Wall clock time and date at job start Tue Mar 31 2020 01:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47263 * 2 1 4 4 C 1.50706 * 109.47182 * 179.97438 * 3 2 1 5 5 N 1.31132 * 126.54779 * 89.99966 * 4 3 2 6 6 C 1.34499 * 105.61063 * 180.02562 * 5 4 3 7 7 C 1.50694 * 126.28692 * 179.97438 * 6 5 4 8 8 N 1.46907 * 109.47035 * 89.99831 * 7 6 5 9 9 C 1.46842 * 110.99676 * 66.04843 * 8 7 6 10 10 C 1.53036 * 109.52190 * 185.84074 * 9 8 7 11 11 C 1.53123 * 109.27788 * 300.81892 * 10 9 8 12 12 C 1.53123 * 109.16001 * 57.65365 * 11 10 9 13 13 H 1.08998 * 109.53365 * 62.30832 * 12 11 10 14 14 C 1.50697 * 109.50101 * 182.40587 * 12 11 10 15 15 H 1.07998 * 119.99675 * 119.80966 * 14 12 11 16 16 C 1.37883 * 120.00267 * 299.80295 * 14 12 11 17 17 N 1.31512 * 119.99590 * 0.02562 * 16 14 12 18 18 Si 1.86793 * 120.00229 * 180.02562 * 16 14 12 19 19 H 1.48490 * 109.47417 * 89.99561 * 18 16 14 20 20 H 1.48499 * 109.47245 * 210.00055 * 18 16 14 21 21 H 1.48505 * 109.46993 * 329.99686 * 18 16 14 22 22 C 1.46848 * 110.99958 * 190.25905 * 8 7 6 23 23 N 1.29948 * 107.42177 * 0.24102 * 6 5 4 24 24 O 1.21298 * 110.25495 * 359.58144 * 23 6 5 25 25 H 1.08997 * 109.47034 * 59.99639 * 1 2 3 26 26 H 1.09000 * 109.47111 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46854 * 300.00248 * 1 2 3 28 28 H 1.08997 * 109.47301 * 239.99556 * 2 1 3 29 29 H 1.09005 * 109.47254 * 120.00142 * 2 1 3 30 30 H 1.08998 * 109.46890 * 60.00203 * 3 2 1 31 31 H 1.08997 * 109.47391 * 300.00143 * 3 2 1 32 32 H 1.09004 * 109.47123 * 330.00539 * 7 6 5 33 33 H 1.08994 * 109.47434 * 210.00057 * 7 6 5 34 34 H 1.09002 * 109.46766 * 65.82407 * 9 8 7 35 35 H 1.09000 * 109.46420 * 305.85141 * 9 8 7 36 36 H 1.09000 * 109.50632 * 60.76184 * 10 9 8 37 37 H 1.09006 * 109.50216 * 180.87978 * 10 9 8 38 38 H 1.09000 * 109.52561 * 177.56017 * 11 10 9 39 39 H 1.09007 * 109.52268 * 297.75177 * 11 10 9 40 40 H 0.97005 * 119.99751 * 180.02562 * 17 16 14 41 41 H 1.09003 * 109.46014 * 294.17985 * 22 8 7 42 42 H 1.08995 * 109.46374 * 54.14015 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4425 0.0006 5 7 4.3284 1.4423 -1.0525 6 6 5.5844 1.4418 -0.5713 7 6 6.8518 1.4408 -1.3866 8 7 7.2643 2.8256 -1.6520 9 6 7.6487 3.5074 -0.4095 10 6 7.9314 4.9827 -0.7021 11 6 9.0588 5.0865 -1.7331 12 6 8.6531 4.3274 -2.9995 13 1 7.7652 4.7884 -3.4321 14 6 9.7814 4.3747 -3.9975 15 1 10.2366 3.4579 -4.3416 16 6 10.2323 5.5885 -4.4713 17 7 9.6781 6.7050 -4.0519 18 14 11.6303 5.6471 -5.7088 19 1 11.0754 5.5970 -7.0852 20 1 12.3974 6.9060 -5.5298 21 1 12.5296 4.4848 -5.4950 22 6 8.3494 2.8712 -2.6403 23 7 5.5042 1.4364 0.7256 24 8 4.3425 1.4420 1.0746 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8934 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9564 -0.8899 32 1 6.6755 0.9269 -2.3316 33 1 7.6385 0.9268 -0.8346 34 1 8.5446 3.0400 -0.0009 35 1 6.8367 3.4297 0.3135 36 1 7.0318 5.4541 -1.0978 37 1 8.2318 5.4850 0.2175 38 1 9.2341 6.1344 -1.9769 39 1 9.9692 4.6498 -1.3225 40 1 9.9950 7.5590 -4.3856 41 1 9.2421 2.4067 -2.2213 42 1 8.0465 2.3314 -3.5374 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595614701.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:09 Heat of formation + Delta-G solvation = 32.064529 kcal Electronic energy + Delta-G solvation = -21807.939090 eV Core-core repulsion = 18596.692443 eV Total energy + Delta-G solvation = -3211.246647 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -46.65170 -40.00958 -37.24680 -36.54838 -35.39462 -33.76076 -32.84841 -31.73491 -28.69681 -28.49121 -26.96235 -24.93995 -23.96090 -23.32322 -22.78617 -21.77015 -20.45739 -19.20033 -18.56482 -18.32680 -16.89678 -16.54717 -16.36091 -16.09737 -15.89088 -15.27977 -15.05020 -14.63635 -14.35413 -14.31698 -13.91768 -13.77890 -13.54093 -13.07722 -12.86896 -12.85689 -12.78834 -12.65179 -12.53536 -12.49426 -12.15589 -12.05382 -11.91973 -11.79113 -11.58745 -11.45380 -11.01385 -10.88161 -10.70736 -10.40481 -9.35513 -8.08610 -6.22805 0.13930 1.13362 1.42433 1.42744 1.52968 1.87991 2.42244 2.57550 2.91835 3.14157 3.18962 3.81193 4.01320 4.01601 4.06542 4.11312 4.20511 4.32302 4.38213 4.50580 4.54356 4.62999 4.69808 4.72682 4.79329 4.80825 4.89186 4.95536 4.96557 5.04205 5.09854 5.25253 5.28932 5.30508 5.44830 5.49015 5.62245 5.85462 6.04288 6.08352 6.14189 6.40134 6.89178 7.17030 7.45206 8.96643 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.034751 B = 0.003246 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.548283 B = 8623.791785 C = 8827.177723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.117 4.117 3 C -0.025 4.025 4 C 0.186 3.814 5 N -0.496 5.496 6 C 0.178 3.822 7 C 0.143 3.857 8 N -0.544 5.544 9 C 0.070 3.930 10 C -0.108 4.108 11 C -0.103 4.103 12 C 0.054 3.946 13 H -0.004 1.004 14 C -0.534 4.534 15 H 0.056 0.944 16 C 0.013 3.987 17 N -0.917 5.917 18 Si 0.957 3.043 19 H -0.276 1.276 20 H -0.284 1.284 21 H -0.267 1.267 22 C 0.084 3.916 23 N -0.400 5.400 24 O 0.077 5.923 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.058 0.942 29 H 0.071 0.929 30 H 0.129 0.871 31 H 0.117 0.883 32 H 0.112 0.888 33 H 0.068 0.932 34 H 0.033 0.967 35 H 0.064 0.936 36 H 0.045 0.955 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.027 0.973 40 H 0.260 0.740 41 H 0.027 0.973 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.262 -12.422 10.428 22.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.156 4.156 3 C -0.063 4.063 4 C -0.034 4.034 5 N -0.229 5.229 6 C -0.095 4.095 7 C 0.014 3.986 8 N -0.270 5.270 9 C -0.058 4.058 10 C -0.146 4.146 11 C -0.141 4.141 12 C 0.035 3.965 13 H 0.014 0.986 14 C -0.573 4.573 15 H 0.074 0.926 16 C -0.186 4.186 17 N -0.556 5.556 18 Si 0.782 3.218 19 H -0.202 1.202 20 H -0.210 1.210 21 H -0.192 1.192 22 C -0.043 4.043 23 N -0.109 5.109 24 O 0.018 5.982 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.077 0.923 29 H 0.090 0.910 30 H 0.147 0.853 31 H 0.135 0.865 32 H 0.130 0.870 33 H 0.086 0.914 34 H 0.051 0.949 35 H 0.082 0.918 36 H 0.064 0.936 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.046 0.954 40 H 0.069 0.931 41 H 0.045 0.955 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.828 -12.003 10.286 22.370 hybrid contribution 1.502 0.051 -0.427 1.562 sum -14.327 -11.952 9.860 21.103 Atomic orbital electron populations 1.21730 0.92874 1.02824 1.03071 1.21510 0.97868 0.93385 1.02806 1.20649 0.76935 1.01006 1.07749 1.29728 0.99935 0.93982 0.79725 1.71898 1.00390 1.20687 1.29947 1.25728 0.95616 1.00139 0.88032 1.20301 0.88466 0.91101 0.98708 1.61841 1.40136 1.13637 1.11357 1.21983 0.98344 0.94934 0.90526 1.21565 0.98919 0.95046 0.99045 1.21472 0.95228 1.02309 0.95086 1.18580 0.94546 0.90393 0.92989 0.98587 1.21491 1.18215 0.92653 1.24912 0.92572 1.25747 0.99172 0.95398 0.98278 1.70044 1.43109 0.97854 1.44629 0.85578 0.79356 0.77527 0.79313 1.20160 1.20999 1.19155 1.22046 0.89803 0.99104 0.93356 1.74621 0.98374 1.21974 1.15904 1.85230 1.11129 1.65718 1.36117 0.91943 0.91810 0.91063 0.92310 0.91044 0.85253 0.86461 0.87016 0.91398 0.94918 0.91794 0.93575 0.91219 0.92085 0.95369 0.93057 0.95467 0.91363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.91 71.98 0.71 -0.27 16 2 C -0.12 -1.20 5.92 30.59 0.18 -1.02 16 3 C -0.02 -0.30 5.84 29.85 0.17 -0.12 16 4 C 0.19 4.24 7.77 88.38 0.69 4.93 16 5 N -0.50 -14.90 11.55 -303.18 -3.50 -18.40 16 6 C 0.18 5.70 6.84 138.46 0.95 6.64 16 7 C 0.14 4.64 5.59 85.55 0.48 5.11 16 8 N -0.54 -21.13 4.65 -900.95 -4.19 -25.31 16 9 C 0.07 2.64 5.31 86.33 0.46 3.10 16 10 C -0.11 -4.48 6.09 30.65 0.19 -4.29 16 11 C -0.10 -5.07 5.03 30.68 0.15 -4.92 16 12 C 0.05 2.79 2.26 -11.49 -0.03 2.77 16 13 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 14 C -0.53 -29.76 8.56 25.60 0.22 -29.54 16 15 H 0.06 3.03 7.74 -2.91 -0.02 3.01 16 16 C 0.01 0.71 5.30 84.66 0.45 1.16 16 17 N -0.92 -53.94 11.36 21.45 0.24 -53.70 16 18 Si 0.96 43.97 29.54 68.60 2.03 46.00 16 19 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 20 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 21 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 22 C 0.08 3.60 4.68 86.32 0.40 4.00 16 23 N -0.40 -12.35 11.30 -60.32 -0.68 -13.03 16 24 O 0.08 1.99 11.31 74.88 0.85 2.84 16 25 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 26 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 27 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 28 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 30 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.11 3.36 7.98 -2.39 -0.02 3.34 16 33 H 0.07 2.03 8.12 -2.39 -0.02 2.01 16 34 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.06 2.33 6.46 -2.39 -0.02 2.31 16 36 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.07 2.55 8.14 -2.38 -0.02 2.53 16 38 H 0.06 3.39 6.16 -2.39 -0.01 3.37 16 39 H 0.03 1.36 8.14 -2.38 -0.02 1.35 16 40 H 0.26 14.56 8.31 -92.70 -0.77 13.78 16 41 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.07 2.84 8.01 -2.39 -0.02 2.82 16 Total: -1.00 -66.55 338.77 0.76 -65.78 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: 0.99 Total: 8.27 kcal Atomic # 6 Polarization: -17.47 SS G_CDS: 5.03 Total: -12.44 kcal Atomic # 7 Polarization: -102.32 SS G_CDS: -8.13 Total: -110.45 kcal Atomic # 8 Polarization: 1.99 SS G_CDS: 0.85 Total: 2.84 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -66.55 0.76 -65.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595614701.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.848 kcal (2) G-P(sol) polarization free energy of solvation -66.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds