Wall clock time and date at job start Tue Mar 31 2020 02:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47204 * 1 3 3 C 1.17400 * 179.97438 * 2 1 4 4 C 1.47196 * 179.97438 * 131.90813 * 3 2 1 5 5 C 1.53001 * 109.47388 * 353.64319 * 4 3 2 6 6 N 1.46503 * 109.46836 * 179.97438 * 5 4 3 7 7 C 1.34780 * 119.99662 * 180.02562 * 6 5 4 8 8 O 1.21581 * 120.00089 * 354.92306 * 7 6 5 9 9 N 1.34774 * 119.99633 * 175.19700 * 7 6 5 10 10 C 1.47081 * 120.87815 * 184.43638 * 9 7 6 11 11 C 1.53694 * 108.27814 * 128.75300 * 10 9 7 12 12 N 1.46897 * 109.25719 * 54.08280 * 11 10 9 13 13 C 1.46894 * 111.00511 * 172.60739 * 12 11 10 14 14 C 1.50702 * 109.47090 * 294.30409 * 13 12 11 15 15 H 1.07997 * 119.99963 * 359.97438 * 14 13 12 16 16 C 1.37880 * 120.00192 * 179.97438 * 14 13 12 17 17 N 1.31509 * 120.00248 * 179.97438 * 16 14 13 18 18 Si 1.86806 * 119.99801 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.47378 * 90.00125 * 18 16 14 20 20 H 1.48506 * 109.46831 * 209.99969 * 18 16 14 21 21 H 1.48503 * 109.47043 * 329.99785 * 18 16 14 22 22 C 1.46904 * 111.26796 * 296.75582 * 12 11 10 23 23 C 1.47078 * 120.88580 * 4.71390 * 9 7 6 24 24 H 1.08997 * 109.47276 * 54.45066 * 1 2 3 25 25 H 1.09002 * 109.46618 * 174.45037 * 1 2 3 26 26 H 1.08999 * 109.47224 * 294.44532 * 1 2 3 27 27 H 1.09002 * 109.46896 * 233.64021 * 4 3 2 28 28 H 1.08999 * 109.46770 * 113.64634 * 4 3 2 29 29 H 1.08996 * 109.46823 * 60.00386 * 5 4 3 30 30 H 1.08997 * 109.46919 * 300.00004 * 5 4 3 31 31 H 0.96993 * 120.00327 * 0.02562 * 6 5 4 32 32 H 1.09002 * 109.63018 * 248.51866 * 10 9 7 33 33 H 1.09001 * 109.63196 * 9.10190 * 10 9 7 34 34 H 1.08993 * 109.65015 * 294.08090 * 11 10 9 35 35 H 1.09000 * 109.42046 * 173.94552 * 11 10 9 36 36 H 1.09002 * 109.47044 * 54.30158 * 13 12 11 37 37 H 1.08998 * 109.47782 * 174.29998 * 13 12 11 38 38 H 0.96994 * 120.00262 * 180.02562 * 17 16 14 39 39 H 1.08997 * 109.49477 * 303.14367 * 22 12 11 40 40 H 1.08997 * 109.49313 * 183.05854 * 22 12 11 41 41 H 1.09003 * 109.62597 * 350.89567 * 23 9 7 42 42 H 1.08993 * 109.63151 * 111.47962 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0016 -0.0005 5 6 4.6292 -1.4316 0.1591 6 7 6.0942 -1.4304 0.1579 7 6 6.7691 -2.5900 0.2863 8 8 6.1657 -3.6246 0.4954 9 7 8.1132 -2.6018 0.1884 10 6 8.8619 -3.8671 0.2285 11 6 9.8076 -3.9063 -0.9825 12 7 10.6374 -2.6942 -0.9885 13 6 11.6743 -2.7711 -2.0262 14 6 12.6423 -3.8755 -1.6881 15 1 12.5016 -4.4614 -0.7918 16 6 13.7077 -4.1381 -2.5230 17 7 14.5527 -5.1015 -2.2277 18 14 13.9508 -3.1253 -4.0737 19 1 14.8015 -1.9474 -3.7674 20 1 14.6128 -3.9579 -5.1100 21 1 12.6313 -2.6656 -4.5766 22 6 9.8164 -1.4871 -1.1533 23 6 8.8707 -1.3493 0.0446 24 1 -0.3634 0.5975 -0.8361 25 1 -0.3633 -1.0229 -0.0994 26 1 -0.3633 0.4253 0.9355 27 1 4.4811 0.6112 0.8270 28 1 4.4807 0.4141 -0.9420 29 1 4.2661 -2.0410 -0.6685 30 1 4.2665 -1.8440 1.1006 31 1 6.5785 -0.5952 0.0648 32 1 9.4406 -3.9211 1.1506 33 1 8.1671 -4.7055 0.1793 34 1 9.2240 -3.9521 -1.9019 35 1 10.4483 -4.7854 -0.9137 36 1 11.2092 -2.9781 -2.9900 37 1 12.2087 -1.8225 -2.0770 38 1 15.3024 -5.2860 -2.8149 39 1 9.2327 -1.5666 -2.0703 40 1 10.4635 -0.6118 -1.2083 41 1 8.1816 -0.5222 -0.1262 42 1 9.4502 -1.1659 0.9494 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602301122.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:01:57 Heat of formation + Delta-G solvation = 32.062733 kcal Electronic energy + Delta-G solvation = -21193.436036 eV Core-core repulsion = 17982.189312 eV Total energy + Delta-G solvation = -3211.246725 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.28190 -37.86608 -36.16098 -34.52744 -34.20269 -32.40003 -31.55067 -30.58571 -28.77216 -27.54826 -25.64821 -23.81508 -22.97765 -21.86260 -20.67453 -19.47171 -18.07044 -16.94519 -16.80751 -16.07753 -15.99118 -15.06538 -14.86434 -14.59489 -14.50302 -14.17992 -14.05843 -13.91173 -13.77042 -13.50535 -13.48314 -13.08310 -12.63421 -12.44922 -12.15217 -12.08164 -11.60562 -11.24912 -10.95271 -10.79955 -10.56442 -10.38745 -10.17592 -10.05308 -10.00635 -9.90392 -9.34748 -9.22533 -8.61237 -8.39941 -7.47454 -6.09164 -4.07214 2.25888 2.38971 2.73059 3.24782 3.26416 3.32931 3.33867 3.74833 4.05509 4.37841 4.57983 4.65737 4.78127 5.04625 5.10562 5.17208 5.18877 5.20408 5.27984 5.28885 5.34344 5.54507 5.56829 5.63155 5.67381 5.75933 5.87081 5.96790 6.06821 6.33777 6.36755 6.49618 6.58514 6.79291 6.91735 7.00080 7.31367 7.51639 7.78265 7.93848 7.97020 8.59387 8.63091 8.98725 9.51960 11.03702 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.036189 B = 0.002808 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.524808 B = 9968.791324 C =10347.374489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 C -0.184 4.184 3 C -0.187 4.187 4 C -0.015 4.015 5 C 0.145 3.855 6 N -0.752 5.752 7 C 0.708 3.292 8 O -0.594 6.594 9 N -0.626 5.626 10 C 0.134 3.866 11 C 0.050 3.950 12 N -0.526 5.526 13 C 0.163 3.837 14 C -0.512 4.512 15 H 0.082 0.918 16 C 0.069 3.931 17 N -0.898 5.898 18 Si 0.875 3.125 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.269 1.269 22 C 0.037 3.963 23 C 0.119 3.881 24 H 0.080 0.920 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.396 0.604 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.025 0.975 35 H 0.103 0.897 36 H -0.011 1.011 37 H 0.025 0.975 38 H 0.264 0.736 39 H 0.027 0.973 40 H 0.081 0.919 41 H 0.070 0.930 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.678 12.970 3.972 25.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.184 4.184 3 C -0.187 4.187 4 C -0.052 4.052 5 C 0.020 3.980 6 N -0.411 5.411 7 C 0.410 3.590 8 O -0.472 6.472 9 N -0.363 5.363 10 C 0.011 3.989 11 C -0.079 4.079 12 N -0.250 5.250 13 C 0.037 3.963 14 C -0.550 4.550 15 H 0.100 0.900 16 C -0.133 4.133 17 N -0.537 5.537 18 Si 0.703 3.297 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.194 1.194 22 C -0.092 4.092 23 C -0.005 4.005 24 H 0.098 0.902 25 H 0.100 0.900 26 H 0.098 0.902 27 H 0.110 0.890 28 H 0.110 0.890 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.232 0.768 32 H 0.091 0.909 33 H 0.108 0.892 34 H 0.043 0.957 35 H 0.121 0.879 36 H 0.006 0.994 37 H 0.043 0.957 38 H 0.074 0.926 39 H 0.045 0.955 40 H 0.099 0.901 41 H 0.088 0.912 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -21.719 12.122 4.493 25.275 hybrid contribution 0.202 0.994 -1.788 2.055 sum -21.517 13.115 2.705 25.344 Atomic orbital electron populations 1.18879 0.84564 1.03233 1.03034 1.22432 0.93951 1.00449 1.01560 1.21849 0.93154 1.02159 1.01572 1.18761 0.85188 0.97381 1.03842 1.21027 0.78716 0.95315 1.02935 1.45206 1.06694 1.08584 1.80638 1.15783 0.81568 0.83717 0.77980 1.90900 1.67679 1.31803 1.56841 1.47426 1.03683 1.08748 1.76428 1.21840 0.93304 0.84583 0.99197 1.22500 0.94510 0.95623 0.95284 1.61894 1.12494 1.00274 1.50380 1.20177 0.90052 0.97977 0.88132 1.21011 1.08338 1.15769 1.09877 0.89998 1.24902 0.95669 0.95065 0.97669 1.69885 1.15016 1.30668 1.38108 0.86866 0.78616 0.80569 0.83692 1.20138 1.21184 1.19377 1.22441 0.95369 0.95896 0.95532 1.21750 0.93807 0.85158 0.99779 0.90170 0.89991 0.90161 0.88954 0.88970 0.91375 0.91184 0.76791 0.90891 0.89184 0.95661 0.87878 0.99376 0.95662 0.92603 0.95453 0.90080 0.91152 0.90420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.22 10.32 34.37 0.35 0.13 16 2 C -0.18 -1.68 14.13 -37.12 -0.52 -2.20 16 3 C -0.19 -1.78 13.34 -37.12 -0.50 -2.27 16 4 C -0.01 -0.11 5.82 -29.52 -0.17 -0.28 16 5 C 0.14 1.46 5.64 -4.04 -0.02 1.44 16 6 N -0.75 -8.28 5.47 -65.23 -0.36 -8.63 16 7 C 0.71 10.85 8.31 -86.92 -0.72 10.13 16 8 O -0.59 -11.34 15.83 5.29 0.08 -11.26 16 9 N -0.63 -9.33 3.00 -177.91 -0.53 -9.86 16 10 C 0.13 2.20 6.61 -3.36 -0.02 2.18 16 11 C 0.05 0.94 5.47 -3.46 -0.02 0.92 16 12 N -0.53 -10.40 4.62 -235.47 -1.09 -11.49 16 13 C 0.16 3.80 3.79 -4.98 -0.02 3.78 16 14 C -0.51 -14.11 8.96 -34.44 -0.31 -14.42 16 15 H 0.08 2.45 7.37 -52.49 -0.39 2.06 16 16 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 17 N -0.90 -27.05 13.96 55.43 0.77 -26.28 16 18 Si 0.88 21.07 27.47 -169.99 -4.67 16.40 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 22 C 0.04 0.57 5.62 -3.70 -0.02 0.55 16 23 C 0.12 1.47 6.59 -3.60 -0.02 1.45 16 24 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 25 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.40 3.23 5.97 -40.82 -0.24 2.98 16 32 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.09 1.52 7.09 -51.93 -0.37 1.15 16 34 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.10 2.15 6.67 -51.93 -0.35 1.80 16 36 H -0.01 -0.28 7.18 -51.93 -0.37 -0.65 16 37 H 0.03 0.58 7.40 -51.93 -0.38 0.20 16 38 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 39 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.08 1.14 7.99 -51.93 -0.41 0.73 16 41 H 0.07 0.62 5.64 -51.93 -0.29 0.32 16 42 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 344.35 15.07 5.19 5.19 Total: -1.00 -33.98 344.35 -9.32 -43.30 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -6.63 Total: -0.64 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: -2.09 Total: 3.26 kcal Atomic # 7 Polarization: -55.06 SS G_CDS: -1.21 Total: -56.27 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.08 Total: -11.26 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.67 Total: 16.40 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.98 -9.32 -43.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602301122.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.366 kcal (2) G-P(sol) polarization free energy of solvation -33.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds