Wall clock time and date at job start Tue Mar 31 2020 01:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 109.47083 * 2 1 4 4 C 1.53004 * 109.47021 * 239.99761 * 2 1 3 5 5 C 1.50701 * 109.47044 * 119.99880 * 2 1 3 6 6 N 1.31049 * 126.46283 * 60.00073 * 5 2 1 7 7 C 1.35018 * 105.59026 * 180.02562 * 6 5 2 8 8 N 1.38844 * 126.38477 * 179.97438 * 7 6 5 9 9 C 1.46843 * 110.99987 * 304.21128 * 8 7 6 10 10 C 1.53042 * 109.52278 * 174.15858 * 9 8 7 11 11 C 1.53127 * 109.27596 * 59.17923 * 10 9 8 12 12 C 1.53123 * 109.15019 * 302.34079 * 11 10 9 13 13 H 1.08997 * 109.51083 * 297.71779 * 12 11 10 14 14 C 1.50704 * 109.49150 * 177.60758 * 12 11 10 15 15 H 1.08003 * 120.00124 * 0.19963 * 14 12 11 16 16 C 1.37870 * 120.00192 * 180.20396 * 14 12 11 17 17 N 1.31518 * 119.99753 * 359.97438 * 16 14 12 18 18 Si 1.86796 * 120.00381 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47200 * 89.99750 * 18 16 14 20 20 H 1.48501 * 109.47062 * 210.00028 * 18 16 14 21 21 H 1.48501 * 109.46964 * 329.99359 * 18 16 14 22 22 C 1.46847 * 110.99841 * 179.97438 * 8 7 6 23 23 N 1.30629 * 107.22475 * 0.26122 * 7 6 5 24 24 O 1.21291 * 110.12779 * 359.54489 * 23 7 6 25 25 H 1.08998 * 109.47028 * 299.99778 * 1 2 3 26 26 H 1.08993 * 109.47178 * 60.00126 * 1 2 3 27 27 H 1.09004 * 109.46903 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47199 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.47006 * 300.00011 * 3 2 1 30 30 H 1.08995 * 109.47241 * 59.99736 * 3 2 1 31 31 H 1.09004 * 109.47219 * 299.99730 * 4 2 1 32 32 H 1.08993 * 109.47052 * 60.00036 * 4 2 1 33 33 H 1.09003 * 109.47119 * 180.02562 * 4 2 1 34 34 H 1.08993 * 109.46313 * 294.17513 * 9 8 7 35 35 H 1.09004 * 109.46429 * 54.14863 * 9 8 7 36 36 H 1.08997 * 109.50758 * 179.11703 * 10 9 8 37 37 H 1.08999 * 109.50480 * 299.24136 * 10 9 8 38 38 H 1.09003 * 109.52393 * 62.24889 * 11 10 9 39 39 H 1.08998 * 109.52208 * 182.44010 * 11 10 9 40 40 H 0.96996 * 120.00411 * 180.02562 * 17 16 14 41 41 H 1.09002 * 109.46481 * 305.85875 * 22 8 7 42 42 H 1.08994 * 109.46283 * 65.83729 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0323 -0.7104 1.2305 6 7 1.7951 -1.9558 1.5622 7 6 2.4419 -2.1495 2.7314 8 7 2.4766 -3.3256 3.4685 9 6 1.1195 -3.7874 3.7867 10 6 1.1916 -5.1550 4.4699 11 6 2.0241 -5.0375 5.7497 12 6 3.4170 -4.5087 5.3961 13 1 3.9190 -5.2174 4.7374 14 6 4.2237 -4.3344 6.6570 15 1 3.7886 -4.5792 7.6147 16 6 5.5172 -3.8622 6.5881 17 7 6.0473 -3.5644 5.4219 18 14 6.5174 -3.6467 8.1509 19 1 7.2550 -4.9019 8.4436 20 1 7.4849 -2.5347 7.9701 21 1 5.6075 -3.3321 9.2815 22 6 3.2808 -3.1600 4.6860 23 7 3.0238 -1.0222 3.0429 24 8 2.8033 -0.1889 2.1896 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4424 -0.0005 29 1 1.6766 1.9562 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 1.6767 -1.7490 -1.2492 32 1 1.6767 -0.2075 -2.1392 33 1 3.1300 -0.7217 -1.2490 34 1 0.6399 -3.0724 4.4551 35 1 0.5393 -3.8708 2.8676 36 1 0.1852 -5.4905 4.7200 37 1 1.6587 -5.8739 3.7967 38 1 1.5369 -4.3480 6.4392 39 1 2.1145 -6.0181 6.2168 40 1 6.9574 -3.2326 5.3732 41 1 4.2701 -2.7877 4.4200 42 1 2.7914 -2.4480 5.3505 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596331062.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:43 Heat of formation + Delta-G solvation = 38.681106 kcal Electronic energy + Delta-G solvation = -22651.387742 eV Core-core repulsion = 19440.428012 eV Total energy + Delta-G solvation = -3210.959730 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -46.52804 -40.31577 -38.35685 -36.78503 -35.09557 -33.92710 -32.05026 -31.39129 -28.26371 -28.22406 -27.18649 -25.99915 -25.29653 -23.48753 -23.17823 -21.07850 -20.38192 -19.10608 -18.89997 -18.13905 -17.23700 -16.56620 -16.44249 -15.69558 -15.52418 -15.09426 -14.96288 -14.95272 -14.54078 -14.29175 -13.69573 -13.58941 -13.33514 -12.98547 -12.92199 -12.82879 -12.68230 -12.66620 -12.60862 -12.36544 -12.29991 -12.13012 -11.96424 -11.91441 -11.86446 -11.55884 -11.17176 -11.00159 -10.92659 -10.53555 -9.58585 -8.17098 -6.33371 0.23365 1.18635 1.37764 1.38917 1.49413 1.90699 2.05825 2.38702 2.99258 3.11126 3.55261 3.86408 3.86805 3.91573 3.99453 4.04806 4.20794 4.37009 4.41644 4.63341 4.69064 4.74559 4.76321 4.77223 4.84810 4.89540 4.95874 4.96142 4.96727 5.04714 5.13388 5.15917 5.21229 5.25824 5.34764 5.40393 5.52168 5.64764 5.81005 5.97079 6.01546 6.28232 6.79103 7.32926 7.36926 8.87645 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.023190 B = 0.004722 C = 0.004126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.143612 B = 5927.676831 C = 6783.834195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.031 3.969 3 C -0.147 4.147 4 C -0.137 4.137 5 C 0.194 3.806 6 N -0.495 5.495 7 C 0.340 3.660 8 N -0.453 5.453 9 C 0.071 3.929 10 C -0.106 4.106 11 C -0.109 4.109 12 C 0.050 3.950 13 H 0.003 0.997 14 C -0.537 4.537 15 H 0.063 0.937 16 C 0.011 3.989 17 N -0.918 5.918 18 Si 0.959 3.041 19 H -0.270 1.270 20 H -0.287 1.287 21 H -0.265 1.265 22 C 0.092 3.908 23 N -0.447 5.447 24 O 0.069 5.931 25 H 0.056 0.944 26 H 0.110 0.890 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.109 0.891 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.111 0.889 33 H 0.051 0.949 34 H 0.033 0.967 35 H 0.095 0.905 36 H 0.104 0.896 37 H 0.066 0.934 38 H 0.048 0.952 39 H 0.065 0.935 40 H 0.261 0.739 41 H 0.077 0.923 42 H 0.004 0.996 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.928 8.057 -13.124 20.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.028 3.972 3 C -0.205 4.205 4 C -0.195 4.195 5 C -0.027 4.027 6 N -0.231 5.231 7 C -0.020 4.020 8 N -0.178 5.178 9 C -0.056 4.056 10 C -0.144 4.144 11 C -0.147 4.147 12 C 0.031 3.969 13 H 0.022 0.978 14 C -0.575 4.575 15 H 0.081 0.919 16 C -0.188 4.188 17 N -0.557 5.557 18 Si 0.784 3.216 19 H -0.196 1.196 20 H -0.212 1.212 21 H -0.189 1.189 22 C -0.035 4.035 23 N -0.167 5.167 24 O 0.017 5.983 25 H 0.075 0.925 26 H 0.128 0.872 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.128 0.872 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.130 0.870 33 H 0.070 0.930 34 H 0.052 0.948 35 H 0.113 0.887 36 H 0.122 0.878 37 H 0.085 0.915 38 H 0.067 0.933 39 H 0.083 0.917 40 H 0.070 0.930 41 H 0.096 0.904 42 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges -12.256 7.447 -12.787 19.214 hybrid contribution 0.970 0.560 1.365 1.766 sum -11.286 8.006 -11.422 17.943 Atomic orbital electron populations 1.21924 0.89766 1.03259 1.04320 1.19655 0.97790 0.95362 0.84365 1.21989 1.01822 0.91870 1.04779 1.21940 1.01179 1.00816 0.95582 1.29804 0.89634 0.88422 0.94862 1.71728 1.25141 1.15484 1.10723 1.24251 0.94848 0.90375 0.92559 1.58864 1.16137 1.20041 1.22767 1.22242 0.85185 0.97562 1.00562 1.21631 1.01499 0.94761 0.96462 1.21632 0.95495 1.00687 0.96851 1.18691 0.93154 0.91008 0.94068 0.97843 1.21529 0.98204 1.44155 0.93620 0.91912 1.25876 0.98976 0.94734 0.99186 1.70030 1.15131 1.44941 1.25555 0.85532 0.78431 0.77860 0.79756 1.19578 1.21239 1.18889 1.22163 0.95964 1.00100 0.85236 1.75122 1.28235 1.00561 1.12770 1.85208 1.52353 1.35283 1.25451 0.92508 0.87155 0.92380 0.92301 0.87246 0.91889 0.92522 0.87033 0.93016 0.94828 0.88713 0.87779 0.91501 0.93285 0.91653 0.92999 0.90433 0.97784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.95 8.46 71.98 0.61 -1.34 16 2 C 0.03 0.57 0.99 -52.93 -0.05 0.52 16 3 C -0.15 -2.06 8.06 71.98 0.58 -1.48 16 4 C -0.14 -2.21 8.46 71.98 0.61 -1.60 16 5 C 0.19 6.01 6.59 88.36 0.58 6.59 16 6 N -0.49 -18.39 11.30 -311.44 -3.52 -21.91 16 7 C 0.34 15.21 7.37 260.92 1.92 17.13 16 8 N -0.45 -21.02 4.72 -715.69 -3.38 -24.40 16 9 C 0.07 2.64 5.39 86.33 0.47 3.10 16 10 C -0.11 -3.62 6.09 30.65 0.19 -3.43 16 11 C -0.11 -4.52 5.23 30.68 0.16 -4.36 16 12 C 0.05 2.63 2.26 -11.49 -0.03 2.61 16 13 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 14 C -0.54 -30.44 8.56 25.60 0.22 -30.22 16 15 H 0.06 3.42 7.74 -2.91 -0.02 3.40 16 16 C 0.01 0.65 5.30 84.65 0.45 1.10 16 17 N -0.92 -56.04 11.33 21.45 0.24 -55.80 16 18 Si 0.96 44.95 29.54 68.60 2.03 46.97 16 19 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 20 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 21 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 22 C 0.09 4.90 3.93 86.32 0.34 5.24 16 23 N -0.45 -20.56 11.21 -66.70 -0.75 -21.30 16 24 O 0.07 2.58 10.75 74.82 0.80 3.38 16 25 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.06 1.00 8.14 -2.38 -0.02 0.99 16 28 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 32 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.09 3.18 7.89 -2.38 -0.02 3.16 16 36 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 37 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 38 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 40 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 41 H 0.08 4.77 5.88 -2.39 -0.01 4.76 16 42 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 Total: -1.00 -71.93 336.97 2.45 -69.48 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: 0.98 Total: 9.73 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: 6.05 Total: -6.16 kcal Atomic # 7 Polarization: -116.00 SS G_CDS: -7.41 Total: -123.41 kcal Atomic # 8 Polarization: 2.58 SS G_CDS: 0.80 Total: 3.38 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.97 kcal Total: -71.93 2.45 -69.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596331062.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.157 kcal (2) G-P(sol) polarization free energy of solvation -71.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds