Wall clock time and date at job start Tue Mar 31 2020 01:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.47202 * 2 1 4 4 C 1.50701 * 109.46789 * 119.99786 * 2 1 3 5 5 N 1.30274 * 126.28377 * 299.99640 * 4 2 1 6 6 N 1.28662 * 109.38454 * 179.73297 * 5 4 2 7 7 C 1.30276 * 109.37935 * 0.44613 * 6 5 4 8 8 C 1.50703 * 126.28506 * 179.82558 * 7 6 5 9 9 N 1.46899 * 109.47107 * 89.68812 * 8 7 6 10 10 C 1.46847 * 111.00044 * 66.04660 * 9 8 7 11 11 C 1.53032 * 109.52682 * 174.15899 * 10 9 8 12 12 C 1.53124 * 109.27817 * 59.17958 * 11 10 9 13 13 C 1.53115 * 109.15950 * 302.35012 * 12 11 10 14 14 H 1.09005 * 109.50024 * 297.71177 * 13 12 11 15 15 C 1.50698 * 109.50212 * 177.63386 * 13 12 11 16 16 H 1.07998 * 119.99844 * 239.99633 * 15 13 12 17 17 C 1.37880 * 120.00123 * 59.99838 * 15 13 12 18 18 N 1.31506 * 119.99974 * 359.97438 * 17 15 13 19 19 Si 1.86803 * 119.99991 * 179.97438 * 17 15 13 20 20 H 1.48507 * 109.47039 * 59.99769 * 19 17 15 21 21 H 1.48496 * 109.47039 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47184 * 300.00167 * 19 17 15 23 23 C 1.46842 * 111.00224 * 301.83739 * 9 8 7 24 24 O 1.34361 * 126.28414 * 120.00116 * 4 2 1 25 25 H 1.08998 * 109.46981 * 300.00234 * 1 2 3 26 26 H 1.08997 * 109.46930 * 60.00162 * 1 2 3 27 27 H 1.08999 * 109.47047 * 180.02562 * 1 2 3 28 28 H 1.08991 * 109.47328 * 239.99646 * 2 1 3 29 29 H 1.08994 * 109.46833 * 179.97438 * 3 2 1 30 30 H 1.09004 * 109.46701 * 299.99653 * 3 2 1 31 31 H 1.08998 * 109.47344 * 59.99988 * 3 2 1 32 32 H 1.09002 * 109.47152 * 329.68899 * 8 7 6 33 33 H 1.09001 * 109.46980 * 209.68999 * 8 7 6 34 34 H 1.09003 * 109.46359 * 294.18318 * 10 9 8 35 35 H 1.09005 * 109.46019 * 54.14014 * 10 9 8 36 36 H 1.08997 * 109.50678 * 179.11835 * 11 10 9 37 37 H 1.08997 * 109.50578 * 299.23922 * 11 10 9 38 38 H 1.09004 * 109.52120 * 62.25013 * 12 11 10 39 39 H 1.08995 * 109.52086 * 182.37567 * 12 11 10 40 40 H 0.97002 * 120.00477 * 179.97438 * 18 17 15 41 41 H 1.09002 * 109.46292 * 305.85719 * 23 9 8 42 42 H 1.09008 * 109.46217 * 65.82382 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7942 -0.3736 2.4663 6 7 2.3762 -1.2065 3.2555 7 6 3.0132 -2.0976 2.5502 8 6 3.8258 -3.2468 3.0887 9 7 2.9590 -4.4198 3.2637 10 6 2.4725 -4.9126 1.9688 11 6 1.6956 -6.2146 2.1761 12 6 0.5180 -5.9559 3.1200 13 6 1.0481 -5.3979 4.4436 14 1 1.6962 -6.1360 4.9161 15 6 -0.1089 -5.0859 5.3574 16 1 -0.2606 -4.0769 5.7113 17 6 -0.9738 -6.0886 5.7417 18 7 -0.7894 -7.3171 5.3104 19 14 -2.4076 -5.7019 6.8750 20 1 -3.2891 -4.6945 6.2319 21 1 -3.1815 -6.9423 7.1349 22 1 -1.8922 -5.1612 8.1584 23 6 1.8438 -4.1195 4.1706 24 8 2.8079 -1.8073 1.2545 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6768 1.9564 0.8900 32 1 4.2577 -2.9676 4.0498 33 1 4.6249 -3.4869 2.3873 34 1 1.8174 -4.1663 1.5191 35 1 3.3200 -5.0965 1.3085 36 1 1.3213 -6.5718 1.2167 37 1 2.3539 -6.9656 2.6129 38 1 -0.1608 -5.2338 2.6661 39 1 -0.0134 -6.8897 3.3038 40 1 -1.3976 -8.0227 5.5810 41 1 2.2347 -3.7275 5.1095 42 1 1.1915 -3.3770 3.7106 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595617331.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:14 Heat of formation + Delta-G solvation = 23.324403 kcal Electronic energy + Delta-G solvation = -22667.475579 eV Core-core repulsion = 19455.849932 eV Total energy + Delta-G solvation = -3211.625647 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.08329 -38.46638 -36.15300 -35.93651 -34.11183 -32.17857 -30.03966 -29.92391 -27.50709 -26.69509 -25.01415 -24.29235 -23.08255 -21.69184 -21.31171 -20.81376 -18.72387 -17.29696 -17.12508 -16.36885 -15.61370 -15.33336 -14.88420 -14.51141 -14.40048 -14.19889 -13.52283 -13.34463 -12.80402 -12.58512 -12.51958 -12.36104 -12.23241 -12.15526 -11.91430 -11.64255 -11.59381 -11.54384 -11.44581 -10.91414 -10.73988 -10.70802 -10.63515 -10.17339 -9.86820 -9.59546 -9.38754 -9.08576 -8.74595 -8.32700 -8.08497 -5.96598 -4.02230 1.27709 2.33786 2.55620 3.35152 3.38822 3.42864 3.81961 4.26276 4.38165 4.51118 4.61692 4.68272 4.83761 5.11744 5.31581 5.33444 5.34805 5.45746 5.50939 5.52279 5.57445 5.60533 5.69687 5.71388 5.79527 5.90997 5.95353 6.02570 6.14802 6.35931 6.44050 6.60765 6.68303 6.89819 7.11488 7.25789 7.42533 7.59258 7.76881 8.03994 8.14682 8.47366 8.48525 9.01159 9.62123 11.09570 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.018886 B = 0.004925 C = 0.004444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.193670 B = 5683.427852 C = 6298.829084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.006 3.994 3 C -0.144 4.144 4 C 0.152 3.848 5 N -0.282 5.282 6 N -0.277 5.277 7 C 0.138 3.862 8 C 0.145 3.855 9 N -0.514 5.514 10 C 0.057 3.943 11 C -0.117 4.117 12 C -0.112 4.112 13 C 0.056 3.944 14 H 0.036 0.964 15 C -0.514 4.514 16 H 0.054 0.946 17 C 0.064 3.936 18 N -0.890 5.890 19 Si 0.891 3.109 20 H -0.278 1.278 21 H -0.287 1.287 22 H -0.276 1.276 23 C 0.063 3.937 24 O -0.226 6.226 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.061 0.939 28 H 0.098 0.902 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.121 0.879 33 H 0.100 0.900 34 H 0.023 0.977 35 H 0.063 0.937 36 H 0.049 0.951 37 H 0.065 0.935 38 H 0.027 0.973 39 H 0.094 0.906 40 H 0.260 0.740 41 H 0.068 0.932 42 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.697 11.071 -12.820 18.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.014 4.014 3 C -0.201 4.201 4 C -0.059 4.059 5 N -0.129 5.129 6 N -0.124 5.124 7 C -0.076 4.076 8 C 0.014 3.986 9 N -0.237 5.237 10 C -0.071 4.071 11 C -0.155 4.155 12 C -0.150 4.150 13 C 0.037 3.963 14 H 0.055 0.945 15 C -0.553 4.553 16 H 0.072 0.928 17 C -0.137 4.137 18 N -0.529 5.529 19 Si 0.719 3.281 20 H -0.204 1.204 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.063 4.063 24 O -0.105 6.105 25 H 0.090 0.910 26 H 0.093 0.907 27 H 0.080 0.920 28 H 0.116 0.884 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.138 0.862 33 H 0.119 0.881 34 H 0.041 0.959 35 H 0.082 0.918 36 H 0.068 0.932 37 H 0.083 0.917 38 H 0.046 0.954 39 H 0.112 0.888 40 H 0.070 0.930 41 H 0.086 0.914 42 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 7.434 11.123 -11.550 17.675 hybrid contribution -0.903 0.178 -0.771 1.201 sum 6.531 11.301 -12.321 17.949 Atomic orbital electron populations 1.21877 0.91801 1.03243 1.03516 1.19681 0.97032 0.95193 0.89476 1.21855 1.01409 0.93320 1.03546 1.28002 0.93619 0.85951 0.98327 1.74298 1.18888 1.21333 0.98392 1.74453 1.09160 1.02046 1.26778 1.29846 1.00658 1.00300 0.76756 1.21359 0.94037 0.81590 1.01636 1.62499 1.22787 1.25730 1.12638 1.22174 0.97766 0.97612 0.89512 1.21683 0.98788 0.95440 0.99543 1.21684 0.95109 1.03049 0.95176 1.18676 0.93728 0.90874 0.93025 0.94545 1.21093 1.10837 0.94903 1.28419 0.92790 1.24909 0.97685 0.94992 0.96122 1.69869 1.37834 1.00381 1.44779 0.86679 0.82534 0.77504 0.81429 1.20401 1.21296 1.20176 1.22473 0.89622 1.00163 0.94058 1.84819 1.54519 1.39504 1.31675 0.90971 0.90705 0.91958 0.88400 0.92265 0.90723 0.91026 0.86156 0.88140 0.95887 0.91808 0.93249 0.91672 0.95386 0.88800 0.93002 0.91350 0.95620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.18 37.16 0.34 -1.06 16 2 C 0.01 0.06 3.39 -91.77 -0.31 -0.25 16 3 C -0.14 -1.16 9.18 37.16 0.34 -0.82 16 4 C 0.15 2.25 6.99 -12.94 -0.09 2.16 16 5 N -0.28 -4.98 12.22 32.55 0.40 -4.58 16 6 N -0.28 -5.22 11.56 32.55 0.38 -4.85 16 7 C 0.14 2.28 5.79 -12.94 -0.07 2.21 16 8 C 0.14 2.11 6.00 -4.98 -0.03 2.08 16 9 N -0.51 -9.27 4.86 -236.11 -1.15 -10.41 16 10 C 0.06 0.99 5.14 -3.84 -0.02 0.97 16 11 C -0.12 -2.25 6.09 -26.65 -0.16 -2.41 16 12 C -0.11 -2.68 5.02 -26.61 -0.13 -2.81 16 13 C 0.06 1.41 2.26 -91.70 -0.21 1.20 16 14 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 15 C -0.51 -14.43 8.57 -34.44 -0.30 -14.72 16 16 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 17 C 0.06 1.80 5.30 -17.82 -0.09 1.70 16 18 N -0.89 -25.50 11.35 55.43 0.63 -24.87 16 19 Si 0.89 21.74 29.54 -169.99 -5.02 16.71 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 C 0.06 1.38 4.15 -3.84 -0.02 1.37 16 24 O -0.23 -3.54 10.47 5.39 0.06 -3.48 16 25 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.12 1.59 8.14 -51.93 -0.42 1.17 16 33 H 0.10 1.15 8.06 -51.93 -0.42 0.73 16 34 H 0.02 0.43 7.15 -51.93 -0.37 0.06 16 35 H 0.06 0.94 8.06 -51.93 -0.42 0.52 16 36 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 38 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.09 2.49 6.15 -51.93 -0.32 2.17 16 40 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 41 H 0.07 1.50 8.12 -51.93 -0.42 1.08 16 42 H 0.03 0.61 6.85 -51.92 -0.36 0.25 16 LS Contribution 336.53 15.07 5.07 5.07 Total: -1.00 -31.29 336.53 -7.31 -38.60 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -6.92 Total: -1.81 kcal Atomic # 6 Polarization: -9.63 SS G_CDS: -0.75 Total: -10.39 kcal Atomic # 7 Polarization: -44.96 SS G_CDS: 0.26 Total: -44.71 kcal Atomic # 8 Polarization: -3.54 SS G_CDS: 0.06 Total: -3.48 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.29 -7.31 -38.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595617331.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.925 kcal (2) G-P(sol) polarization free energy of solvation -31.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds