Wall clock time and date at job start Tue Mar 31 2020 01:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.50698 * 109.47184 * 239.99667 * 2 1 3 5 5 N 1.31129 * 126.55586 * 240.00076 * 4 2 1 6 6 C 1.34489 * 105.61625 * 179.97438 * 5 4 2 7 7 C 1.50701 * 126.28900 * 179.97438 * 6 5 4 8 8 N 1.46903 * 109.46616 * 90.00462 * 7 6 5 9 9 C 1.46846 * 111.00022 * 66.04831 * 8 7 6 10 10 C 1.53034 * 109.52390 * 185.83869 * 9 8 7 11 11 C 1.53121 * 109.27899 * 300.81971 * 10 9 8 12 12 C 1.53117 * 109.16066 * 57.65493 * 11 10 9 13 13 H 1.09000 * 109.50346 * 62.28432 * 12 11 10 14 14 C 1.50696 * 109.50632 * 182.40801 * 12 11 10 15 15 H 1.07998 * 120.00352 * 120.00260 * 14 12 11 16 16 C 1.37886 * 119.99521 * 300.00054 * 14 12 11 17 17 N 1.31507 * 120.00116 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 119.99680 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47073 * 89.99888 * 18 16 14 20 20 H 1.48501 * 109.47115 * 209.99784 * 18 16 14 21 21 H 1.48497 * 109.47424 * 329.99777 * 18 16 14 22 22 C 1.46848 * 110.99763 * 190.25737 * 8 7 6 23 23 N 1.29950 * 107.42752 * 0.02562 * 6 5 4 24 24 O 1.21302 * 110.24715 * 359.69944 * 23 6 5 25 25 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 26 26 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 28 28 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 29 29 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 30 30 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 32 32 H 1.08994 * 109.47456 * 210.00194 * 7 6 5 33 33 H 1.09005 * 109.47193 * 330.01269 * 7 6 5 34 34 H 1.08994 * 109.46477 * 305.85751 * 9 8 7 35 35 H 1.09004 * 109.45858 * 65.82296 * 9 8 7 36 36 H 1.08994 * 109.50698 * 60.76362 * 10 9 8 37 37 H 1.08999 * 109.50347 * 180.88378 * 10 9 8 38 38 H 1.09001 * 109.52370 * 177.56448 * 11 10 9 39 39 H 1.08999 * 109.52395 * 297.68906 * 11 10 9 40 40 H 0.96998 * 120.00092 * 180.02562 * 17 16 14 41 41 H 1.08997 * 109.46466 * 294.17667 * 22 8 7 42 42 H 1.09002 * 109.46557 * 54.15006 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 7 2.7893 -1.7809 -1.2599 6 6 2.9809 -2.0530 -2.5629 7 6 3.7881 -3.1940 -3.1265 8 7 2.9198 -4.3648 -3.3089 9 6 1.9051 -4.1119 -4.3399 10 6 0.9325 -5.2918 -4.4005 11 6 1.7091 -6.5710 -4.7251 12 6 2.7910 -6.7852 -3.6630 13 1 2.3224 -6.9198 -2.6882 14 6 3.5986 -8.0100 -4.0074 15 1 4.6617 -7.9256 -4.1778 16 6 2.9801 -9.2386 -4.1048 17 7 1.6857 -9.3415 -3.8967 18 14 3.9813 -10.7570 -4.5309 19 1 4.4823 -11.3859 -3.2825 20 1 3.1256 -11.7245 -5.2637 21 1 5.1318 -10.3677 -5.3853 22 6 3.7098 -5.5619 -3.6237 23 7 2.3432 -1.1506 -3.2469 24 8 1.7870 -0.3732 -2.5001 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1301 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 4.2095 -2.9009 -4.0880 33 1 4.5947 -3.4438 -2.4372 34 1 1.3573 -3.2020 -4.0950 35 1 2.3925 -3.9928 -5.3076 36 1 0.4346 -5.4030 -3.4374 37 1 0.1888 -5.1109 -5.1766 38 1 1.0267 -7.4209 -4.7267 39 1 2.1743 -6.4756 -5.7062 40 1 1.2507 -10.2057 -3.9649 41 1 4.1886 -5.4361 -4.5948 42 1 4.4727 -5.7052 -2.8585 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595613283.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:00 Heat of formation + Delta-G solvation = 34.561116 kcal Electronic energy + Delta-G solvation = -22078.149939 eV Core-core repulsion = 18867.011552 eV Total energy + Delta-G solvation = -3211.138387 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -46.67109 -40.01666 -37.34771 -36.87570 -35.43803 -33.68127 -32.42655 -31.69539 -28.57308 -28.08167 -26.97346 -25.33192 -24.69650 -23.59687 -23.05494 -21.12449 -20.46178 -19.22556 -18.50310 -18.27052 -16.90080 -16.89301 -16.41716 -16.03472 -15.61416 -15.16047 -15.02931 -14.61906 -14.34746 -14.24429 -13.86684 -13.74261 -13.51590 -13.04892 -13.01809 -12.85590 -12.68789 -12.66587 -12.58271 -12.52301 -12.20375 -12.13344 -11.93570 -11.87781 -11.79364 -11.45765 -11.03587 -10.90710 -10.71007 -10.40615 -9.36075 -8.08539 -6.22903 0.12635 1.12024 1.42484 1.42786 1.53060 1.84958 2.42076 2.54233 2.88784 3.12615 3.18891 3.75879 3.92600 4.00450 4.04239 4.08600 4.18845 4.33056 4.36541 4.48057 4.52689 4.62857 4.67982 4.78789 4.80425 4.85697 4.88825 4.93253 4.95895 5.01814 5.09473 5.11071 5.28527 5.33690 5.35322 5.44586 5.62091 5.85059 6.03927 6.07734 6.14059 6.39945 6.88988 7.15178 7.45128 8.96582 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.035609 B = 0.003439 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.118414 B = 8139.072626 C = 8197.067947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.001 3.999 3 C -0.145 4.145 4 C 0.189 3.811 5 N -0.497 5.497 6 C 0.178 3.822 7 C 0.143 3.857 8 N -0.544 5.544 9 C 0.070 3.930 10 C -0.108 4.108 11 C -0.102 4.102 12 C 0.054 3.946 13 H -0.004 1.004 14 C -0.535 4.535 15 H 0.056 0.944 16 C 0.013 3.987 17 N -0.917 5.917 18 Si 0.957 3.043 19 H -0.276 1.276 20 H -0.284 1.284 21 H -0.267 1.267 22 C 0.083 3.917 23 N -0.400 5.400 24 O 0.079 5.921 25 H 0.067 0.933 26 H 0.048 0.952 27 H 0.105 0.895 28 H 0.123 0.877 29 H 0.104 0.896 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.112 0.888 34 H 0.063 0.937 35 H 0.033 0.967 36 H 0.045 0.955 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.028 0.972 40 H 0.260 0.740 41 H 0.027 0.973 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.957 21.619 6.739 22.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.019 4.019 3 C -0.203 4.203 4 C -0.032 4.032 5 N -0.230 5.230 6 C -0.095 4.095 7 C 0.014 3.986 8 N -0.270 5.270 9 C -0.058 4.058 10 C -0.146 4.146 11 C -0.141 4.141 12 C 0.035 3.965 13 H 0.014 0.986 14 C -0.573 4.573 15 H 0.074 0.926 16 C -0.186 4.186 17 N -0.556 5.556 18 Si 0.782 3.218 19 H -0.202 1.202 20 H -0.210 1.210 21 H -0.191 1.191 22 C -0.043 4.043 23 N -0.108 5.108 24 O 0.020 5.980 25 H 0.086 0.914 26 H 0.067 0.933 27 H 0.124 0.876 28 H 0.141 0.859 29 H 0.122 0.878 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.130 0.870 34 H 0.081 0.919 35 H 0.051 0.949 36 H 0.064 0.936 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.046 0.954 40 H 0.069 0.931 41 H 0.046 0.954 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.083 21.072 6.459 22.066 hybrid contribution 0.659 -1.085 -0.994 1.612 sum -0.424 19.987 5.466 20.725 Atomic orbital electron populations 1.21936 0.91030 1.02761 1.04955 1.20189 0.97838 0.96599 0.87292 1.21918 1.01490 0.91983 1.04909 1.29783 0.92588 0.91470 0.89313 1.71902 1.18206 1.13836 1.19069 1.25743 0.99672 0.97961 0.86136 1.20309 0.92838 0.85039 1.00385 1.61839 1.15557 1.02812 1.46784 1.21983 0.93658 0.97818 0.92340 1.21563 0.97437 0.94991 1.00586 1.21468 0.98875 0.96144 0.97581 1.18578 0.92824 0.91017 0.94061 0.98622 1.21494 0.94758 0.93274 1.47818 0.92555 1.25747 0.95894 1.01811 0.95122 1.70038 1.10240 1.24976 1.50332 0.85576 0.78688 0.79164 0.78329 1.20167 1.21000 1.19139 1.22053 0.95355 0.88656 0.98264 1.74626 1.12934 1.05062 1.18207 1.85205 1.53792 1.42945 1.16044 0.91409 0.93317 0.87603 0.85915 0.87765 0.92480 0.91432 0.91331 0.86971 0.91862 0.94880 0.93621 0.91220 0.92056 0.95355 0.93057 0.95430 0.91348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.18 71.98 0.66 -0.99 16 2 C 0.00 0.01 3.39 -11.54 -0.04 -0.02 16 3 C -0.15 -1.28 9.18 71.98 0.66 -0.62 16 4 C 0.19 4.51 7.02 88.38 0.62 5.13 16 5 N -0.50 -15.34 11.55 -303.19 -3.50 -18.84 16 6 C 0.18 5.79 6.85 138.46 0.95 6.74 16 7 C 0.14 4.68 5.59 85.56 0.48 5.16 16 8 N -0.54 -21.26 4.65 -900.91 -4.19 -25.45 16 9 C 0.07 2.66 5.31 86.32 0.46 3.12 16 10 C -0.11 -4.50 6.09 30.65 0.19 -4.31 16 11 C -0.10 -5.07 5.02 30.67 0.15 -4.92 16 12 C 0.05 2.81 2.26 -11.49 -0.03 2.79 16 13 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 14 C -0.53 -29.84 8.56 25.60 0.22 -29.62 16 15 H 0.06 3.04 7.74 -2.91 -0.02 3.02 16 16 C 0.01 0.73 5.30 84.66 0.45 1.18 16 17 N -0.92 -53.91 11.35 21.45 0.24 -53.67 16 18 Si 0.96 43.98 29.54 68.60 2.03 46.01 16 19 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 20 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 21 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 22 C 0.08 3.60 4.68 86.33 0.40 4.00 16 23 N -0.40 -12.55 11.28 -60.31 -0.68 -13.23 16 24 O 0.08 2.10 11.31 74.79 0.85 2.95 16 25 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.07 0.60 8.14 -2.39 -0.02 0.59 16 32 H 0.07 2.06 8.12 -2.39 -0.02 2.04 16 33 H 0.11 3.39 7.98 -2.38 -0.02 3.38 16 34 H 0.06 2.33 6.45 -2.39 -0.02 2.31 16 35 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 38 H 0.06 3.41 6.15 -2.39 -0.01 3.40 16 39 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 41 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.07 2.85 8.01 -2.39 -0.02 2.83 16 Total: -1.00 -66.74 338.05 0.91 -65.83 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: 0.99 Total: 8.77 kcal Atomic # 6 Polarization: -17.55 SS G_CDS: 5.17 Total: -12.38 kcal Atomic # 7 Polarization: -103.06 SS G_CDS: -8.12 Total: -111.18 kcal Atomic # 8 Polarization: 2.10 SS G_CDS: 0.85 Total: 2.95 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -66.74 0.91 -65.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595613283.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.387 kcal (2) G-P(sol) polarization free energy of solvation -66.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds