Wall clock time and date at job start Tue Mar 31 2020 01:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47194 * 2 1 4 4 C 1.53001 * 109.47328 * 300.00872 * 3 2 1 5 5 C 1.53002 * 109.46720 * 60.00247 * 3 2 1 6 6 C 1.50692 * 109.47284 * 180.02562 * 3 2 1 7 7 N 1.29044 * 125.12042 * 60.02589 * 6 3 2 8 8 N 1.40284 * 108.10150 * 179.97438 * 7 6 3 9 9 H 0.97006 * 126.77383 * 179.97438 * 8 7 6 10 10 C 1.37011 * 106.45694 * 0.02562 * 8 7 6 11 11 N 1.30681 * 126.58475 * 179.97438 * 10 8 7 12 12 C 1.46500 * 120.00029 * 354.80586 * 11 10 8 13 13 C 1.53000 * 109.46918 * 117.00503 * 12 11 10 14 14 C 1.50698 * 115.55275 * 39.74295 * 13 12 11 15 15 H 1.08006 * 119.99384 * 264.93503 * 14 13 12 16 16 C 1.37878 * 120.00397 * 84.92843 * 14 13 12 17 17 N 1.31513 * 119.99673 * 184.68983 * 16 14 13 18 18 Si 1.86793 * 119.99815 * 4.68608 * 16 14 13 19 19 H 1.48507 * 109.47036 * 94.49536 * 18 16 14 20 20 H 1.48501 * 109.47416 * 214.49050 * 18 16 14 21 21 H 1.48496 * 109.47586 * 334.49464 * 18 16 14 22 22 C 1.52997 * 117.50092 * 254.02778 * 13 12 11 23 23 C 1.53003 * 60.00202 * 252.51251 * 22 13 12 24 24 O 1.34843 * 125.11867 * 239.72376 * 6 3 2 25 25 H 1.08993 * 109.47696 * 59.99511 * 1 2 3 26 26 H 1.09007 * 109.46941 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46980 * 299.99111 * 1 2 3 28 28 H 1.08994 * 109.47235 * 120.00748 * 2 1 3 29 29 H 1.09007 * 109.46654 * 240.00353 * 2 1 3 30 30 H 1.08992 * 109.47513 * 59.99270 * 4 3 2 31 31 H 1.09002 * 109.47092 * 179.97438 * 4 3 2 32 32 H 1.09008 * 109.46881 * 299.99283 * 4 3 2 33 33 H 1.09004 * 109.46908 * 59.99840 * 5 3 2 34 34 H 1.08994 * 109.47039 * 180.02562 * 5 3 2 35 35 H 1.09005 * 109.47352 * 300.00181 * 5 3 2 36 36 H 1.09002 * 109.47402 * 237.00385 * 12 11 10 37 37 H 1.08992 * 109.47328 * 357.00543 * 12 11 10 38 38 H 0.97007 * 119.99397 * 180.02562 * 17 16 14 39 39 H 1.09005 * 117.49829 * 0.02562 * 22 13 12 40 40 H 1.08996 * 117.49742 * 145.01996 * 22 13 12 41 41 H 1.09000 * 117.49409 * 252.50740 * 23 22 13 42 42 H 1.08997 * 117.51754 * 107.47873 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5299 2.1638 -1.2491 5 6 1.5300 2.1636 1.2493 6 6 3.5469 1.4425 -0.0006 7 7 4.2890 0.9153 -0.9154 8 7 5.6305 1.1209 -0.5605 9 1 6.4130 0.8345 -1.0572 10 6 5.6176 1.8050 0.6265 11 7 6.6595 2.1991 1.3098 12 6 8.0062 1.8177 0.8772 13 6 8.8002 3.0741 0.5142 14 6 8.5906 4.2599 1.4203 15 1 7.8658 5.0170 1.1597 16 6 9.3240 4.3782 2.5818 17 7 9.0770 5.3628 3.4179 18 14 10.6682 3.1399 2.9678 19 1 11.9749 3.6646 2.4959 20 1 10.7263 2.9133 4.4343 21 1 10.3723 1.8574 2.2801 22 6 9.0414 3.3530 -0.9707 23 6 10.1951 2.8800 -0.0840 24 8 4.3231 1.9984 0.9516 25 1 -0.3634 0.5139 -0.8898 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 0.4400 2.1638 -1.2491 31 1 1.8929 3.1916 -1.2489 32 1 1.8932 1.6501 -2.1392 33 1 1.8934 1.6497 2.1393 34 1 1.8930 3.1914 1.2491 35 1 0.4400 2.1636 1.2494 36 1 8.5116 1.2894 1.6856 37 1 7.9371 1.1671 0.0054 38 1 9.5933 5.4462 4.2350 39 1 8.6340 2.6416 -1.6891 40 1 9.0482 4.3944 -1.2925 41 1 10.9609 3.6103 0.1775 42 1 10.5471 1.8573 -0.2186 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603368399.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:30:26 Heat of formation + Delta-G solvation = 53.395211 kcal Electronic energy + Delta-G solvation = -22186.857570 eV Core-core repulsion = 18976.535891 eV Total energy + Delta-G solvation = -3210.321679 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.01447 -39.21659 -38.69696 -36.69234 -35.59499 -34.15516 -31.76936 -30.55586 -28.55277 -28.11140 -27.18773 -25.77785 -24.00321 -23.35592 -22.78704 -20.89527 -20.55382 -19.10844 -18.32694 -18.00039 -17.01404 -16.75009 -16.36837 -16.22798 -15.61403 -15.52752 -15.11674 -14.85033 -14.50645 -14.40550 -13.94644 -13.42680 -13.26651 -13.05453 -13.03030 -12.91545 -12.80331 -12.72355 -12.36658 -12.25094 -12.17507 -12.12185 -11.93458 -11.62069 -11.49429 -11.33539 -11.09461 -10.62604 -10.31245 -10.23138 -8.98561 -8.20966 -6.24054 0.67023 0.99675 1.28526 1.36534 1.39265 1.51555 1.66105 2.42750 3.00238 3.15214 3.20034 3.57674 3.77139 3.94938 3.96129 4.08095 4.22827 4.32567 4.36967 4.46533 4.50473 4.60075 4.62572 4.74037 4.77561 4.79230 4.90013 4.93683 4.95362 5.00214 5.10445 5.16627 5.19180 5.25142 5.28932 5.41984 5.44092 5.58534 5.70135 5.76251 6.34644 6.65074 6.76627 7.09888 7.41629 8.96714 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.028881 B = 0.004151 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.271880 B = 6743.998623 C = 7116.396208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.108 4.108 3 C 0.032 3.968 4 C -0.141 4.141 5 C -0.149 4.149 6 C 0.242 3.758 7 N -0.276 5.276 8 N -0.590 5.590 9 H 0.458 0.542 10 C 0.478 3.522 11 N -0.561 5.561 12 C 0.117 3.883 13 C -0.030 4.030 14 C -0.453 4.453 15 H 0.013 0.987 16 C 0.015 3.985 17 N -0.957 5.957 18 Si 0.944 3.056 19 H -0.271 1.271 20 H -0.302 1.302 21 H -0.227 1.227 22 C -0.170 4.170 23 C -0.183 4.183 24 O -0.254 6.254 25 H 0.074 0.926 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.109 0.891 31 H 0.051 0.949 32 H 0.067 0.933 33 H 0.056 0.944 34 H 0.051 0.949 35 H 0.108 0.892 36 H 0.071 0.929 37 H 0.048 0.952 38 H 0.261 0.739 39 H 0.103 0.897 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.692 -14.378 -10.716 24.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.146 4.146 3 C 0.029 3.971 4 C -0.198 4.198 5 C -0.207 4.207 6 C 0.014 3.986 7 N -0.103 5.103 8 N -0.342 5.342 9 H 0.308 0.692 10 C 0.165 3.835 11 N -0.307 5.307 12 C -0.012 4.012 13 C -0.031 4.031 14 C -0.491 4.491 15 H 0.032 0.968 16 C -0.181 4.181 17 N -0.598 5.598 18 Si 0.768 3.232 19 H -0.196 1.196 20 H -0.229 1.229 21 H -0.149 1.149 22 C -0.207 4.207 23 C -0.221 4.221 24 O -0.142 6.142 25 H 0.093 0.907 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.127 0.873 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.126 0.874 36 H 0.089 0.911 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.122 0.878 40 H 0.090 0.910 41 H 0.095 0.905 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -16.469 -14.208 -10.490 24.149 hybrid contribution 1.616 0.178 0.439 1.684 sum -14.854 -14.031 -10.051 22.771 Atomic orbital electron populations 1.21899 0.92274 1.03114 1.03468 1.21630 0.98500 0.91536 1.02931 1.19673 0.77305 1.00050 1.00035 1.22036 1.03773 0.99561 0.94480 1.21999 1.03718 0.99932 0.95025 1.27513 0.97488 0.91025 0.82590 1.76526 0.88892 1.22668 1.22184 1.47471 1.05026 1.59039 1.22617 0.69162 1.22304 0.85804 0.90465 0.84950 1.72760 0.97195 1.28588 1.32149 1.21483 0.86385 0.95129 0.98165 1.19431 0.95646 0.94630 0.93383 1.20100 1.19660 1.04400 1.04958 0.96826 1.25823 0.99926 0.97178 0.95182 1.70086 1.42796 1.34793 1.12148 0.85837 0.79138 0.81779 0.76401 1.19644 1.22941 1.14917 1.22926 1.03370 1.00943 0.93496 1.23045 0.91899 1.01759 1.05364 1.84907 1.13896 1.69311 1.46082 0.90735 0.91442 0.91230 0.92068 0.90865 0.87263 0.92974 0.91391 0.92481 0.92967 0.87390 0.91098 0.93369 0.92985 0.87836 0.90984 0.90534 0.87254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.21 71.98 0.66 -0.58 16 2 C -0.11 -1.51 4.97 30.59 0.15 -1.36 16 3 C 0.03 0.57 0.77 -52.93 -0.04 0.53 16 4 C -0.14 -2.03 8.10 71.98 0.58 -1.45 16 5 C -0.15 -2.59 7.64 71.98 0.55 -2.04 16 6 C 0.24 6.77 6.48 88.52 0.57 7.34 16 7 N -0.28 -7.88 12.62 -166.15 -2.10 -9.98 16 8 N -0.59 -18.67 7.25 -171.05 -1.24 -19.91 16 9 H 0.46 12.24 7.47 -213.19 -1.59 10.65 16 10 C 0.48 19.03 9.05 179.57 1.63 20.65 16 11 N -0.56 -26.50 9.96 -465.87 -4.64 -31.14 16 12 C 0.12 4.98 6.28 86.38 0.54 5.52 16 13 C -0.03 -1.39 1.19 -52.93 -0.06 -1.45 16 14 C -0.45 -27.43 8.75 25.60 0.22 -27.21 16 15 H 0.01 0.95 8.06 -2.91 -0.02 0.92 16 16 C 0.01 0.89 5.47 84.65 0.46 1.36 16 17 N -0.96 -63.65 13.96 21.45 0.30 -63.35 16 18 Si 0.94 46.39 25.18 68.60 1.73 48.11 16 19 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 20 H -0.30 -15.09 7.11 99.48 0.71 -14.38 16 21 H -0.23 -9.84 5.25 99.48 0.52 -9.31 16 22 C -0.17 -6.73 9.88 30.59 0.30 -6.43 16 23 C -0.18 -7.29 7.34 30.60 0.22 -7.06 16 24 O -0.25 -9.40 10.11 -13.46 -0.14 -9.53 16 25 H 0.07 0.45 6.43 -2.39 -0.02 0.43 16 26 H 0.07 0.49 8.14 -2.38 -0.02 0.47 16 27 H 0.07 0.50 6.43 -2.39 -0.02 0.48 16 28 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 30 H 0.11 0.90 6.43 -2.39 -0.02 0.88 16 31 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 33 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.11 1.13 6.43 -2.38 -0.02 1.11 16 36 H 0.07 3.07 6.65 -2.39 -0.02 3.06 16 37 H 0.05 1.62 6.04 -2.39 -0.01 1.61 16 38 H 0.26 16.31 8.31 -92.70 -0.77 15.54 16 39 H 0.10 3.30 8.08 -2.38 -0.02 3.28 16 40 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 41 H 0.08 3.25 7.12 -2.39 -0.02 3.23 16 42 H 0.11 3.57 8.14 -2.39 -0.02 3.55 16 Total: -1.00 -78.35 334.37 -1.04 -79.39 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: -0.75 Total: 18.59 kcal Atomic # 6 Polarization: -17.97 SS G_CDS: 5.80 Total: -12.17 kcal Atomic # 7 Polarization: -116.71 SS G_CDS: -7.68 Total: -124.39 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: -0.14 Total: -9.53 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 1.73 Total: 48.11 kcal Total: -78.35 -1.04 -79.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603368399.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.790 kcal (2) G-P(sol) polarization free energy of solvation -78.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds