Wall clock time and date at job start Tue Mar 31 2020 00:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.47139 * 2 1 4 4 N 1.30277 * 126.28098 * 89.99666 * 3 2 1 5 5 N 1.28670 * 109.37756 * 179.73107 * 4 3 2 6 6 C 1.30272 * 109.38217 * 0.44572 * 5 4 3 7 7 C 1.50698 * 126.28452 * 179.83177 * 6 5 4 8 8 H 1.08997 * 109.47480 * 164.68646 * 7 6 5 9 9 C 1.53007 * 109.46653 * 284.68372 * 7 6 5 10 10 N 1.46899 * 109.47255 * 44.68141 * 7 6 5 11 11 C 1.46847 * 110.99862 * 56.05284 * 10 7 6 12 12 C 1.53044 * 109.51335 * 174.15436 * 11 10 7 13 13 C 1.53119 * 109.27589 * 59.18419 * 12 11 10 14 14 C 1.53120 * 109.16202 * 302.34077 * 13 12 11 15 15 H 1.08996 * 109.50004 * 297.72216 * 14 13 12 16 16 C 1.50699 * 109.50194 * 177.59981 * 14 13 12 17 17 H 1.08001 * 119.99682 * 240.00485 * 16 14 13 18 18 C 1.37871 * 120.00224 * 60.00108 * 16 14 13 19 19 N 1.31517 * 119.99729 * 0.02562 * 18 16 14 20 20 Si 1.86797 * 120.00149 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47075 * 89.99922 * 20 18 16 22 22 H 1.48504 * 109.47261 * 210.00257 * 20 18 16 23 23 H 1.48503 * 109.46891 * 329.99867 * 20 18 16 24 24 C 1.46847 * 110.99299 * 291.84443 * 10 7 6 25 25 O 1.34360 * 126.28164 * 269.99729 * 3 2 1 26 26 H 1.08996 * 109.47193 * 300.00210 * 1 2 3 27 27 H 1.09000 * 109.46874 * 60.00337 * 1 2 3 28 28 H 1.08999 * 109.46718 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47687 * 239.99651 * 2 1 3 30 30 H 1.09000 * 109.46874 * 119.99663 * 2 1 3 31 31 H 1.09002 * 109.46773 * 179.97438 * 9 7 6 32 32 H 1.08997 * 109.46925 * 299.99990 * 9 7 6 33 33 H 1.08997 * 109.46953 * 59.99951 * 9 7 6 34 34 H 1.09002 * 109.46448 * 54.14158 * 11 10 7 35 35 H 1.08994 * 109.45958 * 294.16523 * 11 10 7 36 36 H 1.09000 * 109.49745 * 179.12223 * 12 11 10 37 37 H 1.08999 * 109.49729 * 299.20033 * 12 11 10 38 38 H 1.08993 * 109.52284 * 62.25342 * 13 12 11 39 39 H 1.09003 * 109.51690 * 182.37761 * 13 12 11 40 40 H 0.97004 * 119.99861 * 179.97438 * 19 18 16 41 41 H 1.09005 * 109.46836 * 65.83946 * 24 10 7 42 42 H 1.08994 * 109.46332 * 305.85962 * 24 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2893 2.1476 1.0502 5 7 2.7050 3.3064 0.6761 6 6 2.7185 3.3615 -0.6254 7 6 3.1360 4.5420 -1.4638 8 1 3.3034 4.2174 -2.4908 9 6 2.0328 5.6019 -1.4374 10 7 4.3765 5.1129 -0.9224 11 6 5.4336 4.0965 -0.8450 12 6 6.7465 4.7561 -0.4165 13 6 6.5547 5.4248 0.9475 14 6 5.4159 6.4440 0.8519 15 1 5.6824 7.2211 0.1356 16 6 5.1812 7.0646 2.2049 17 1 4.2183 6.9667 2.6842 18 6 6.1957 7.7571 2.8311 19 7 7.3681 7.8766 2.2472 20 14 5.9045 8.5270 4.5079 21 1 6.2538 7.5487 5.5691 22 1 6.7534 9.7370 4.6513 23 1 4.4748 8.9074 4.6364 24 6 4.1416 5.7356 0.3866 25 8 2.2974 2.1704 -1.0831 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.3350 6.4560 -2.0435 32 1 1.1124 5.1782 -1.8391 33 1 1.8654 5.9265 -0.4105 34 1 5.5628 3.6316 -1.8224 35 1 5.1539 3.3366 -0.1155 36 1 7.5273 3.9990 -0.3440 37 1 7.0341 5.5062 -1.1531 38 1 6.3054 4.6688 1.6920 39 1 7.4751 5.9318 1.2372 40 1 8.0817 8.3642 2.6876 41 1 3.8682 4.9677 1.1104 42 1 3.3324 6.4610 0.3037 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595613300.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:49:55 Heat of formation + Delta-G solvation = 34.007072 kcal Electronic energy + Delta-G solvation = -22841.155071 eV Core-core repulsion = 19629.992660 eV Total energy + Delta-G solvation = -3211.162412 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.08886 -38.74718 -35.97660 -35.03068 -34.16206 -32.47488 -29.93704 -29.78850 -29.00534 -25.30989 -24.88617 -24.37624 -23.02996 -21.87811 -21.28764 -20.50736 -18.66979 -17.36759 -16.81743 -16.44663 -15.58846 -15.47205 -15.00750 -14.42875 -14.22426 -14.15771 -13.46000 -13.01938 -12.84242 -12.65825 -12.58760 -12.26042 -12.14215 -12.07174 -12.02947 -11.63523 -11.60797 -11.45567 -11.15301 -10.89399 -10.64774 -10.61159 -10.52291 -10.05150 -9.75262 -9.46072 -9.31948 -8.97979 -8.64182 -8.25990 -7.91280 -5.90168 -3.94994 1.27021 2.33526 2.56406 3.37504 3.43595 3.47651 3.80215 4.18884 4.46282 4.54470 4.75387 4.76051 4.96782 5.04789 5.15501 5.36519 5.39249 5.39790 5.52264 5.59649 5.62787 5.68488 5.73534 5.80238 5.83136 5.97678 6.02826 6.22299 6.27994 6.53229 6.59478 6.73453 6.85601 7.09570 7.22671 7.36950 7.55687 7.69792 7.84903 8.14373 8.23509 8.50221 8.56606 9.08799 9.68874 11.16096 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.021964 B = 0.004770 C = 0.004460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.530165 B = 5869.118948 C = 6276.269432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.023 4.023 3 C 0.144 3.856 4 N -0.286 5.286 5 N -0.270 5.270 6 C 0.141 3.859 7 C 0.173 3.827 8 H 0.105 0.895 9 C -0.145 4.145 10 N -0.504 5.504 11 C 0.056 3.944 12 C -0.115 4.115 13 C -0.111 4.111 14 C 0.057 3.943 15 H 0.032 0.968 16 C -0.508 4.508 17 H 0.055 0.945 18 C 0.062 3.938 19 N -0.891 5.891 20 Si 0.889 3.111 21 H -0.282 1.282 22 H -0.288 1.288 23 H -0.274 1.274 24 C 0.041 3.959 25 O -0.231 6.231 26 H 0.065 0.935 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.094 0.906 30 H 0.108 0.892 31 H 0.085 0.915 32 H 0.058 0.942 33 H 0.075 0.925 34 H 0.057 0.943 35 H 0.026 0.974 36 H 0.047 0.953 37 H 0.063 0.937 38 H 0.031 0.969 39 H 0.092 0.908 40 H 0.258 0.742 41 H 0.063 0.937 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.534 -13.439 -9.652 19.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.062 4.062 3 C -0.068 4.068 4 N -0.132 5.132 5 N -0.116 5.116 6 C -0.072 4.072 7 C 0.061 3.939 8 H 0.123 0.877 9 C -0.203 4.203 10 N -0.227 5.227 11 C -0.071 4.071 12 C -0.152 4.152 13 C -0.149 4.149 14 C 0.039 3.961 15 H 0.050 0.950 16 C -0.547 4.547 17 H 0.073 0.927 18 C -0.138 4.138 19 N -0.530 5.530 20 Si 0.718 3.282 21 H -0.208 1.208 22 H -0.214 1.214 23 H -0.199 1.199 24 C -0.085 4.085 25 O -0.110 6.110 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.093 0.907 29 H 0.112 0.888 30 H 0.126 0.874 31 H 0.104 0.896 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.076 0.924 35 H 0.045 0.955 36 H 0.066 0.934 37 H 0.081 0.919 38 H 0.049 0.951 39 H 0.110 0.890 40 H 0.068 0.932 41 H 0.081 0.919 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.052 -12.620 -8.697 18.329 hybrid contribution -0.394 -0.692 0.312 0.855 sum -10.446 -13.312 -8.385 18.885 Atomic orbital electron populations 1.21790 0.92874 1.03068 1.03107 1.20075 0.96971 0.83716 1.05404 1.27977 1.00520 0.98027 0.80251 1.74438 1.14179 0.98850 1.25770 1.74565 1.15865 1.12032 1.09124 1.30207 0.97001 0.87077 0.92921 1.20858 0.92171 0.84819 0.96082 0.87729 1.21968 0.95755 0.98110 1.04492 1.62658 1.02645 1.27722 1.29661 1.22139 0.93206 0.92841 0.98942 1.21661 0.93817 0.99100 1.00671 1.21670 1.03715 0.97513 0.92047 1.18651 0.88730 0.92966 0.95793 0.94994 1.21144 0.98020 1.32726 1.02841 0.92704 1.24916 0.95216 0.96184 0.97533 1.69895 1.02833 1.42202 1.38071 0.86635 0.78116 0.78746 0.84736 1.20817 1.21351 1.19940 1.22843 1.01200 0.98251 0.86190 1.84797 1.64005 1.23577 1.38575 0.91579 0.92154 0.90686 0.88795 0.87357 0.89581 0.92309 0.90569 0.92407 0.95537 0.93436 0.91861 0.95056 0.89011 0.93181 0.91919 0.91565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.89 37.16 0.37 -0.71 16 2 C -0.02 -0.20 6.56 -27.88 -0.18 -0.38 16 3 C 0.14 2.02 7.73 -12.94 -0.10 1.92 16 4 N -0.29 -5.08 12.22 32.55 0.40 -4.69 16 5 N -0.27 -5.22 9.23 32.55 0.30 -4.92 16 6 C 0.14 2.34 5.75 -12.94 -0.07 2.27 16 7 C 0.17 2.61 3.05 -68.86 -0.21 2.40 16 8 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 9 C -0.15 -1.94 8.68 37.16 0.32 -1.62 16 10 N -0.50 -9.26 4.71 -228.07 -1.07 -10.34 16 11 C 0.06 1.03 4.98 -3.83 -0.02 1.02 16 12 C -0.11 -2.30 6.09 -26.65 -0.16 -2.46 16 13 C -0.11 -2.73 5.02 -26.61 -0.13 -2.86 16 14 C 0.06 1.46 2.26 -91.69 -0.21 1.26 16 15 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 16 C -0.51 -14.31 8.56 -34.44 -0.29 -14.61 16 17 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 18 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 19 N -0.89 -25.79 11.35 55.43 0.63 -25.16 16 20 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 21 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 23 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 24 C 0.04 0.90 3.89 -3.83 -0.01 0.89 16 25 O -0.23 -3.43 10.87 5.38 0.06 -3.37 16 26 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.11 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.08 1.17 6.19 -51.93 -0.32 0.84 16 34 H 0.06 0.91 8.12 -51.93 -0.42 0.49 16 35 H 0.03 0.53 6.94 -51.93 -0.36 0.17 16 36 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.09 2.48 6.15 -51.93 -0.32 2.16 16 40 H 0.26 7.15 8.31 -40.82 -0.34 6.82 16 41 H 0.06 1.48 5.64 -51.93 -0.29 1.18 16 42 H 0.07 1.41 5.84 -51.93 -0.30 1.10 16 LS Contribution 329.67 15.07 4.97 4.97 Total: -1.00 -31.64 329.67 -7.18 -38.81 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -6.63 Total: -0.92 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: -0.80 Total: -11.22 kcal Atomic # 7 Polarization: -45.36 SS G_CDS: 0.25 Total: -45.10 kcal Atomic # 8 Polarization: -3.43 SS G_CDS: 0.06 Total: -3.37 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.64 -7.18 -38.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595613300.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.822 kcal (2) G-P(sol) polarization free energy of solvation -31.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds