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 32 32 H 1.08994 * 109.47456 * 210.00194 * 7 6 5 33 33 H 1.09005 * 109.47193 * 330.01269 * 7 6 5 34 34 H 1.08994 * 109.46477 * 305.85751 * 9 8 7 35 35 H 1.09004 * 109.45858 * 65.82296 * 9 8 7 36 36 H 1.08994 * 109.50698 * 60.76362 * 10 9 8 37 37 H 1.08999 * 109.50347 * 180.88378 * 10 9 8 38 38 H 1.09001 * 109.52370 * 177.56448 * 11 10 9 39 39 H 1.08999 * 109.52395 * 297.68906 * 11 10 9 40 40 H 0.96998 * 120.00092 * 180.02562 * 17 16 14 41 41 H 1.08997 * 109.46466 * 294.17667 * 22 8 7 42 42 H 1.09002 * 109.46557 * 54.15006 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 7 2.7893 -1.7809 -1.2599 6 6 2.9809 -2.0530 -2.5629 7 6 3.7881 -3.1940 -3.1265 8 7 2.9198 -4.3648 -3.3089 9 6 1.9051 -4.1119 -4.3399 10 6 0.9325 -5.2918 -4.4005 11 6 1.7091 -6.5710 -4.7251 12 6 2.7910 -6.7852 -3.6630 13 1 2.3224 -6.9198 -2.6882 14 6 3.5986 -8.0100 -4.0074 15 1 4.6617 -7.9256 -4.1778 16 6 2.9801 -9.2386 -4.1048 17 7 1.6857 -9.3415 -3.8967 18 14 3.9813 -10.7570 -4.5309 19 1 4.4823 -11.3859 -3.2825 20 1 3.1256 -11.7245 -5.2637 21 1 5.1318 -10.3677 -5.3853 22 6 3.7098 -5.5619 -3.6237 23 7 2.3432 -1.1506 -3.2469 24 8 1.7870 -0.3732 -2.5001 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1301 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 4.2095 -2.9009 -4.0880 33 1 4.5947 -3.4438 -2.4372 34 1 1.3573 -3.2020 -4.0950 35 1 2.3925 -3.9928 -5.3076 36 1 0.4346 -5.4030 -3.4374 37 1 0.1888 -5.1109 -5.1766 38 1 1.0267 -7.4209 -4.7267 39 1 2.1743 -6.4756 -5.7062 40 1 1.2507 -10.2057 -3.9649 41 1 4.1886 -5.4361 -4.5948 42 1 4.4727 -5.7052 -2.8585 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595613283.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:00 Heat of formation + Delta-G solvation = 54.832491 kcal Electronic energy + Delta-G solvation = -22077.270906 eV Core-core repulsion = 18867.011552 eV Total energy + Delta-G solvation = -3210.259354 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -45.51882 -38.36454 -36.49275 -35.69643 -33.68968 -31.99200 -31.16406 -29.84270 -27.60285 -27.11726 -24.97634 -24.33221 -23.41388 -22.02878 -21.38014 -20.10495 -18.63166 -18.04543 -17.25265 -16.37830 -16.07631 -15.14652 -14.88394 -14.59405 -14.30055 -13.94729 -13.68085 -13.34772 -12.93126 -12.62058 -12.54876 -12.47905 -12.25571 -11.97106 -11.87293 -11.77880 -11.51557 -11.38568 -11.26893 -10.95282 -10.88108 -10.70266 -10.66639 -10.16745 -9.87257 -9.79352 -9.48439 -9.08773 -8.71276 -8.30387 -7.78861 -5.96756 -4.03159 1.20460 2.31005 2.79668 3.31827 3.38447 3.41256 3.61843 4.06888 4.42023 4.50821 4.59166 4.60999 4.71752 5.09710 5.21582 5.33328 5.36498 5.40337 5.47468 5.49544 5.62782 5.71173 5.77913 5.82684 5.84326 5.88008 6.06234 6.12125 6.23815 6.35609 6.48551 6.69875 6.73099 6.92416 7.19873 7.34995 7.57331 7.69064 7.77203 8.07659 8.17212 8.27410 8.47232 9.00628 9.61064 11.09320 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.035609 B = 0.003439 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.118414 B = 8139.072626 C = 8197.067947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.002 3.998 3 C -0.150 4.150 4 C 0.173 3.827 5 N -0.465 5.465 6 C 0.193 3.807 7 C 0.141 3.859 8 N -0.531 5.531 9 C 0.061 3.939 10 C -0.116 4.116 11 C -0.111 4.111 12 C 0.056 3.944 13 H 0.035 0.965 14 C -0.515 4.515 15 H 0.054 0.946 16 C 0.063 3.937 17 N -0.888 5.888 18 Si 0.891 3.109 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.275 1.275 22 C 0.070 3.930 23 N -0.386 5.386 24 O 0.075 5.925 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.115 0.885 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.103 0.897 34 H 0.055 0.945 35 H 0.027 0.973 36 H 0.059 0.941 37 H 0.047 0.953 38 H 0.092 0.908 39 H 0.031 0.969 40 H 0.260 0.740 41 H 0.023 0.977 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.322 19.975 6.357 21.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.018 4.018 3 C -0.208 4.208 4 C -0.048 4.048 5 N -0.198 5.198 6 C -0.080 4.080 7 C 0.011 3.989 8 N -0.257 5.257 9 C -0.067 4.067 10 C -0.153 4.153 11 C -0.149 4.149 12 C 0.037 3.963 13 H 0.053 0.947 14 C -0.554 4.554 15 H 0.073 0.927 16 C -0.138 4.138 17 N -0.527 5.527 18 Si 0.719 3.281 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.200 1.200 22 C -0.057 4.057 23 N -0.094 5.094 24 O 0.016 5.984 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.095 0.905 28 H 0.133 0.867 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.121 0.879 34 H 0.073 0.927 35 H 0.045 0.955 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.110 0.890 39 H 0.050 0.950 40 H 0.070 0.930 41 H 0.042 0.958 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.457 19.413 6.069 20.391 hybrid contribution 0.830 -0.650 -0.955 1.423 sum -0.627 18.763 5.114 19.457 Atomic orbital electron populations 1.21915 0.92225 1.03421 1.03404 1.19807 0.97009 0.95642 0.89390 1.21907 1.01858 0.93575 1.03461 1.28825 0.94572 0.92604 0.88788 1.71910 1.16461 1.12154 1.19286 1.25793 0.99016 0.97649 0.85584 1.20318 0.93076 0.86092 0.99418 1.61967 1.14984 1.02142 1.46636 1.22095 0.93996 0.98547 0.92060 1.21665 0.97032 0.95968 1.00676 1.21666 0.99510 0.95534 0.98155 1.18665 0.92134 0.89517 0.95965 0.94651 1.21126 0.94409 0.92075 1.47760 0.92741 1.24937 0.94888 0.98783 0.95235 1.69890 1.08766 1.24344 1.49661 0.86610 0.80051 0.82952 0.78457 1.20685 1.21289 1.20009 1.22368 0.96169 0.89235 0.97887 1.74659 1.12577 1.04757 1.17388 1.85238 1.54153 1.43438 1.15534 0.91519 0.91586 0.90539 0.86669 0.90540 0.91893 0.91525 0.92584 0.87898 0.92659 0.95500 0.92226 0.93428 0.88969 0.95035 0.93039 0.95829 0.91765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.18 37.16 0.34 -0.68 16 2 C 0.00 0.01 3.39 -91.77 -0.31 -0.30 16 3 C -0.15 -0.87 9.18 37.16 0.34 -0.53 16 4 C 0.17 2.18 7.02 -13.06 -0.09 2.09 16 5 N -0.47 -7.35 11.55 -9.87 -0.11 -7.47 16 6 C 0.19 3.22 6.85 -156.37 -1.07 2.15 16 7 C 0.14 2.36 5.59 -4.97 -0.03 2.33 16 8 N -0.53 -10.49 4.65 -236.11 -1.10 -11.59 16 9 C 0.06 1.18 5.31 -3.84 -0.02 1.16 16 10 C -0.12 -2.41 6.09 -26.65 -0.16 -2.57 16 11 C -0.11 -2.68 5.02 -26.61 -0.13 -2.81 16 12 C 0.06 1.42 2.26 -91.69 -0.21 1.21 16 13 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 14 C -0.51 -14.17 8.56 -34.44 -0.29 -14.46 16 15 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 16 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 17 N -0.89 -25.51 11.35 55.43 0.63 -24.88 16 18 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 C 0.07 1.50 4.68 -3.83 -0.02 1.48 16 23 N -0.39 -6.26 11.28 30.90 0.35 -5.91 16 24 O 0.07 1.04 11.31 18.09 0.20 1.24 16 25 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.12 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.88 8.12 -51.93 -0.42 0.46 16 33 H 0.10 1.60 7.98 -51.93 -0.41 1.19 16 34 H 0.05 1.05 6.45 -51.93 -0.34 0.71 16 35 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.09 2.48 6.15 -51.93 -0.32 2.16 16 39 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 41 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.06 1.34 8.01 -51.93 -0.42 0.92 16 LS Contribution 338.05 15.07 5.09 5.09 Total: -1.00 -30.61 338.05 -8.65 -39.26 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -6.94 Total: -2.81 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: -1.75 Total: -9.26 kcal Atomic # 7 Polarization: -49.61 SS G_CDS: -0.23 Total: -49.85 kcal Atomic # 8 Polarization: 1.04 SS G_CDS: 0.20 Total: 1.24 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.61 -8.65 -39.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595613283.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.089 kcal (2) G-P(sol) polarization free energy of solvation -30.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds