Wall clock time and date at job start Tue Mar 31 2020 02:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47204 * 1 3 3 C 1.17400 * 179.97438 * 2 1 4 4 C 1.47196 * 179.97438 * 131.90813 * 3 2 1 5 5 C 1.53001 * 109.47388 * 353.64319 * 4 3 2 6 6 N 1.46503 * 109.46836 * 179.97438 * 5 4 3 7 7 C 1.34780 * 119.99662 * 180.02562 * 6 5 4 8 8 O 1.21581 * 120.00089 * 354.92306 * 7 6 5 9 9 N 1.34774 * 119.99633 * 175.19700 * 7 6 5 10 10 C 1.47081 * 120.87815 * 184.43638 * 9 7 6 11 11 C 1.53694 * 108.27814 * 128.75300 * 10 9 7 12 12 N 1.46897 * 109.25719 * 54.08280 * 11 10 9 13 13 C 1.46894 * 111.00511 * 172.60739 * 12 11 10 14 14 C 1.50702 * 109.47090 * 294.30409 * 13 12 11 15 15 H 1.07997 * 119.99963 * 359.97438 * 14 13 12 16 16 C 1.37880 * 120.00192 * 179.97438 * 14 13 12 17 17 N 1.31509 * 120.00248 * 179.97438 * 16 14 13 18 18 Si 1.86806 * 119.99801 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.47378 * 90.00125 * 18 16 14 20 20 H 1.48506 * 109.46831 * 209.99969 * 18 16 14 21 21 H 1.48503 * 109.47043 * 329.99785 * 18 16 14 22 22 C 1.46904 * 111.26796 * 296.75582 * 12 11 10 23 23 C 1.47078 * 120.88580 * 4.71390 * 9 7 6 24 24 H 1.08997 * 109.47276 * 54.45066 * 1 2 3 25 25 H 1.09002 * 109.46618 * 174.45037 * 1 2 3 26 26 H 1.08999 * 109.47224 * 294.44532 * 1 2 3 27 27 H 1.09002 * 109.46896 * 233.64021 * 4 3 2 28 28 H 1.08999 * 109.46770 * 113.64634 * 4 3 2 29 29 H 1.08996 * 109.46823 * 60.00386 * 5 4 3 30 30 H 1.08997 * 109.46919 * 300.00004 * 5 4 3 31 31 H 0.96993 * 120.00327 * 0.02562 * 6 5 4 32 32 H 1.09002 * 109.63018 * 248.51866 * 10 9 7 33 33 H 1.09001 * 109.63196 * 9.10190 * 10 9 7 34 34 H 1.08993 * 109.65015 * 294.08090 * 11 10 9 35 35 H 1.09000 * 109.42046 * 173.94552 * 11 10 9 36 36 H 1.09002 * 109.47044 * 54.30158 * 13 12 11 37 37 H 1.08998 * 109.47782 * 174.29998 * 13 12 11 38 38 H 0.96994 * 120.00262 * 180.02562 * 17 16 14 39 39 H 1.08997 * 109.49477 * 303.14367 * 22 12 11 40 40 H 1.08997 * 109.49313 * 183.05854 * 22 12 11 41 41 H 1.09003 * 109.62597 * 350.89567 * 23 9 7 42 42 H 1.08993 * 109.63151 * 111.47962 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0016 -0.0005 5 6 4.6292 -1.4316 0.1591 6 7 6.0942 -1.4304 0.1579 7 6 6.7691 -2.5900 0.2863 8 8 6.1657 -3.6246 0.4954 9 7 8.1132 -2.6018 0.1884 10 6 8.8619 -3.8671 0.2285 11 6 9.8076 -3.9063 -0.9825 12 7 10.6374 -2.6942 -0.9885 13 6 11.6743 -2.7711 -2.0262 14 6 12.6423 -3.8755 -1.6881 15 1 12.5016 -4.4614 -0.7918 16 6 13.7077 -4.1381 -2.5230 17 7 14.5527 -5.1015 -2.2277 18 14 13.9508 -3.1253 -4.0737 19 1 14.8015 -1.9474 -3.7674 20 1 14.6128 -3.9579 -5.1100 21 1 12.6313 -2.6656 -4.5766 22 6 9.8164 -1.4871 -1.1533 23 6 8.8707 -1.3493 0.0446 24 1 -0.3634 0.5975 -0.8361 25 1 -0.3633 -1.0229 -0.0994 26 1 -0.3633 0.4253 0.9355 27 1 4.4811 0.6112 0.8270 28 1 4.4807 0.4141 -0.9420 29 1 4.2661 -2.0410 -0.6685 30 1 4.2665 -1.8440 1.1006 31 1 6.5785 -0.5952 0.0648 32 1 9.4406 -3.9211 1.1506 33 1 8.1671 -4.7055 0.1793 34 1 9.2240 -3.9521 -1.9019 35 1 10.4483 -4.7854 -0.9137 36 1 11.2092 -2.9781 -2.9900 37 1 12.2087 -1.8225 -2.0770 38 1 15.3024 -5.2860 -2.8149 39 1 9.2327 -1.5666 -2.0703 40 1 10.4635 -0.6118 -1.2083 41 1 8.1816 -0.5222 -0.1262 42 1 9.4502 -1.1659 0.9494 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602301122.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:01:56 Heat of formation + Delta-G solvation = 7.872407 kcal Electronic energy + Delta-G solvation = -21194.485007 eV Core-core repulsion = 17982.189312 eV Total energy + Delta-G solvation = -3212.295696 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.48001 -39.22493 -37.04848 -36.00371 -35.02896 -34.37669 -32.47397 -31.70583 -30.38854 -28.33206 -27.14670 -24.92359 -24.05358 -23.46229 -22.13200 -20.67165 -19.30427 -18.85744 -17.74392 -17.03451 -16.95378 -16.60401 -16.04900 -16.02788 -15.78852 -15.39412 -15.25895 -15.06339 -14.56341 -14.44875 -14.42212 -14.19428 -14.15230 -13.63742 -13.29316 -13.14050 -12.87987 -12.82932 -12.48868 -12.30045 -12.21926 -11.95223 -11.85564 -11.46148 -11.25707 -10.76851 -10.75126 -10.64045 -10.30837 -9.61836 -9.03840 -8.26751 -6.30385 1.35950 1.37898 1.42065 1.47799 1.75322 1.80384 2.06498 2.35391 2.83137 3.05537 3.16249 3.44101 3.92988 3.96915 4.04969 4.12607 4.16592 4.25504 4.42937 4.43982 4.54129 4.71956 4.78560 4.80415 4.81860 4.83669 4.86179 4.93624 4.96548 4.96831 5.02442 5.10399 5.13138 5.40734 5.42072 5.53492 5.84991 6.01637 6.28866 6.63236 6.68255 6.76436 6.91999 7.33135 7.48082 8.89599 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.036189 B = 0.002808 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.524808 B = 9968.791324 C =10347.374489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 C -0.198 4.198 3 C -0.217 4.217 4 C -0.004 4.004 5 C 0.148 3.852 6 N -0.731 5.731 7 C 0.704 3.296 8 O -0.637 6.637 9 N -0.627 5.627 10 C 0.145 3.855 11 C 0.058 3.942 12 N -0.539 5.539 13 C 0.172 3.828 14 C -0.517 4.517 15 H 0.040 0.960 16 C 0.006 3.994 17 N -0.948 5.948 18 Si 0.948 3.052 19 H -0.262 1.262 20 H -0.286 1.286 21 H -0.252 1.252 22 C 0.034 3.966 23 C 0.122 3.878 24 H 0.094 0.906 25 H 0.089 0.911 26 H 0.094 0.906 27 H 0.113 0.887 28 H 0.110 0.890 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.413 0.587 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.019 0.981 35 H 0.070 0.930 36 H -0.016 1.016 37 H 0.038 0.962 38 H 0.266 0.734 39 H 0.029 0.971 40 H 0.101 0.899 41 H 0.116 0.884 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.083 16.373 3.267 28.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.198 4.198 3 C -0.218 4.218 4 C -0.040 4.040 5 C 0.024 3.976 6 N -0.390 5.390 7 C 0.406 3.594 8 O -0.519 6.519 9 N -0.364 5.364 10 C 0.021 3.979 11 C -0.071 4.071 12 N -0.263 5.263 13 C 0.045 3.955 14 C -0.555 4.555 15 H 0.058 0.942 16 C -0.191 4.191 17 N -0.588 5.588 18 Si 0.772 3.228 19 H -0.186 1.186 20 H -0.212 1.212 21 H -0.176 1.176 22 C -0.095 4.095 23 C 0.000 4.000 24 H 0.112 0.888 25 H 0.108 0.892 26 H 0.112 0.888 27 H 0.131 0.869 28 H 0.129 0.871 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.253 0.747 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.037 0.963 35 H 0.089 0.911 36 H 0.001 0.999 37 H 0.056 0.944 38 H 0.075 0.925 39 H 0.047 0.953 40 H 0.119 0.881 41 H 0.134 0.866 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -23.147 15.597 3.798 28.169 hybrid contribution 0.565 -0.107 -1.486 1.594 sum -22.582 15.490 2.311 27.482 Atomic orbital electron populations 1.19099 0.82591 1.04140 1.04358 1.23383 0.95335 0.99811 1.01293 1.22443 0.94194 1.02958 1.02208 1.18740 0.84141 0.95500 1.05650 1.21005 0.77919 0.97126 1.01561 1.45001 1.07003 1.07946 1.79091 1.15961 0.81506 0.84204 0.77774 1.90874 1.68526 1.33757 1.58718 1.47406 1.03782 1.08914 1.76307 1.21535 0.92722 0.85716 0.97878 1.22327 0.94080 0.94531 0.96161 1.61792 1.13259 1.02124 1.49169 1.19942 0.90263 0.96544 0.88739 1.21271 1.09378 1.16480 1.08374 0.94184 1.25865 0.95330 0.96356 1.01569 1.70049 1.16010 1.32888 1.39900 0.85700 0.79325 0.78972 0.78805 1.18630 1.21180 1.17633 1.22624 0.95680 0.94188 0.96977 1.21938 0.94091 0.85157 0.98841 0.88757 0.89220 0.88795 0.86875 0.87150 0.92991 0.92590 0.74734 0.90800 0.89935 0.96300 0.91118 0.99857 0.94418 0.92494 0.95318 0.88058 0.86586 0.89602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.42 10.32 70.18 0.72 0.31 16 2 C -0.20 -3.35 14.13 31.13 0.44 -2.91 16 3 C -0.22 -3.79 13.34 31.12 0.42 -3.38 16 4 C 0.00 -0.04 5.82 28.79 0.17 0.12 16 5 C 0.15 2.76 5.64 86.38 0.49 3.25 16 6 N -0.73 -14.10 5.47 -478.54 -2.62 -16.72 16 7 C 0.70 20.50 8.31 179.05 1.49 21.99 16 8 O -0.64 -24.29 15.83 -3.97 -0.06 -24.35 16 9 N -0.63 -17.61 3.00 -835.04 -2.51 -20.12 16 10 C 0.15 4.82 6.61 86.50 0.57 5.39 16 11 C 0.06 2.25 5.47 86.54 0.47 2.72 16 12 N -0.54 -20.87 4.62 -898.90 -4.15 -25.02 16 13 C 0.17 7.89 3.79 85.56 0.32 8.22 16 14 C -0.52 -29.21 8.96 25.60 0.23 -28.98 16 15 H 0.04 2.53 7.37 -2.91 -0.02 2.51 16 16 C 0.01 0.35 5.47 84.66 0.46 0.81 16 17 N -0.95 -58.79 13.96 21.45 0.30 -58.49 16 18 Si 0.95 43.14 27.47 68.60 1.88 45.02 16 19 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 20 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 21 H -0.25 -10.72 6.54 99.48 0.65 -10.07 16 22 C 0.03 0.94 5.62 86.38 0.49 1.42 16 23 C 0.12 2.59 6.59 86.35 0.57 3.16 16 24 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 25 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.41 4.92 5.97 -92.71 -0.55 4.37 16 32 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.08 2.86 7.09 -2.39 -0.02 2.85 16 34 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.07 3.15 6.67 -2.39 -0.02 3.13 16 36 H -0.02 -0.76 7.18 -2.39 -0.02 -0.78 16 37 H 0.04 1.65 7.40 -2.39 -0.02 1.63 16 38 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 39 H 0.03 0.80 8.14 -2.39 -0.02 0.79 16 40 H 0.10 2.43 7.99 -2.39 -0.02 2.41 16 41 H 0.12 1.40 5.64 -2.39 -0.01 1.39 16 42 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -76.72 344.35 0.09 -76.63 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: 0.41 Total: 10.91 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: 6.84 Total: 12.12 kcal Atomic # 7 Polarization: -111.37 SS G_CDS: -8.98 Total: -120.35 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: -0.06 Total: -24.35 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 1.88 Total: 45.02 kcal Total: -76.72 0.09 -76.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602301122.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.507 kcal (2) G-P(sol) polarization free energy of solvation -76.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds