Wall clock time and date at job start Tue Mar 31 2020 00:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47186 * 2 1 4 4 C 1.50695 * 109.47323 * 120.00824 * 2 1 3 5 5 N 1.30505 * 125.64712 * 300.03539 * 4 2 1 6 6 C 1.34128 * 109.25616 * 179.97438 * 5 4 2 7 7 C 1.34668 * 108.01756 * 359.73613 * 6 5 4 8 8 N 1.35043 * 125.65197 * 119.99738 * 4 2 1 9 9 C 1.46491 * 126.40037 * 0.03352 * 8 4 2 10 10 C 1.50702 * 109.46957 * 84.99948 * 9 8 4 11 11 O 1.21283 * 120.00262 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99928 * 179.72354 * 10 9 8 13 13 C 1.46499 * 120.00199 * 180.27479 * 12 10 9 14 14 C 1.52997 * 109.47555 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.47273 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.46983 * 180.02562 * 15 14 13 17 17 H 1.07998 * 120.00145 * 0.02562 * 16 15 14 18 18 C 1.37878 * 120.00161 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99703 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00027 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47602 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47022 * 120.00397 * 20 18 16 23 23 H 1.48509 * 109.47173 * 239.99962 * 20 18 16 24 24 H 1.08996 * 109.46982 * 299.99798 * 1 2 3 25 25 H 1.09004 * 109.47065 * 59.99585 * 1 2 3 26 26 H 1.08994 * 109.47308 * 179.97438 * 1 2 3 27 27 H 1.09011 * 109.46648 * 240.00608 * 2 1 3 28 28 H 1.08996 * 109.46777 * 60.00717 * 3 2 1 29 29 H 1.09000 * 109.46926 * 180.02562 * 3 2 1 30 30 H 1.08995 * 109.47419 * 300.00000 * 3 2 1 31 31 H 1.07998 * 125.98360 * 180.02562 * 6 5 4 32 32 H 1.08005 * 126.58899 * 180.28116 * 7 6 5 33 33 H 1.09004 * 109.47166 * 325.00214 * 9 8 4 34 34 H 1.08994 * 109.47507 * 204.99920 * 9 8 4 35 35 H 0.97000 * 120.00317 * 0.28382 * 12 10 9 36 36 H 1.08998 * 109.47134 * 300.00670 * 13 12 10 37 37 H 1.09002 * 109.46857 * 59.99862 * 13 12 10 38 38 H 1.08998 * 109.47382 * 300.00439 * 14 13 12 39 39 H 1.09005 * 109.46800 * 60.00640 * 14 13 12 40 40 H 1.08992 * 109.47143 * 300.00104 * 15 14 13 41 41 H 1.08997 * 109.46799 * 60.00311 * 15 14 13 42 42 H 0.97003 * 120.00173 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7106 1.2303 5 7 1.7855 -0.3626 2.4637 6 6 2.3926 -1.2219 3.2956 7 6 3.0354 -2.1403 2.5495 8 7 2.8120 -1.8132 1.2393 9 6 3.3190 -2.5289 0.0660 10 6 4.5913 -1.8761 -0.4096 11 8 5.0315 -0.9086 0.1743 12 7 5.2433 -2.3712 -1.4803 13 6 6.4834 -1.7403 -1.9390 14 6 7.0156 -2.4908 -3.1614 15 6 8.3103 -1.8315 -3.6409 16 6 8.8341 -2.5704 -4.8453 17 1 8.2971 -3.4245 -5.2306 18 6 9.9991 -2.1560 -5.4555 19 7 10.6533 -1.1162 -4.9860 20 14 10.6479 -3.0714 -6.9489 21 1 9.7346 -4.1956 -7.2759 22 1 10.7225 -2.1424 -8.1051 23 1 12.0026 -3.6035 -6.6533 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.6768 1.9562 0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8899 31 1 2.3662 -1.1862 4.3747 32 1 3.6174 -2.9736 2.9148 33 1 2.5744 -2.4960 -0.7295 34 1 3.5205 -3.5664 0.3323 35 1 4.8914 -3.1452 -1.9472 36 1 6.2853 -0.7028 -2.2079 37 1 7.2248 -1.7735 -1.1406 38 1 7.2136 -3.5285 -2.8930 39 1 6.2740 -2.4571 -3.9597 40 1 8.1119 -0.7940 -3.9095 41 1 9.0520 -1.8648 -2.8428 42 1 11.4731 -0.8249 -5.4150 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602095105.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:37 Heat of formation + Delta-G solvation = -22.132678 kcal Electronic energy + Delta-G solvation = -21282.318781 eV Core-core repulsion = 18068.721967 eV Total energy + Delta-G solvation = -3213.596814 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -43.15392 -40.67432 -37.05533 -36.28512 -35.24205 -34.99150 -33.08458 -29.97224 -29.45275 -28.05696 -27.86300 -24.96115 -23.80491 -22.39057 -22.35413 -21.65437 -20.07241 -18.67603 -18.37256 -18.23306 -16.97673 -16.71080 -16.38213 -16.03193 -15.89668 -15.46984 -15.23431 -14.72171 -14.57040 -14.30334 -14.24761 -13.81490 -13.77245 -13.74076 -13.22866 -13.02178 -12.78452 -12.56591 -12.41385 -12.36083 -12.14130 -11.90716 -11.69594 -11.69365 -11.36702 -11.19055 -10.92540 -10.57437 -10.45894 -10.19162 -9.27168 -8.20742 -6.32304 0.98496 1.41517 1.41923 1.44062 1.54785 1.69343 2.20160 2.25631 2.42021 3.13563 3.40813 3.60405 3.72157 3.79620 4.07092 4.12182 4.15042 4.18961 4.19460 4.34980 4.52742 4.59557 4.72975 4.78257 4.88708 4.92081 4.94787 4.94932 5.05008 5.16141 5.26289 5.31798 5.36165 5.41858 5.51427 5.69257 5.83363 5.86479 6.16506 6.20980 6.48647 6.86169 7.13530 7.17343 7.37865 8.91583 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.032080 B = 0.002763 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.609654 B =10131.501213 C =10409.369269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.011 4.011 3 C -0.135 4.135 4 C 0.213 3.787 5 N -0.523 5.523 6 C -0.056 4.056 7 C -0.051 4.051 8 N -0.446 5.446 9 C 0.087 3.913 10 C 0.489 3.511 11 O -0.578 6.578 12 N -0.705 5.705 13 C 0.132 3.868 14 C -0.101 4.101 15 C 0.022 3.978 16 C -0.539 4.539 17 H 0.069 0.931 18 C -0.005 4.005 19 N -0.936 5.936 20 Si 0.967 3.033 21 H -0.256 1.256 22 H -0.281 1.281 23 H -0.281 1.281 24 H 0.052 0.948 25 H 0.082 0.918 26 H 0.061 0.939 27 H 0.091 0.909 28 H 0.054 0.946 29 H 0.029 0.971 30 H 0.083 0.917 31 H 0.183 0.817 32 H 0.201 0.799 33 H 0.156 0.844 34 H 0.164 0.836 35 H 0.421 0.579 36 H 0.047 0.953 37 H 0.046 0.954 38 H 0.071 0.929 39 H 0.072 0.928 40 H -0.010 1.010 41 H -0.011 1.011 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.370 -6.296 9.285 24.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.031 4.031 3 C -0.193 4.193 4 C -0.050 4.050 5 N -0.242 5.242 6 C -0.203 4.203 7 C -0.183 4.183 8 N -0.128 5.128 9 C -0.039 4.039 10 C 0.274 3.726 11 O -0.457 6.457 12 N -0.358 5.358 13 C 0.007 3.993 14 C -0.138 4.138 15 C -0.016 4.016 16 C -0.577 4.577 17 H 0.087 0.913 18 C -0.202 4.202 19 N -0.577 5.577 20 Si 0.791 3.209 21 H -0.180 1.180 22 H -0.207 1.207 23 H -0.207 1.207 24 H 0.072 0.928 25 H 0.101 0.899 26 H 0.080 0.920 27 H 0.109 0.891 28 H 0.074 0.926 29 H 0.048 0.952 30 H 0.102 0.898 31 H 0.200 0.800 32 H 0.218 0.782 33 H 0.173 0.827 34 H 0.182 0.818 35 H 0.259 0.741 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.009 0.991 41 H 0.008 0.992 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -21.326 -4.938 9.815 23.990 hybrid contribution 1.592 -0.841 -0.795 1.968 sum -19.734 -5.778 9.020 22.454 Atomic orbital electron populations 1.21723 0.91519 1.02604 1.02989 1.19674 0.97631 0.95289 0.90480 1.21706 0.99702 0.95004 1.02877 1.23559 0.96684 0.88876 0.95901 1.70116 1.25977 1.27992 1.00079 1.22649 1.02357 0.94788 1.00491 1.23140 1.07356 1.05289 0.82502 1.45039 1.37967 1.23091 1.06734 1.22001 0.94288 0.98477 0.89119 1.21412 0.86643 0.84138 0.80357 1.90793 1.68757 1.28891 1.57245 1.45843 1.25240 1.34080 1.30612 1.21207 0.85113 0.96583 0.96366 1.21590 0.97595 0.99378 0.95277 1.18955 0.92657 0.95013 0.94967 1.21721 1.08271 1.14341 1.13340 0.91292 1.26038 0.97341 0.95968 1.00881 1.70122 1.17808 1.27125 1.42637 0.85371 0.78244 0.78728 0.78524 1.17954 1.20704 1.20729 0.92834 0.89872 0.91998 0.89098 0.92642 0.95208 0.89820 0.80018 0.78179 0.82694 0.81806 0.74074 0.93454 0.93577 0.91041 0.90949 0.99140 0.99215 0.92858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.01 9.18 71.98 0.66 -1.35 16 2 C -0.01 -0.21 3.25 -11.54 -0.04 -0.25 16 3 C -0.13 -3.06 9.18 71.98 0.66 -2.40 16 4 C 0.21 5.28 6.40 138.13 0.88 6.17 16 5 N -0.52 -14.98 11.25 -188.14 -2.12 -17.10 16 6 C -0.06 -1.38 11.87 83.52 0.99 -0.39 16 7 C -0.05 -1.05 11.58 83.09 0.96 -0.09 16 8 N -0.45 -9.40 2.24 -518.36 -1.16 -10.56 16 9 C 0.09 1.17 6.17 85.64 0.53 1.70 16 10 C 0.49 11.54 7.90 87.66 0.69 12.23 16 11 O -0.58 -20.67 16.42 -3.04 -0.05 -20.72 16 12 N -0.70 -15.32 5.56 -463.06 -2.57 -17.90 16 13 C 0.13 4.22 5.67 86.38 0.49 4.71 16 14 C -0.10 -3.54 5.27 30.59 0.16 -3.38 16 15 C 0.02 1.09 4.97 29.85 0.15 1.24 16 16 C -0.54 -29.14 9.11 25.60 0.23 -28.91 16 17 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 18 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 19 N -0.94 -56.55 13.29 21.45 0.28 -56.27 16 20 Si 0.97 42.82 29.54 68.60 2.03 44.85 16 21 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 22 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 23 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 24 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 26 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.09 1.49 6.85 -2.38 -0.02 1.47 16 28 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.18 3.52 8.06 -2.91 -0.02 3.50 16 32 H 0.20 2.71 8.06 -2.91 -0.02 2.69 16 33 H 0.16 1.04 7.28 -2.38 -0.02 1.02 16 34 H 0.16 0.90 8.13 -2.39 -0.02 0.88 16 35 H 0.42 5.61 8.47 -92.71 -0.79 4.83 16 36 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 40 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 41 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 42 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 Total: -1.00 -79.58 356.22 3.45 -76.13 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: 0.21 Total: 12.09 kcal Atomic # 6 Polarization: -17.35 SS G_CDS: 6.84 Total: -10.52 kcal Atomic # 7 Polarization: -96.26 SS G_CDS: -5.57 Total: -101.82 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: -0.05 Total: -20.72 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -79.58 3.45 -76.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602095105.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.993 kcal (2) G-P(sol) polarization free energy of solvation -79.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds