Wall clock time and date at job start Tue Mar 31 2020 01:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 109.47083 * 2 1 4 4 C 1.53004 * 109.47021 * 239.99761 * 2 1 3 5 5 C 1.50701 * 109.47044 * 119.99880 * 2 1 3 6 6 N 1.31049 * 126.46283 * 60.00073 * 5 2 1 7 7 C 1.35018 * 105.59026 * 180.02562 * 6 5 2 8 8 N 1.38844 * 126.38477 * 179.97438 * 7 6 5 9 9 C 1.46843 * 110.99987 * 304.21128 * 8 7 6 10 10 C 1.53042 * 109.52278 * 174.15858 * 9 8 7 11 11 C 1.53127 * 109.27596 * 59.17923 * 10 9 8 12 12 C 1.53123 * 109.15019 * 302.34079 * 11 10 9 13 13 H 1.08997 * 109.51083 * 297.71779 * 12 11 10 14 14 C 1.50704 * 109.49150 * 177.60758 * 12 11 10 15 15 H 1.08003 * 120.00124 * 0.19963 * 14 12 11 16 16 C 1.37870 * 120.00192 * 180.20396 * 14 12 11 17 17 N 1.31518 * 119.99753 * 359.97438 * 16 14 12 18 18 Si 1.86796 * 120.00381 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47200 * 89.99750 * 18 16 14 20 20 H 1.48501 * 109.47062 * 210.00028 * 18 16 14 21 21 H 1.48501 * 109.46964 * 329.99359 * 18 16 14 22 22 C 1.46847 * 110.99841 * 179.97438 * 8 7 6 23 23 N 1.30629 * 107.22475 * 0.26122 * 7 6 5 24 24 O 1.21291 * 110.12779 * 359.54489 * 23 7 6 25 25 H 1.08998 * 109.47028 * 299.99778 * 1 2 3 26 26 H 1.08993 * 109.47178 * 60.00126 * 1 2 3 27 27 H 1.09004 * 109.46903 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47199 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.47006 * 300.00011 * 3 2 1 30 30 H 1.08995 * 109.47241 * 59.99736 * 3 2 1 31 31 H 1.09004 * 109.47219 * 299.99730 * 4 2 1 32 32 H 1.08993 * 109.47052 * 60.00036 * 4 2 1 33 33 H 1.09003 * 109.47119 * 180.02562 * 4 2 1 34 34 H 1.08993 * 109.46313 * 294.17513 * 9 8 7 35 35 H 1.09004 * 109.46429 * 54.14863 * 9 8 7 36 36 H 1.08997 * 109.50758 * 179.11703 * 10 9 8 37 37 H 1.08999 * 109.50480 * 299.24136 * 10 9 8 38 38 H 1.09003 * 109.52393 * 62.24889 * 11 10 9 39 39 H 1.08998 * 109.52208 * 182.44010 * 11 10 9 40 40 H 0.96996 * 120.00411 * 180.02562 * 17 16 14 41 41 H 1.09002 * 109.46481 * 305.85875 * 22 8 7 42 42 H 1.08994 * 109.46283 * 65.83729 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0323 -0.7104 1.2305 6 7 1.7951 -1.9558 1.5622 7 6 2.4419 -2.1495 2.7314 8 7 2.4766 -3.3256 3.4685 9 6 1.1195 -3.7874 3.7867 10 6 1.1916 -5.1550 4.4699 11 6 2.0241 -5.0375 5.7497 12 6 3.4170 -4.5087 5.3961 13 1 3.9190 -5.2174 4.7374 14 6 4.2237 -4.3344 6.6570 15 1 3.7886 -4.5792 7.6147 16 6 5.5172 -3.8622 6.5881 17 7 6.0473 -3.5644 5.4219 18 14 6.5174 -3.6467 8.1509 19 1 7.2550 -4.9019 8.4436 20 1 7.4849 -2.5347 7.9701 21 1 5.6075 -3.3321 9.2815 22 6 3.2808 -3.1600 4.6860 23 7 3.0238 -1.0222 3.0429 24 8 2.8033 -0.1889 2.1896 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4424 -0.0005 29 1 1.6766 1.9562 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 1.6767 -1.7490 -1.2492 32 1 1.6767 -0.2075 -2.1392 33 1 3.1300 -0.7217 -1.2490 34 1 0.6399 -3.0724 4.4551 35 1 0.5393 -3.8708 2.8676 36 1 0.1852 -5.4905 4.7200 37 1 1.6587 -5.8739 3.7967 38 1 1.5369 -4.3480 6.4392 39 1 2.1145 -6.0181 6.2168 40 1 6.9574 -3.2326 5.3732 41 1 4.2701 -2.7877 4.4200 42 1 2.7914 -2.4480 5.3505 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596331062.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:45 Heat of formation + Delta-G solvation = 58.001969 kcal Electronic energy + Delta-G solvation = -22650.549926 eV Core-core repulsion = 19440.428012 eV Total energy + Delta-G solvation = -3210.121915 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.99137 -38.58447 -37.43832 -35.18121 -33.20059 -32.29587 -30.38564 -29.58167 -27.54846 -27.51380 -25.18656 -24.32060 -23.85088 -22.01523 -21.43546 -19.73638 -18.68701 -17.57175 -17.31969 -16.28353 -15.53726 -15.35983 -14.48740 -14.32383 -14.19775 -14.05684 -13.72432 -13.29779 -12.74936 -12.60799 -12.57895 -12.42436 -12.07324 -11.91717 -11.89240 -11.69611 -11.46429 -11.16903 -11.08307 -10.99244 -10.85397 -10.56291 -10.51738 -10.25140 -10.19892 -9.87190 -9.53905 -9.09749 -8.97134 -8.40639 -7.85214 -6.02964 -4.10930 1.62212 2.73363 3.10285 3.29714 3.36943 3.39680 3.61677 4.29798 4.41717 4.62979 4.68167 4.83264 5.14617 5.32465 5.36747 5.39841 5.44874 5.53502 5.54982 5.60343 5.62085 5.63787 5.78110 5.82221 5.94335 6.04576 6.05620 6.10024 6.29055 6.33368 6.42264 6.59426 6.61292 6.82431 6.94284 7.00140 7.37994 7.63410 7.75831 7.89842 8.04672 8.37646 8.81272 8.93897 9.55069 11.03012 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.023190 B = 0.004722 C = 0.004126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.143612 B = 5927.676831 C = 6783.834195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.033 3.967 3 C -0.149 4.149 4 C -0.140 4.140 5 C 0.176 3.824 6 N -0.484 5.484 7 C 0.360 3.640 8 N -0.439 5.439 9 C 0.071 3.929 10 C -0.115 4.115 11 C -0.115 4.115 12 C 0.054 3.946 13 H 0.038 0.962 14 C -0.518 4.518 15 H 0.059 0.941 16 C 0.063 3.937 17 N -0.885 5.885 18 Si 0.894 3.106 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.274 1.274 22 C 0.067 3.933 23 N -0.410 5.410 24 O 0.068 5.932 25 H 0.059 0.941 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.034 0.966 35 H 0.075 0.925 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.047 0.953 39 H 0.055 0.945 40 H 0.263 0.737 41 H 0.118 0.882 42 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.068 7.366 -12.110 17.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.031 3.969 3 C -0.206 4.206 4 C -0.198 4.198 5 C -0.046 4.046 6 N -0.221 5.221 7 C -0.001 4.001 8 N -0.165 5.165 9 C -0.056 4.056 10 C -0.153 4.153 11 C -0.153 4.153 12 C 0.035 3.965 13 H 0.056 0.944 14 C -0.557 4.557 15 H 0.078 0.922 16 C -0.139 4.139 17 N -0.523 5.523 18 Si 0.721 3.279 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.058 4.058 23 N -0.128 5.128 24 O 0.016 5.984 25 H 0.078 0.922 26 H 0.091 0.909 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.052 0.948 35 H 0.094 0.906 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.135 0.865 42 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -10.366 6.772 -11.762 17.078 hybrid contribution 0.430 0.703 1.181 1.440 sum -9.936 7.475 -10.581 16.327 Atomic orbital electron populations 1.21895 0.91625 1.03513 1.02627 1.19126 0.96505 0.94588 0.86680 1.21942 1.02292 0.93291 1.03114 1.21905 1.01782 1.01236 0.94841 1.28486 0.92227 0.89132 0.94775 1.71725 1.24566 1.14040 1.11740 1.24091 0.93953 0.90476 0.91579 1.58922 1.14374 1.19110 1.24068 1.22089 0.86877 0.97145 0.99518 1.21648 0.99769 0.95479 0.98432 1.21740 0.97890 1.00577 0.95074 1.18728 0.90742 0.91648 0.95394 0.94428 1.21123 0.97517 1.44338 0.92689 0.92244 1.25032 0.97717 0.95058 0.96129 1.69855 1.15013 1.44107 1.23366 0.86565 0.80019 0.77801 0.83489 1.20556 1.21178 1.19877 1.22731 0.97599 1.01000 0.84430 1.75146 1.27163 0.99696 1.10798 1.85266 1.51813 1.36056 1.25236 0.92151 0.90879 0.91143 0.91436 0.90875 0.91551 0.91083 0.90918 0.91980 0.94798 0.90613 0.92165 0.91284 0.93422 0.92626 0.92745 0.86456 0.95863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 8.46 37.16 0.31 -0.89 16 2 C 0.03 0.35 0.99 -155.66 -0.15 0.19 16 3 C -0.15 -1.24 8.06 37.15 0.30 -0.94 16 4 C -0.14 -1.29 8.46 37.16 0.31 -0.98 16 5 C 0.18 2.75 6.59 -12.99 -0.09 2.67 16 6 N -0.48 -8.95 11.30 -12.68 -0.14 -9.10 16 7 C 0.36 7.81 7.37 -321.19 -2.37 5.44 16 8 N -0.44 -9.91 4.72 -176.68 -0.83 -10.74 16 9 C 0.07 1.34 5.39 -3.83 -0.02 1.32 16 10 C -0.12 -2.06 6.09 -26.64 -0.16 -2.23 16 11 C -0.12 -2.41 5.23 -26.60 -0.14 -2.55 16 12 C 0.05 1.38 2.26 -91.69 -0.21 1.17 16 13 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 14 C -0.52 -14.34 8.56 -34.44 -0.29 -14.63 16 15 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 16 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 17 N -0.89 -25.95 11.33 55.43 0.63 -25.32 16 18 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 22 C 0.07 1.71 3.93 -3.84 -0.02 1.70 16 23 N -0.41 -9.04 11.21 28.63 0.32 -8.72 16 24 O 0.07 1.24 10.75 18.10 0.19 1.44 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 1.32 7.89 -51.93 -0.41 0.91 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 38 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 41 H 0.12 3.40 5.88 -51.93 -0.31 3.09 16 42 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 336.97 15.07 5.08 5.08 Total: -1.00 -31.23 336.97 -9.41 -40.64 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -7.02 Total: -1.73 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: -2.61 Total: -8.07 kcal Atomic # 7 Polarization: -53.85 SS G_CDS: -0.03 Total: -53.88 kcal Atomic # 8 Polarization: 1.24 SS G_CDS: 0.19 Total: 1.44 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.23 -9.41 -40.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596331062.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.642 kcal (2) G-P(sol) polarization free energy of solvation -31.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds