Wall clock time and date at job start Tue Mar 31 2020 01:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47194 * 2 1 4 4 C 1.53001 * 109.47328 * 300.00872 * 3 2 1 5 5 C 1.53002 * 109.46720 * 60.00247 * 3 2 1 6 6 C 1.50692 * 109.47284 * 180.02562 * 3 2 1 7 7 N 1.29044 * 125.12042 * 60.02589 * 6 3 2 8 8 N 1.40284 * 108.10150 * 179.97438 * 7 6 3 9 9 H 0.97006 * 126.77383 * 179.97438 * 8 7 6 10 10 C 1.37011 * 106.45694 * 0.02562 * 8 7 6 11 11 N 1.30681 * 126.58475 * 179.97438 * 10 8 7 12 12 C 1.46500 * 120.00029 * 354.80586 * 11 10 8 13 13 C 1.53000 * 109.46918 * 117.00503 * 12 11 10 14 14 C 1.50698 * 115.55275 * 39.74295 * 13 12 11 15 15 H 1.08006 * 119.99384 * 264.93503 * 14 13 12 16 16 C 1.37878 * 120.00397 * 84.92843 * 14 13 12 17 17 N 1.31513 * 119.99673 * 184.68983 * 16 14 13 18 18 Si 1.86793 * 119.99815 * 4.68608 * 16 14 13 19 19 H 1.48507 * 109.47036 * 94.49536 * 18 16 14 20 20 H 1.48501 * 109.47416 * 214.49050 * 18 16 14 21 21 H 1.48496 * 109.47586 * 334.49464 * 18 16 14 22 22 C 1.52997 * 117.50092 * 254.02778 * 13 12 11 23 23 C 1.53003 * 60.00202 * 252.51251 * 22 13 12 24 24 O 1.34843 * 125.11867 * 239.72376 * 6 3 2 25 25 H 1.08993 * 109.47696 * 59.99511 * 1 2 3 26 26 H 1.09007 * 109.46941 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46980 * 299.99111 * 1 2 3 28 28 H 1.08994 * 109.47235 * 120.00748 * 2 1 3 29 29 H 1.09007 * 109.46654 * 240.00353 * 2 1 3 30 30 H 1.08992 * 109.47513 * 59.99270 * 4 3 2 31 31 H 1.09002 * 109.47092 * 179.97438 * 4 3 2 32 32 H 1.09008 * 109.46881 * 299.99283 * 4 3 2 33 33 H 1.09004 * 109.46908 * 59.99840 * 5 3 2 34 34 H 1.08994 * 109.47039 * 180.02562 * 5 3 2 35 35 H 1.09005 * 109.47352 * 300.00181 * 5 3 2 36 36 H 1.09002 * 109.47402 * 237.00385 * 12 11 10 37 37 H 1.08992 * 109.47328 * 357.00543 * 12 11 10 38 38 H 0.97007 * 119.99397 * 180.02562 * 17 16 14 39 39 H 1.09005 * 117.49829 * 0.02562 * 22 13 12 40 40 H 1.08996 * 117.49742 * 145.01996 * 22 13 12 41 41 H 1.09000 * 117.49409 * 252.50740 * 23 22 13 42 42 H 1.08997 * 117.51754 * 107.47873 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5299 2.1638 -1.2491 5 6 1.5300 2.1636 1.2493 6 6 3.5469 1.4425 -0.0006 7 7 4.2890 0.9153 -0.9154 8 7 5.6305 1.1209 -0.5605 9 1 6.4130 0.8345 -1.0572 10 6 5.6176 1.8050 0.6265 11 7 6.6595 2.1991 1.3098 12 6 8.0062 1.8177 0.8772 13 6 8.8002 3.0741 0.5142 14 6 8.5906 4.2599 1.4203 15 1 7.8658 5.0170 1.1597 16 6 9.3240 4.3782 2.5818 17 7 9.0770 5.3628 3.4179 18 14 10.6682 3.1399 2.9678 19 1 11.9749 3.6646 2.4959 20 1 10.7263 2.9133 4.4343 21 1 10.3723 1.8574 2.2801 22 6 9.0414 3.3530 -0.9707 23 6 10.1951 2.8800 -0.0840 24 8 4.3231 1.9984 0.9516 25 1 -0.3634 0.5139 -0.8898 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 0.4400 2.1638 -1.2491 31 1 1.8929 3.1916 -1.2489 32 1 1.8932 1.6501 -2.1392 33 1 1.8934 1.6497 2.1393 34 1 1.8930 3.1914 1.2491 35 1 0.4400 2.1636 1.2494 36 1 8.5116 1.2894 1.6856 37 1 7.9371 1.1671 0.0054 38 1 9.5933 5.4462 4.2350 39 1 8.6340 2.6416 -1.6891 40 1 9.0482 4.3944 -1.2925 41 1 10.9609 3.6103 0.1775 42 1 10.5471 1.8573 -0.2186 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603368399.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:30:27 Heat of formation + Delta-G solvation = 80.875320 kcal Electronic energy + Delta-G solvation = -22185.665943 eV Core-core repulsion = 18976.535891 eV Total energy + Delta-G solvation = -3209.130052 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.64758 -38.07185 -37.27855 -35.25332 -34.11325 -31.92280 -30.87727 -29.48649 -27.62409 -26.54971 -25.19762 -24.95248 -22.84552 -21.67998 -21.35715 -19.62868 -18.85506 -17.95581 -16.66930 -16.30410 -15.86052 -15.17872 -15.00032 -14.77227 -14.49191 -14.31605 -13.86018 -13.36549 -13.01920 -12.68242 -12.63884 -12.46849 -12.39803 -12.09707 -11.94525 -11.74760 -11.50798 -11.42750 -11.22818 -11.05050 -10.85977 -10.74264 -10.50838 -10.46156 -10.07070 -9.50140 -9.24527 -8.68124 -8.51277 -8.33987 -7.47301 -5.93809 -3.92536 1.86145 2.36781 2.81482 2.88211 3.37222 3.46496 3.49139 4.19900 4.44268 4.51192 4.55441 4.75098 4.89606 4.99608 5.11052 5.28275 5.30243 5.36441 5.45213 5.51372 5.60914 5.64290 5.68669 5.69565 5.74830 5.86889 5.89054 5.92429 6.01469 6.05900 6.09217 6.15882 6.27878 6.41407 6.61015 6.68549 6.91490 7.07586 7.15825 7.84532 7.98383 8.54969 8.70072 9.09653 9.69436 11.19255 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.028881 B = 0.004151 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.271880 B = 6743.998623 C = 7116.396208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.112 4.112 3 C 0.034 3.966 4 C -0.144 4.144 5 C -0.150 4.150 6 C 0.240 3.760 7 N -0.275 5.275 8 N -0.600 5.600 9 H 0.449 0.551 10 C 0.469 3.531 11 N -0.495 5.495 12 C 0.109 3.891 13 C 0.006 3.994 14 C -0.458 4.458 15 H 0.074 0.926 16 C 0.078 3.922 17 N -0.900 5.900 18 Si 0.879 3.121 19 H -0.283 1.283 20 H -0.295 1.295 21 H -0.260 1.260 22 C -0.186 4.186 23 C -0.197 4.197 24 O -0.237 6.237 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.010 0.990 38 H 0.262 0.738 39 H 0.065 0.935 40 H 0.086 0.914 41 H 0.089 0.911 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.919 -11.490 -8.739 21.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.150 4.150 3 C 0.032 3.968 4 C -0.201 4.201 5 C -0.207 4.207 6 C 0.010 3.990 7 N -0.103 5.103 8 N -0.351 5.351 9 H 0.297 0.703 10 C 0.157 3.843 11 N -0.238 5.238 12 C -0.020 4.020 13 C 0.005 3.995 14 C -0.495 4.495 15 H 0.092 0.908 16 C -0.123 4.123 17 N -0.538 5.538 18 Si 0.708 3.292 19 H -0.210 1.210 20 H -0.222 1.222 21 H -0.184 1.184 22 C -0.223 4.223 23 C -0.235 4.235 24 O -0.124 6.124 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.028 0.972 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.105 0.895 41 H 0.107 0.893 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -15.679 -11.287 -8.444 21.083 hybrid contribution 1.606 -0.788 -0.091 1.791 sum -14.072 -12.075 -8.534 20.412 Atomic orbital electron populations 1.21896 0.94543 1.02161 1.02519 1.21632 0.96669 0.93319 1.03416 1.19259 0.80307 0.98335 0.98946 1.22002 1.01833 1.00694 0.95616 1.21968 1.01660 1.01333 0.95770 1.26307 0.95933 0.92673 0.84040 1.76472 0.89842 1.21872 1.22090 1.47527 1.03873 1.60026 1.23671 0.70272 1.22382 0.85725 0.91578 0.84651 1.72862 0.95965 1.25458 1.29541 1.21683 0.87192 0.96028 0.97113 1.19503 0.92545 0.95240 0.92262 1.20003 1.21824 1.03819 1.03887 0.90785 1.24887 0.97047 0.94971 0.95395 1.69908 1.40737 1.31943 1.11194 0.86873 0.82372 0.83096 0.76865 1.20973 1.22163 1.18407 1.22891 1.04167 1.00610 0.94648 1.22990 0.93476 0.99987 1.07068 1.84893 1.13916 1.68959 1.44612 0.91991 0.92294 0.91925 0.91244 0.90648 0.90423 0.91740 0.91305 0.91373 0.91208 0.90698 0.90122 0.97159 0.92863 0.91616 0.89517 0.89265 0.91040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.21 37.16 0.34 -0.55 16 2 C -0.11 -0.91 4.97 -26.73 -0.13 -1.05 16 3 C 0.03 0.33 0.77 -155.66 -0.12 0.21 16 4 C -0.14 -1.20 8.10 37.16 0.30 -0.90 16 5 C -0.15 -1.39 7.64 37.16 0.28 -1.10 16 6 C 0.24 3.45 6.48 -13.45 -0.09 3.36 16 7 N -0.28 -4.14 12.62 32.45 0.41 -3.73 16 8 N -0.60 -9.96 7.25 29.59 0.21 -9.75 16 9 H 0.45 6.59 7.47 -182.45 -1.36 5.23 16 10 C 0.47 9.38 9.05 -88.40 -0.80 8.57 16 11 N -0.50 -11.57 9.96 -62.54 -0.62 -12.19 16 12 C 0.11 2.39 6.28 -4.04 -0.03 2.37 16 13 C 0.01 0.14 1.19 -155.66 -0.19 -0.04 16 14 C -0.46 -13.32 8.75 -34.44 -0.30 -13.62 16 15 H 0.07 2.41 8.06 -52.48 -0.42 1.99 16 16 C 0.08 2.33 5.47 -17.82 -0.10 2.23 16 17 N -0.90 -28.45 13.96 55.43 0.77 -27.68 16 18 Si 0.88 22.37 25.18 -169.99 -4.28 18.09 16 19 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 20 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 21 H -0.26 -6.16 5.25 56.52 0.30 -5.86 16 22 C -0.19 -3.88 9.88 -26.73 -0.26 -4.14 16 23 C -0.20 -4.24 7.34 -26.73 -0.20 -4.43 16 24 O -0.24 -4.33 10.11 2.64 0.03 -4.30 16 25 H 0.06 0.31 6.43 -51.93 -0.33 -0.02 16 26 H 0.06 0.31 8.14 -51.92 -0.42 -0.11 16 27 H 0.06 0.33 6.43 -51.93 -0.33 0.00 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 0.46 6.43 -51.93 -0.33 0.13 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.49 6.43 -51.93 -0.33 0.16 16 36 H 0.08 1.82 6.65 -51.93 -0.35 1.48 16 37 H 0.01 0.19 6.04 -51.93 -0.31 -0.12 16 38 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 39 H 0.07 1.19 8.08 -51.93 -0.42 0.77 16 40 H 0.09 1.85 8.14 -51.93 -0.42 1.43 16 41 H 0.09 2.00 7.12 -51.93 -0.37 1.63 16 42 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 334.37 15.07 5.04 5.04 Total: -1.00 -33.75 334.37 -7.34 -41.08 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -7.61 Total: 2.53 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: -1.28 Total: -9.09 kcal Atomic # 7 Polarization: -54.12 SS G_CDS: 0.77 Total: -53.35 kcal Atomic # 8 Polarization: -4.33 SS G_CDS: 0.03 Total: -4.30 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.28 Total: 18.09 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.75 -7.34 -41.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603368399.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.959 kcal (2) G-P(sol) polarization free energy of solvation -33.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds