Wall clock time and date at job start Tue Mar 31 2020 02:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47010 * 120.00125 * 2 1 3 5 5 H 1.08995 * 109.47098 * 299.99700 * 4 2 1 6 6 N 1.46498 * 109.47257 * 179.97438 * 4 2 1 7 7 C 1.34777 * 119.99828 * 84.72116 * 6 4 2 8 8 O 1.21283 * 120.00222 * 0.28168 * 7 6 4 9 9 C 1.50703 * 120.00290 * 180.27728 * 7 6 4 10 10 C 1.52990 * 109.47398 * 180.02562 * 9 7 6 11 11 C 1.52995 * 109.47353 * 179.97438 * 10 9 7 12 12 C 1.50702 * 109.47846 * 180.02562 * 11 10 9 13 13 H 1.08010 * 119.99192 * 0.02562 * 12 11 10 14 14 C 1.37869 * 120.00564 * 180.02562 * 12 11 10 15 15 N 1.31515 * 119.99836 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00096 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.46726 * 60.00418 * 16 14 12 18 18 H 1.48496 * 109.47105 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47194 * 300.00214 * 16 14 12 20 20 C 1.50696 * 109.47087 * 59.99796 * 4 2 1 21 21 N 1.30503 * 125.65424 * 305.02355 * 20 4 2 22 22 C 1.34125 * 109.25633 * 179.97438 * 21 20 4 23 23 C 1.34666 * 108.02389 * 0.02562 * 22 21 20 24 24 N 1.35048 * 125.64811 * 124.71739 * 20 4 2 25 25 H 0.96998 * 126.39528 * 0.02562 * 24 20 4 26 26 H 1.09003 * 109.47062 * 300.00363 * 1 2 3 27 27 H 1.08996 * 109.47077 * 59.99864 * 1 2 3 28 28 H 1.08996 * 109.47248 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.46945 * 239.99919 * 2 1 3 30 30 H 1.09003 * 109.47146 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.47253 * 300.00028 * 3 2 1 32 32 H 1.08995 * 109.47275 * 60.00121 * 3 2 1 33 33 H 0.97001 * 120.00384 * 265.00562 * 6 4 2 34 34 H 1.08998 * 109.46954 * 300.00581 * 9 7 6 35 35 H 1.09002 * 109.46946 * 59.99717 * 9 7 6 36 36 H 1.08998 * 109.47508 * 300.00200 * 10 9 7 37 37 H 1.09011 * 109.47182 * 60.00188 * 10 9 7 38 38 H 1.08999 * 109.47616 * 300.00389 * 11 10 9 39 39 H 1.09003 * 109.47280 * 60.00024 * 11 10 9 40 40 H 0.97000 * 119.99614 * 179.97438 * 15 14 12 41 41 H 1.08008 * 125.98454 * 180.02562 * 22 21 20 42 42 H 1.07996 * 126.59012 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2075 2.1392 6 7 3.5050 -0.7218 1.2490 7 6 4.1793 0.3382 1.7369 8 8 3.5734 1.2904 2.1808 9 6 5.6863 0.3404 1.7309 10 6 6.1969 1.6496 2.3357 11 6 7.7268 1.6516 2.3302 12 6 8.2298 2.9410 2.9265 13 1 7.5282 3.6846 3.2750 14 6 9.5854 3.1714 3.0272 15 7 10.4396 2.2661 2.6025 16 14 10.2088 4.7694 3.7671 17 1 9.7193 4.8923 5.1637 18 1 11.6937 4.7718 3.7605 19 1 9.7089 5.9146 2.9646 20 6 1.5376 -2.1420 1.2492 21 7 0.2881 -2.5071 1.1563 22 6 0.2148 -3.8459 1.1889 23 6 1.4663 -4.3290 1.3070 24 7 2.3064 -3.2487 1.3394 25 1 3.2730 -3.2733 1.4157 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9563 0.8899 33 1 3.9897 -1.4834 0.8939 34 1 6.0532 -0.4994 2.3210 35 1 6.0457 0.2486 0.7059 36 1 5.8300 2.4897 1.7460 37 1 5.8375 1.7409 3.3608 38 1 8.0934 0.8116 2.9202 39 1 8.0866 1.5601 1.3054 40 1 11.3933 2.4284 2.6730 41 1 -0.6895 -4.4336 1.1306 42 1 1.7525 -5.3689 1.3612 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603159405.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:28:15 Heat of formation + Delta-G solvation = 2.385903 kcal Electronic energy + Delta-G solvation = -21659.233235 eV Core-core repulsion = 18446.699626 eV Total energy + Delta-G solvation = -3212.533608 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.48509 -39.90153 -36.62551 -34.21429 -33.81552 -32.52121 -31.98768 -30.25557 -28.13383 -26.82735 -26.09890 -23.70282 -21.94851 -21.31591 -20.62534 -20.24974 -19.90684 -18.62014 -16.73449 -16.37280 -15.95439 -15.83879 -15.25791 -14.74058 -14.44724 -14.24872 -14.05431 -13.80994 -13.59464 -12.95878 -12.71206 -12.46019 -12.29412 -11.98222 -11.85550 -11.57289 -11.40116 -11.05472 -10.81906 -10.78406 -10.66754 -10.57141 -10.35704 -9.93139 -9.75455 -9.71684 -9.31932 -9.28126 -9.06789 -8.65527 -8.34212 -6.00154 -4.01703 1.71281 2.65136 2.76588 2.82506 3.02231 3.35197 3.38690 3.42547 4.11148 4.47284 4.64355 4.77848 4.87321 5.00170 5.06423 5.23914 5.30612 5.36076 5.51502 5.60927 5.61508 5.66121 5.71739 5.80665 5.99723 6.05107 6.14401 6.17034 6.21602 6.37480 6.49323 6.62491 6.67235 6.87560 6.97973 7.11654 7.35504 7.67187 7.75571 7.79515 8.00138 8.30104 8.43936 9.05172 9.62515 11.11332 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.031156 B = 0.003085 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.484838 B = 9072.856829 C = 9714.216239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.092 4.092 3 C -0.140 4.140 4 C 0.235 3.765 5 H 0.113 0.887 6 N -0.744 5.744 7 C 0.517 3.483 8 O -0.520 6.520 9 C -0.139 4.139 10 C -0.095 4.095 11 C 0.021 3.979 12 C -0.519 4.519 13 H 0.056 0.944 14 C 0.056 3.944 15 N -0.898 5.898 16 Si 0.892 3.108 17 H -0.276 1.276 18 H -0.288 1.288 19 H -0.276 1.276 20 C 0.209 3.791 21 N -0.474 5.474 22 C -0.029 4.029 23 C -0.055 4.055 24 N -0.565 5.565 25 H 0.418 0.582 26 H 0.053 0.947 27 H 0.048 0.952 28 H 0.091 0.909 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.049 0.951 32 H 0.066 0.934 33 H 0.392 0.608 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.056 0.944 37 H 0.055 0.945 38 H 0.015 0.985 39 H 0.015 0.985 40 H 0.260 0.740 41 H 0.172 0.828 42 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.815 -14.472 -5.969 23.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.112 4.112 3 C -0.198 4.198 4 C 0.129 3.871 5 H 0.131 0.869 6 N -0.398 5.398 7 C 0.306 3.694 8 O -0.394 6.394 9 C -0.178 4.178 10 C -0.133 4.133 11 C -0.016 4.016 12 C -0.557 4.557 13 H 0.074 0.926 14 C -0.145 4.145 15 N -0.538 5.538 16 Si 0.720 3.280 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.056 4.056 21 N -0.194 5.194 22 C -0.177 4.177 23 C -0.188 4.188 24 N -0.168 5.168 25 H 0.256 0.744 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.110 0.890 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.226 0.774 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.033 0.967 39 H 0.034 0.966 40 H 0.070 0.930 41 H 0.189 0.811 42 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -18.772 -13.277 -5.705 23.690 hybrid contribution 1.871 -0.399 0.280 1.933 sum -16.902 -13.676 -5.425 22.408 Atomic orbital electron populations 1.22063 0.93550 1.04641 1.01152 1.21387 0.97243 0.96669 0.95918 1.21902 1.01442 0.94551 1.01886 1.19321 0.80033 0.86414 1.01375 0.86934 1.46183 1.05870 1.21779 1.66014 1.21219 0.91083 0.81289 0.75829 1.90715 1.70350 1.33729 1.44621 1.21875 0.89009 1.03264 1.03697 1.21452 0.99111 0.92835 0.99885 1.19121 0.88244 0.97147 0.97100 1.21231 0.91574 1.02841 1.40087 0.92599 1.25014 0.97054 0.96765 0.95635 1.69950 1.02043 1.34360 1.47440 0.86650 0.77481 0.84004 0.79847 1.20207 1.21329 1.20196 1.23302 0.87131 0.89944 1.05207 1.70164 1.16941 1.12623 1.19668 1.22434 0.97002 0.90866 1.07358 1.22798 0.91213 0.93077 1.11742 1.43247 1.10586 1.06645 1.56350 0.74362 0.92789 0.93305 0.89041 0.91555 0.92520 0.93207 0.91527 0.77445 0.89402 0.89267 0.92545 0.92614 0.96684 0.96633 0.92998 0.81109 0.80495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 8.79 37.16 0.33 -1.37 16 2 C -0.09 -1.02 2.68 -90.62 -0.24 -1.27 16 3 C -0.14 -1.80 7.71 37.16 0.29 -1.51 16 4 C 0.24 2.64 2.39 -69.09 -0.16 2.47 16 5 H 0.11 1.50 7.58 -51.93 -0.39 1.10 16 6 N -0.74 -7.83 4.87 -54.94 -0.27 -8.10 16 7 C 0.52 7.44 6.17 -10.98 -0.07 7.37 16 8 O -0.52 -9.31 13.09 5.55 0.07 -9.24 16 9 C -0.14 -2.10 5.70 -27.89 -0.16 -2.26 16 10 C -0.09 -1.96 4.44 -26.74 -0.12 -2.07 16 11 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 12 C -0.52 -14.82 9.11 -34.44 -0.31 -15.14 16 13 H 0.06 1.57 7.74 -52.48 -0.41 1.17 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.90 -26.84 13.29 55.43 0.74 -26.11 16 16 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 C 0.21 2.17 7.12 -155.41 -1.11 1.06 16 21 N -0.47 -5.38 8.32 -10.81 -0.09 -5.47 16 22 C -0.03 -0.26 11.87 -17.81 -0.21 -0.47 16 23 C -0.05 -0.39 12.04 -16.56 -0.20 -0.59 16 24 N -0.56 -4.36 5.88 -10.23 -0.06 -4.42 16 25 H 0.42 2.19 7.70 -40.82 -0.31 1.88 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.09 1.05 5.30 -51.93 -0.28 0.77 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.81 5.76 -51.93 -0.30 0.51 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.95 7.53 -51.93 -0.39 0.56 16 33 H 0.39 2.95 7.28 -40.82 -0.30 2.65 16 34 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 35 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 37 H 0.06 1.20 8.10 -51.92 -0.42 0.78 16 38 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 41 H 0.17 1.12 8.06 -52.48 -0.42 0.69 16 42 H 0.18 0.67 8.06 -52.49 -0.42 0.25 16 LS Contribution 339.41 15.07 5.11 5.11 Total: -1.00 -33.61 339.41 -8.30 -41.92 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -6.58 Total: 1.33 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: -2.21 Total: -11.86 kcal Atomic # 7 Polarization: -44.41 SS G_CDS: 0.32 Total: -44.09 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.07 Total: -9.24 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.61 -8.30 -41.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603159405.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.303 kcal (2) G-P(sol) polarization free energy of solvation -33.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds