Wall clock time and date at job start Tue Mar 31 2020 02:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47269 * 2 1 4 4 C 1.53003 * 109.46923 * 298.97329 * 3 2 1 5 5 C 1.47200 * 109.47361 * 58.97527 * 3 2 1 6 6 N 3.43550 * 83.39664 * 38.12747 * 2 1 3 7 7 C 1.50696 * 109.47086 * 178.97452 * 3 2 1 8 8 O 1.21287 * 120.00073 * 121.69474 * 7 3 2 9 9 N 1.34775 * 120.00059 * 301.69579 * 7 3 2 10 10 C 1.47079 * 120.87891 * 354.93089 * 9 7 3 11 11 C 1.53238 * 108.51927 * 231.16161 * 10 9 7 12 12 N 1.46899 * 109.34291 * 306.17114 * 11 10 9 13 13 C 1.46899 * 110.99997 * 187.25060 * 12 11 10 14 14 C 1.50703 * 109.46935 * 170.00196 * 13 12 11 15 15 H 1.07996 * 120.00114 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99804 * 180.02562 * 14 13 12 17 17 N 1.31515 * 119.99684 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 119.99870 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46930 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.46987 * 119.99954 * 18 16 14 21 21 H 1.48501 * 109.47171 * 239.99912 * 18 16 14 22 22 C 1.46899 * 111.26597 * 63.10747 * 12 11 10 23 23 C 1.47082 * 120.87965 * 174.91116 * 9 7 3 24 24 H 1.09005 * 109.47195 * 59.99582 * 1 2 3 25 25 H 1.08999 * 109.47794 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47149 * 300.00196 * 1 2 3 27 27 H 1.09000 * 109.46750 * 239.99916 * 2 1 3 28 28 H 1.08995 * 109.47000 * 119.99878 * 2 1 3 29 29 H 1.08997 * 109.47296 * 305.93907 * 4 3 2 30 30 H 1.09000 * 109.47124 * 65.94641 * 4 3 2 31 31 H 1.08999 * 109.47017 * 185.93725 * 4 3 2 32 32 H 1.09000 * 109.62497 * 111.45458 * 10 9 7 33 33 H 1.08991 * 109.63203 * 350.87511 * 10 9 7 34 34 H 1.09005 * 109.49172 * 186.21214 * 11 10 9 35 35 H 1.09006 * 109.49250 * 66.13618 * 11 10 9 36 36 H 1.08995 * 109.47586 * 290.00514 * 13 12 11 37 37 H 1.09005 * 109.47017 * 50.00228 * 13 12 11 38 38 H 0.97002 * 119.99194 * 179.97438 * 17 16 14 39 39 H 1.09000 * 109.49526 * 56.85321 * 22 12 11 40 40 H 1.09005 * 109.48917 * 176.90851 * 22 12 11 41 41 H 1.08999 * 109.63372 * 9.12849 * 23 9 7 42 42 H 1.08994 * 109.62597 * 248.54225 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5513 2.1562 -1.2620 5 6 1.5293 2.1436 1.1893 6 7 1.1350 2.6846 2.1070 7 6 3.5468 1.4425 0.0254 8 8 4.1683 1.9890 -0.8612 9 7 4.2038 0.8352 1.0334 10 6 3.4730 0.2631 2.1744 11 6 4.0968 0.7961 3.4686 12 7 5.5412 0.5283 3.4587 13 6 6.1484 0.8680 4.7525 14 6 7.5657 0.3572 4.7918 15 1 7.9745 -0.1670 3.9407 16 6 8.3404 0.5590 5.9144 17 7 7.8426 1.1978 6.9506 18 14 10.0968 -0.0748 5.9634 19 1 10.4138 -0.7542 4.6815 20 1 11.0286 1.0640 6.1642 21 1 10.2443 -1.0385 7.0835 22 6 6.2078 1.2413 2.3609 23 6 5.6705 0.7266 1.0213 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3635 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.8400 1.5794 -2.1406 30 1 0.4658 2.2496 -1.2293 31 1 1.9997 3.1482 -1.3151 32 1 3.5506 -0.8238 2.1511 33 1 2.4253 0.5594 2.1239 34 1 3.6404 0.2983 4.3242 35 1 3.9265 1.8705 3.5389 36 1 6.1486 1.9504 4.8808 37 1 5.5736 0.4071 5.5559 38 1 8.3875 1.3395 7.7405 39 1 6.0081 2.3094 2.4467 40 1 7.2825 1.0667 2.4135 41 1 6.0757 1.3292 0.2084 42 1 5.9593 -0.3158 0.8872 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602202841.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:01:49 Heat of formation + Delta-G solvation = 4.867925 kcal Electronic energy + Delta-G solvation = -22637.728753 eV Core-core repulsion = 19425.302773 eV Total energy + Delta-G solvation = -3212.425980 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.94266 -37.98009 -37.33219 -35.13018 -34.51889 -32.43350 -30.94460 -30.28012 -28.47114 -26.21005 -25.46192 -23.21911 -22.85252 -22.13288 -20.95522 -19.40022 -18.08656 -16.53561 -16.43462 -16.10972 -15.02228 -14.96280 -14.79840 -14.59592 -14.36458 -14.19053 -13.79500 -13.65464 -13.33484 -12.88993 -12.83107 -12.74012 -12.56737 -12.27678 -12.09591 -12.04481 -11.93427 -11.43387 -11.33090 -11.22142 -11.04782 -10.89814 -10.77381 -10.62449 -10.54424 -9.93160 -9.79146 -9.29166 -8.62880 -8.48718 -7.39593 -6.08216 -4.10386 2.16403 2.46109 2.56153 2.97104 3.28040 3.35717 3.39830 3.55395 4.12497 4.32038 4.36743 4.47844 4.69690 4.85996 4.99129 5.08931 5.20291 5.25682 5.30487 5.34835 5.41977 5.48965 5.54882 5.58458 5.63135 5.71143 5.79964 5.85969 5.89732 5.95786 6.14638 6.29437 6.46352 6.61375 7.17132 7.22004 7.24607 7.33865 7.70986 7.96134 7.98283 8.07609 8.43147 8.96967 9.54369 11.02705 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.031813 B = 0.004070 C = 0.003878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.937558 B = 6877.544886 C = 7218.402900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.123 4.123 3 C 0.020 3.980 4 C -0.127 4.127 5 C 0.210 3.790 6 N -0.406 5.406 7 C 0.526 3.474 8 O -0.529 6.529 9 N -0.599 5.599 10 C 0.103 3.897 11 C 0.040 3.960 12 N -0.533 5.533 13 C 0.193 3.807 14 C -0.509 4.509 15 H 0.065 0.935 16 C 0.056 3.944 17 N -0.897 5.897 18 Si 0.899 3.101 19 H -0.271 1.271 20 H -0.285 1.285 21 H -0.284 1.284 22 C 0.049 3.951 23 C 0.114 3.886 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.054 0.946 27 H 0.092 0.908 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.026 0.974 36 H -0.009 1.009 37 H 0.032 0.968 38 H 0.261 0.739 39 H 0.025 0.975 40 H 0.100 0.900 41 H 0.091 0.909 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.603 -3.249 -15.618 20.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.161 4.161 3 C 0.013 3.987 4 C -0.186 4.186 5 C -0.108 4.108 6 N -0.081 5.081 7 C 0.311 3.689 8 O -0.405 6.405 9 N -0.332 5.332 10 C -0.020 4.020 11 C -0.090 4.090 12 N -0.258 5.258 13 C 0.068 3.932 14 C -0.548 4.548 15 H 0.083 0.917 16 C -0.146 4.146 17 N -0.537 5.537 18 Si 0.726 3.274 19 H -0.196 1.196 20 H -0.211 1.211 21 H -0.210 1.210 22 C -0.080 4.080 23 C -0.007 4.007 24 H 0.084 0.916 25 H 0.086 0.914 26 H 0.074 0.926 27 H 0.110 0.890 28 H 0.105 0.895 29 H 0.102 0.898 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.103 0.897 33 H 0.097 0.903 34 H 0.101 0.899 35 H 0.045 0.955 36 H 0.009 0.991 37 H 0.050 0.950 38 H 0.071 0.929 39 H 0.043 0.957 40 H 0.118 0.882 41 H 0.109 0.891 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -13.735 -2.568 -14.577 20.192 hybrid contribution 0.968 0.407 0.255 1.081 sum -12.767 -2.162 -14.322 19.307 Atomic orbital electron populations 1.21885 0.94200 1.02800 1.02520 1.21921 0.97480 0.91464 1.05236 1.18612 0.93086 0.96926 0.90063 1.21748 1.01335 1.01620 0.93883 1.28375 0.94343 0.94112 0.94015 1.81294 1.08261 1.08340 1.10161 1.19870 0.88094 0.78703 0.82228 1.90711 1.68154 1.44068 1.37558 1.48218 1.08397 1.56055 1.20482 1.22240 0.94957 0.99238 0.85535 1.22374 0.91842 0.98454 0.96283 1.62121 1.00083 1.57192 1.06437 1.19741 0.94926 0.94548 0.83953 1.21162 0.96504 1.36084 1.01048 0.91668 1.25002 0.98756 0.95295 0.95530 1.69972 1.36911 1.41687 1.05098 0.86431 0.84274 0.78531 0.78125 1.19575 1.21103 1.20991 1.22362 1.00877 0.95095 0.89645 1.21956 0.77468 1.02337 0.98976 0.91631 0.91416 0.92643 0.88975 0.89465 0.89763 0.90920 0.90751 0.89738 0.90298 0.89901 0.95541 0.99090 0.95010 0.92902 0.95721 0.88197 0.89062 0.90372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.97 9.32 37.16 0.35 -0.62 16 2 C -0.12 -0.92 4.69 -26.73 -0.13 -1.04 16 3 C 0.02 0.20 0.49 -158.45 -0.08 0.13 16 4 C -0.13 -1.06 7.31 37.16 0.27 -0.79 16 5 C 0.21 2.60 9.76 -20.76 -0.20 2.40 16 6 N -0.41 -5.97 18.54 42.15 0.78 -5.19 16 7 C 0.53 7.14 6.46 -10.99 -0.07 7.07 16 8 O -0.53 -8.48 15.34 5.55 0.09 -8.39 16 9 N -0.60 -8.52 3.00 -172.47 -0.52 -9.04 16 10 C 0.10 1.39 4.55 -3.60 -0.02 1.38 16 11 C 0.04 0.70 5.62 -3.70 -0.02 0.68 16 12 N -0.53 -10.99 4.62 -235.75 -1.09 -12.08 16 13 C 0.19 4.93 4.72 -4.97 -0.02 4.90 16 14 C -0.51 -13.89 8.41 -34.44 -0.29 -14.18 16 15 H 0.07 1.74 7.13 -52.49 -0.37 1.37 16 16 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 17 N -0.90 -26.43 13.29 55.43 0.74 -25.69 16 18 Si 0.90 21.25 29.54 -169.99 -5.02 16.22 16 19 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 C 0.05 0.93 5.46 -3.70 -0.02 0.91 16 23 C 0.11 1.75 6.61 -3.60 -0.02 1.73 16 24 H 0.06 0.33 6.59 -51.93 -0.34 -0.01 16 25 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.41 7.20 -51.93 -0.37 0.04 16 27 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.09 0.68 4.97 -51.93 -0.26 0.43 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.46 6.77 -51.93 -0.35 0.11 16 31 H 0.07 0.72 7.90 -51.93 -0.41 0.31 16 32 H 0.08 1.02 7.97 -51.93 -0.41 0.61 16 33 H 0.08 0.95 3.46 -51.93 -0.18 0.77 16 34 H 0.08 1.41 7.99 -51.93 -0.41 1.00 16 35 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 36 H -0.01 -0.24 8.12 -51.93 -0.42 -0.67 16 37 H 0.03 0.86 7.97 -51.93 -0.41 0.45 16 38 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 39 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.10 2.00 6.67 -51.93 -0.35 1.65 16 41 H 0.09 1.38 7.04 -51.93 -0.37 1.01 16 42 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 331.44 15.07 4.99 4.99 Total: -1.00 -31.76 331.44 -6.72 -38.48 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: -6.34 Total: -3.33 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: -0.35 Total: 4.02 kcal Atomic # 7 Polarization: -51.91 SS G_CDS: -0.09 Total: -52.00 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: 0.09 Total: -8.39 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.76 -6.72 -38.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602202841.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.348 kcal (2) G-P(sol) polarization free energy of solvation -31.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds