Wall clock time and date at job start Tue Mar 31 2020 01:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47263 * 2 1 4 4 C 1.50706 * 109.47182 * 179.97438 * 3 2 1 5 5 N 1.31132 * 126.54779 * 89.99966 * 4 3 2 6 6 C 1.34499 * 105.61063 * 180.02562 * 5 4 3 7 7 C 1.50694 * 126.28692 * 179.97438 * 6 5 4 8 8 N 1.46907 * 109.47035 * 89.99831 * 7 6 5 9 9 C 1.46842 * 110.99676 * 66.04843 * 8 7 6 10 10 C 1.53036 * 109.52190 * 185.84074 * 9 8 7 11 11 C 1.53123 * 109.27788 * 300.81892 * 10 9 8 12 12 C 1.53123 * 109.16001 * 57.65365 * 11 10 9 13 13 H 1.08998 * 109.53365 * 62.30832 * 12 11 10 14 14 C 1.50697 * 109.50101 * 182.40587 * 12 11 10 15 15 H 1.07998 * 119.99675 * 119.80966 * 14 12 11 16 16 C 1.37883 * 120.00267 * 299.80295 * 14 12 11 17 17 N 1.31512 * 119.99590 * 0.02562 * 16 14 12 18 18 Si 1.86793 * 120.00229 * 180.02562 * 16 14 12 19 19 H 1.48490 * 109.47417 * 89.99561 * 18 16 14 20 20 H 1.48499 * 109.47245 * 210.00055 * 18 16 14 21 21 H 1.48505 * 109.46993 * 329.99686 * 18 16 14 22 22 C 1.46848 * 110.99958 * 190.25905 * 8 7 6 23 23 N 1.29948 * 107.42177 * 0.24102 * 6 5 4 24 24 O 1.21298 * 110.25495 * 359.58144 * 23 6 5 25 25 H 1.08997 * 109.47034 * 59.99639 * 1 2 3 26 26 H 1.09000 * 109.47111 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46854 * 300.00248 * 1 2 3 28 28 H 1.08997 * 109.47301 * 239.99556 * 2 1 3 29 29 H 1.09005 * 109.47254 * 120.00142 * 2 1 3 30 30 H 1.08998 * 109.46890 * 60.00203 * 3 2 1 31 31 H 1.08997 * 109.47391 * 300.00143 * 3 2 1 32 32 H 1.09004 * 109.47123 * 330.00539 * 7 6 5 33 33 H 1.08994 * 109.47434 * 210.00057 * 7 6 5 34 34 H 1.09002 * 109.46766 * 65.82407 * 9 8 7 35 35 H 1.09000 * 109.46420 * 305.85141 * 9 8 7 36 36 H 1.09000 * 109.50632 * 60.76184 * 10 9 8 37 37 H 1.09006 * 109.50216 * 180.87978 * 10 9 8 38 38 H 1.09000 * 109.52561 * 177.56017 * 11 10 9 39 39 H 1.09007 * 109.52268 * 297.75177 * 11 10 9 40 40 H 0.97005 * 119.99751 * 180.02562 * 17 16 14 41 41 H 1.09003 * 109.46014 * 294.17985 * 22 8 7 42 42 H 1.08995 * 109.46374 * 54.14015 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4425 0.0006 5 7 4.3284 1.4423 -1.0525 6 6 5.5844 1.4418 -0.5713 7 6 6.8518 1.4408 -1.3866 8 7 7.2643 2.8256 -1.6520 9 6 7.6487 3.5074 -0.4095 10 6 7.9314 4.9827 -0.7021 11 6 9.0588 5.0865 -1.7331 12 6 8.6531 4.3274 -2.9995 13 1 7.7652 4.7884 -3.4321 14 6 9.7814 4.3747 -3.9975 15 1 10.2366 3.4579 -4.3416 16 6 10.2323 5.5885 -4.4713 17 7 9.6781 6.7050 -4.0519 18 14 11.6303 5.6471 -5.7088 19 1 11.0754 5.5970 -7.0852 20 1 12.3974 6.9060 -5.5298 21 1 12.5296 4.4848 -5.4950 22 6 8.3494 2.8712 -2.6403 23 7 5.5042 1.4364 0.7256 24 8 4.3425 1.4420 1.0746 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8934 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9564 -0.8899 32 1 6.6755 0.9269 -2.3316 33 1 7.6385 0.9268 -0.8346 34 1 8.5446 3.0400 -0.0009 35 1 6.8367 3.4297 0.3135 36 1 7.0318 5.4541 -1.0978 37 1 8.2318 5.4850 0.2175 38 1 9.2341 6.1344 -1.9769 39 1 9.9692 4.6498 -1.3225 40 1 9.9950 7.5590 -4.3856 41 1 9.2421 2.4067 -2.2213 42 1 8.0465 2.3314 -3.5374 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595614701.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:10 Heat of formation + Delta-G solvation = 52.141638 kcal Electronic energy + Delta-G solvation = -21807.068481 eV Core-core repulsion = 18596.692443 eV Total energy + Delta-G solvation = -3210.376038 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -45.51939 -38.36468 -36.25561 -35.55034 -33.72137 -32.29470 -31.47828 -29.87252 -27.95974 -27.11859 -24.96005 -23.71312 -22.69609 -21.98383 -21.46011 -20.68216 -18.63242 -18.04263 -17.36224 -16.37907 -15.70646 -15.35695 -15.12922 -14.70172 -14.31600 -13.96120 -13.75081 -13.37429 -13.09077 -12.78599 -12.47533 -12.39999 -12.13855 -12.02593 -11.87231 -11.82946 -11.50961 -11.26822 -11.12949 -10.95463 -10.89534 -10.70307 -10.66730 -10.16558 -9.87051 -9.79052 -9.48483 -9.08856 -8.71394 -8.30486 -7.79074 -5.96923 -4.03238 1.19132 2.30225 2.80327 3.31745 3.38370 3.41137 3.65779 4.08189 4.41990 4.52749 4.58700 4.61523 4.69970 5.08264 5.14622 5.26998 5.33264 5.35511 5.44616 5.56690 5.65436 5.70894 5.73348 5.83469 5.85410 5.87396 6.06086 6.10940 6.23639 6.35453 6.48452 6.69760 6.72990 6.92276 7.19736 7.34779 7.57138 7.68904 7.77103 8.07526 8.16969 8.26681 8.47094 9.00583 9.60979 11.09254 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.034751 B = 0.003246 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.548283 B = 8623.791785 C = 8827.177723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.025 4.025 4 C 0.169 3.831 5 N -0.464 5.464 6 C 0.193 3.807 7 C 0.141 3.859 8 N -0.531 5.531 9 C 0.061 3.939 10 C -0.116 4.116 11 C -0.111 4.111 12 C 0.056 3.944 13 H 0.036 0.964 14 C -0.515 4.515 15 H 0.054 0.946 16 C 0.063 3.937 17 N -0.888 5.888 18 Si 0.891 3.109 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.275 1.275 22 C 0.070 3.930 23 N -0.385 5.385 24 O 0.073 5.927 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.100 0.900 31 H 0.110 0.890 32 H 0.103 0.897 33 H 0.056 0.944 34 H 0.027 0.973 35 H 0.055 0.945 36 H 0.059 0.941 37 H 0.047 0.953 38 H 0.092 0.908 39 H 0.031 0.969 40 H 0.260 0.740 41 H 0.023 0.977 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.399 -11.337 9.680 21.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.064 4.064 4 C -0.052 4.052 5 N -0.197 5.197 6 C -0.080 4.080 7 C 0.011 3.989 8 N -0.257 5.257 9 C -0.067 4.067 10 C -0.153 4.153 11 C -0.149 4.149 12 C 0.037 3.963 13 H 0.054 0.946 14 C -0.553 4.553 15 H 0.073 0.927 16 C -0.139 4.139 17 N -0.527 5.527 18 Si 0.719 3.281 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.200 1.200 22 C -0.056 4.056 23 N -0.094 5.094 24 O 0.014 5.986 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.118 0.882 31 H 0.128 0.872 32 H 0.121 0.879 33 H 0.074 0.926 34 H 0.045 0.955 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.110 0.890 39 H 0.050 0.950 40 H 0.070 0.930 41 H 0.042 0.958 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.954 -10.900 9.538 20.818 hybrid contribution 1.353 -0.278 -0.227 1.399 sum -13.601 -11.178 9.312 19.916 Atomic orbital electron populations 1.21748 0.94395 1.02335 1.02363 1.21540 0.96711 0.94432 1.03348 1.20269 0.80343 0.99832 1.05955 1.28819 0.98569 0.96855 0.80968 1.71904 1.00294 1.18957 1.28577 1.25796 0.95348 0.99087 0.87767 1.20317 0.87820 0.92973 0.97800 1.61968 1.41004 1.11326 1.11436 1.22094 0.97825 0.96263 0.90509 1.21668 1.00946 0.93447 0.99284 1.21669 0.94115 1.04577 0.94505 1.18666 0.96747 0.87950 0.92939 0.94633 1.21124 1.17566 0.92433 1.24218 0.92746 1.24938 0.96745 0.95729 0.96447 1.69897 1.41811 0.97408 1.43565 0.86609 0.82352 0.77371 0.81731 1.20685 1.21286 1.20014 1.22364 0.88932 1.01899 0.92449 1.74652 0.97171 1.21484 1.16070 1.85261 1.11562 1.65872 1.35880 0.92138 0.92142 0.92268 0.90918 0.91255 0.88162 0.87213 0.87899 0.92589 0.95497 0.92662 0.92214 0.93423 0.88988 0.95031 0.93038 0.95835 0.91764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 9.91 37.16 0.37 -0.33 16 2 C -0.12 -0.75 5.92 -26.73 -0.16 -0.91 16 3 C -0.02 -0.18 5.84 -27.88 -0.16 -0.34 16 4 C 0.17 2.07 7.77 -13.06 -0.10 1.97 16 5 N -0.46 -7.21 11.55 -9.87 -0.11 -7.32 16 6 C 0.19 3.20 6.84 -156.37 -1.07 2.13 16 7 C 0.14 2.35 5.59 -4.98 -0.03 2.32 16 8 N -0.53 -10.46 4.65 -236.12 -1.10 -11.56 16 9 C 0.06 1.18 5.31 -3.84 -0.02 1.16 16 10 C -0.12 -2.40 6.09 -26.65 -0.16 -2.57 16 11 C -0.11 -2.68 5.03 -26.60 -0.13 -2.81 16 12 C 0.06 1.42 2.26 -91.69 -0.21 1.21 16 13 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 14 C -0.51 -14.14 8.56 -34.44 -0.29 -14.44 16 15 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 16 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 17 N -0.89 -25.53 11.36 55.43 0.63 -24.90 16 18 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 C 0.07 1.50 4.68 -3.84 -0.02 1.48 16 23 N -0.39 -6.21 11.30 30.90 0.35 -5.86 16 24 O 0.07 1.00 11.31 18.11 0.20 1.20 16 25 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.11 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.10 1.59 7.98 -51.93 -0.41 1.18 16 33 H 0.06 0.88 8.12 -51.93 -0.42 0.46 16 34 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.05 1.04 6.46 -51.93 -0.34 0.71 16 36 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.09 2.47 6.16 -51.93 -0.32 2.15 16 39 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 41 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.06 1.34 8.01 -51.93 -0.42 0.92 16 LS Contribution 338.77 15.07 5.11 5.11 Total: -1.00 -30.63 338.77 -8.97 -39.60 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -6.95 Total: -3.10 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: -2.08 Total: -9.49 kcal Atomic # 7 Polarization: -49.41 SS G_CDS: -0.23 Total: -49.64 kcal Atomic # 8 Polarization: 1.00 SS G_CDS: 0.20 Total: 1.20 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.63 -8.97 -39.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595614701.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.746 kcal (2) G-P(sol) polarization free energy of solvation -30.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds