Wall clock time and date at job start Tue Mar 31 2020 02:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47010 * 120.00125 * 2 1 3 5 5 H 1.08995 * 109.47098 * 299.99700 * 4 2 1 6 6 N 1.46498 * 109.47257 * 179.97438 * 4 2 1 7 7 C 1.34777 * 119.99828 * 84.72116 * 6 4 2 8 8 O 1.21283 * 120.00222 * 0.28168 * 7 6 4 9 9 C 1.50703 * 120.00290 * 180.27728 * 7 6 4 10 10 C 1.52990 * 109.47398 * 180.02562 * 9 7 6 11 11 C 1.52995 * 109.47353 * 179.97438 * 10 9 7 12 12 C 1.50702 * 109.47846 * 180.02562 * 11 10 9 13 13 H 1.08010 * 119.99192 * 0.02562 * 12 11 10 14 14 C 1.37869 * 120.00564 * 180.02562 * 12 11 10 15 15 N 1.31515 * 119.99836 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00096 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.46726 * 60.00418 * 16 14 12 18 18 H 1.48496 * 109.47105 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47194 * 300.00214 * 16 14 12 20 20 C 1.50696 * 109.47087 * 59.99796 * 4 2 1 21 21 N 1.30503 * 125.65424 * 305.02355 * 20 4 2 22 22 C 1.34125 * 109.25633 * 179.97438 * 21 20 4 23 23 C 1.34666 * 108.02389 * 0.02562 * 22 21 20 24 24 N 1.35048 * 125.64811 * 124.71739 * 20 4 2 25 25 H 0.96998 * 126.39528 * 0.02562 * 24 20 4 26 26 H 1.09003 * 109.47062 * 300.00363 * 1 2 3 27 27 H 1.08996 * 109.47077 * 59.99864 * 1 2 3 28 28 H 1.08996 * 109.47248 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.46945 * 239.99919 * 2 1 3 30 30 H 1.09003 * 109.47146 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.47253 * 300.00028 * 3 2 1 32 32 H 1.08995 * 109.47275 * 60.00121 * 3 2 1 33 33 H 0.97001 * 120.00384 * 265.00562 * 6 4 2 34 34 H 1.08998 * 109.46954 * 300.00581 * 9 7 6 35 35 H 1.09002 * 109.46946 * 59.99717 * 9 7 6 36 36 H 1.08998 * 109.47508 * 300.00200 * 10 9 7 37 37 H 1.09011 * 109.47182 * 60.00188 * 10 9 7 38 38 H 1.08999 * 109.47616 * 300.00389 * 11 10 9 39 39 H 1.09003 * 109.47280 * 60.00024 * 11 10 9 40 40 H 0.97000 * 119.99614 * 179.97438 * 15 14 12 41 41 H 1.08008 * 125.98454 * 180.02562 * 22 21 20 42 42 H 1.07996 * 126.59012 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2075 2.1392 6 7 3.5050 -0.7218 1.2490 7 6 4.1793 0.3382 1.7369 8 8 3.5734 1.2904 2.1808 9 6 5.6863 0.3404 1.7309 10 6 6.1969 1.6496 2.3357 11 6 7.7268 1.6516 2.3302 12 6 8.2298 2.9410 2.9265 13 1 7.5282 3.6846 3.2750 14 6 9.5854 3.1714 3.0272 15 7 10.4396 2.2661 2.6025 16 14 10.2088 4.7694 3.7671 17 1 9.7193 4.8923 5.1637 18 1 11.6937 4.7718 3.7605 19 1 9.7089 5.9146 2.9646 20 6 1.5376 -2.1420 1.2492 21 7 0.2881 -2.5071 1.1563 22 6 0.2148 -3.8459 1.1889 23 6 1.4663 -4.3290 1.3070 24 7 2.3064 -3.2487 1.3394 25 1 3.2730 -3.2733 1.4157 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9563 0.8899 33 1 3.9897 -1.4834 0.8939 34 1 6.0532 -0.4994 2.3210 35 1 6.0457 0.2486 0.7059 36 1 5.8300 2.4897 1.7460 37 1 5.8375 1.7409 3.3608 38 1 8.0934 0.8116 2.9202 39 1 8.0866 1.5601 1.3054 40 1 11.3933 2.4284 2.6730 41 1 -0.6895 -4.4336 1.1306 42 1 1.7525 -5.3689 1.3612 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603159405.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:28:15 Heat of formation + Delta-G solvation = -19.217079 kcal Electronic energy + Delta-G solvation = -21660.170010 eV Core-core repulsion = 18446.699626 eV Total energy + Delta-G solvation = -3213.470384 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.16967 -41.02505 -37.67505 -36.06166 -34.79584 -33.96998 -33.21876 -31.09972 -29.74496 -27.78639 -27.23476 -25.45112 -22.80712 -22.20999 -21.98068 -21.24467 -21.04345 -19.47045 -18.45858 -17.72390 -17.11478 -16.95477 -16.47062 -16.15398 -15.60488 -15.32582 -15.03905 -14.73262 -14.43150 -14.24486 -14.18446 -13.78923 -13.67062 -13.36405 -13.11716 -12.91456 -12.58953 -12.53028 -12.48366 -12.41841 -11.98018 -11.77569 -11.53000 -11.43805 -11.26534 -11.05105 -10.78156 -10.66495 -10.53699 -10.27217 -9.33244 -8.20285 -6.29781 1.06482 1.39747 1.42115 1.50168 1.62613 1.87673 2.11480 2.18069 2.41714 3.13029 3.37489 3.78593 3.83492 4.00219 4.14709 4.21916 4.28446 4.37678 4.44288 4.54635 4.69970 4.72856 4.81295 4.83949 4.97397 4.98850 5.07308 5.11788 5.14701 5.20132 5.21210 5.31019 5.48253 5.55075 5.56296 5.77129 5.88095 5.89122 6.27477 6.34974 6.46193 6.85898 7.07328 7.21831 7.38928 8.90954 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.031156 B = 0.003085 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.484838 B = 9072.856829 C = 9714.216239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.086 4.086 3 C -0.135 4.135 4 C 0.243 3.757 5 H 0.087 0.913 6 N -0.721 5.721 7 C 0.524 3.476 8 O -0.560 6.560 9 C -0.130 4.130 10 C -0.082 4.082 11 C 0.026 3.974 12 C -0.548 4.548 13 H 0.051 0.949 14 C 0.004 3.996 15 N -0.929 5.929 16 Si 0.959 3.041 17 H -0.270 1.270 18 H -0.279 1.279 19 H -0.270 1.270 20 C 0.187 3.813 21 N -0.499 5.499 22 C -0.057 4.057 23 C -0.033 4.033 24 N -0.556 5.556 25 H 0.430 0.570 26 H 0.043 0.957 27 H 0.057 0.943 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.041 0.959 31 H 0.060 0.940 32 H 0.045 0.955 33 H 0.411 0.589 34 H 0.111 0.889 35 H 0.109 0.891 36 H 0.041 0.959 37 H 0.041 0.959 38 H 0.001 0.999 39 H 0.001 0.999 40 H 0.264 0.736 41 H 0.189 0.811 42 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.900 -15.994 -6.400 24.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.106 4.106 3 C -0.192 4.192 4 C 0.136 3.864 5 H 0.105 0.895 6 N -0.376 5.376 7 C 0.312 3.688 8 O -0.438 6.438 9 C -0.169 4.169 10 C -0.120 4.120 11 C -0.011 4.011 12 C -0.586 4.586 13 H 0.069 0.931 14 C -0.194 4.194 15 N -0.569 5.569 16 Si 0.783 3.217 17 H -0.195 1.195 18 H -0.204 1.204 19 H -0.195 1.195 20 C -0.077 4.077 21 N -0.220 5.220 22 C -0.205 4.205 23 C -0.167 4.167 24 N -0.161 5.161 25 H 0.271 0.729 26 H 0.062 0.938 27 H 0.076 0.924 28 H 0.107 0.893 29 H 0.094 0.906 30 H 0.060 0.940 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.247 0.753 34 H 0.129 0.871 35 H 0.127 0.873 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.020 0.980 39 H 0.019 0.981 40 H 0.073 0.927 41 H 0.206 0.794 42 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -18.851 -14.838 -6.154 24.767 hybrid contribution 1.868 -0.010 0.406 1.912 sum -16.983 -14.848 -5.748 23.279 Atomic orbital electron populations 1.21990 0.93227 1.04439 1.01073 1.21328 0.97441 0.95570 0.96265 1.21825 1.00319 0.95720 1.01366 1.19077 0.79715 0.87315 1.00303 0.89478 1.45825 1.05852 1.21258 1.64632 1.20959 0.90688 0.81520 0.75628 1.90717 1.70885 1.35473 1.46684 1.21693 0.89643 1.00809 1.04796 1.21154 0.95932 0.95594 0.99359 1.19010 0.91207 0.95369 0.95484 1.21684 0.92147 1.04141 1.40631 0.93089 1.25873 0.97255 1.00320 0.95935 1.70051 1.02429 1.36210 1.48242 0.85598 0.77167 0.79711 0.79186 1.19471 1.20413 1.19485 1.22899 0.87491 0.89877 1.07422 1.70074 1.17657 1.14247 1.20031 1.22893 0.98759 0.90237 1.08565 1.23405 0.90379 0.94274 1.08665 1.43242 1.11269 1.06099 1.55457 0.72928 0.93785 0.92431 0.89265 0.90571 0.94034 0.92149 0.93573 0.75264 0.87115 0.87263 0.93988 0.94032 0.98043 0.98070 0.92682 0.79446 0.76759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.20 8.79 71.98 0.63 -2.57 16 2 C -0.09 -1.87 2.68 -10.79 -0.03 -1.90 16 3 C -0.13 -3.48 7.71 71.98 0.56 -2.92 16 4 C 0.24 5.32 2.39 44.24 0.11 5.42 16 5 H 0.09 2.39 7.58 -2.39 -0.02 2.38 16 6 N -0.72 -14.22 4.87 -446.11 -2.17 -16.39 16 7 C 0.52 14.76 6.17 87.66 0.54 15.30 16 8 O -0.56 -20.50 13.09 -3.04 -0.04 -20.54 16 9 C -0.13 -3.79 5.70 29.85 0.17 -3.62 16 10 C -0.08 -3.44 4.44 30.59 0.14 -3.30 16 11 C 0.03 1.36 4.97 29.85 0.15 1.51 16 12 C -0.55 -31.78 9.11 25.60 0.23 -31.55 16 13 H 0.05 2.92 7.74 -2.91 -0.02 2.90 16 14 C 0.00 0.24 5.46 84.65 0.46 0.70 16 15 N -0.93 -55.77 13.29 21.44 0.28 -55.48 16 16 Si 0.96 44.81 29.54 68.60 2.03 46.83 16 17 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 18 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 19 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 20 C 0.19 3.64 7.12 138.12 0.98 4.62 16 21 N -0.50 -10.78 8.32 -188.13 -1.57 -12.35 16 22 C -0.06 -0.91 11.87 83.52 0.99 0.08 16 23 C -0.03 -0.36 12.04 83.09 1.00 0.64 16 24 N -0.56 -7.08 5.88 -186.27 -1.09 -8.17 16 25 H 0.43 3.13 7.70 -92.71 -0.71 2.42 16 26 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.09 2.00 5.30 -2.39 -0.01 1.99 16 29 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.04 1.18 5.76 -2.39 -0.01 1.17 16 31 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.05 1.37 7.53 -2.39 -0.02 1.35 16 33 H 0.41 5.12 7.28 -92.71 -0.68 4.45 16 34 H 0.11 2.76 8.14 -2.39 -0.02 2.74 16 35 H 0.11 2.79 8.14 -2.39 -0.02 2.77 16 36 H 0.04 1.85 8.10 -2.39 -0.02 1.83 16 37 H 0.04 1.83 8.10 -2.38 -0.02 1.81 16 38 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 39 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 40 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 41 H 0.19 2.08 8.06 -2.91 -0.02 2.06 16 42 H 0.22 0.62 8.06 -2.91 -0.02 0.59 16 Total: -1.00 -74.01 339.41 3.01 -71.00 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -0.36 Total: 12.68 kcal Atomic # 6 Polarization: -23.51 SS G_CDS: 5.93 Total: -17.58 kcal Atomic # 7 Polarization: -87.85 SS G_CDS: -4.55 Total: -92.39 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: -0.04 Total: -20.54 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Total: -74.01 3.01 -71.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603159405.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.783 kcal (2) G-P(sol) polarization free energy of solvation -74.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds