Wall clock time and date at job start Tue Mar 31 2020 02:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47023 * 2 1 4 4 C 1.53004 * 109.47023 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.46846 * 305.00453 * 4 3 2 6 6 C 1.52998 * 109.46876 * 65.00137 * 4 3 2 7 7 C 1.50700 * 109.47208 * 185.00002 * 4 3 2 8 8 O 1.21293 * 119.99810 * 359.97438 * 7 4 3 9 9 N 1.34777 * 119.99675 * 180.27843 * 7 4 3 10 10 C 1.39479 * 119.99460 * 179.72541 * 9 7 4 11 11 C 1.36109 * 126.21731 * 359.68718 * 10 9 7 12 12 C 1.39759 * 107.82509 * 179.90216 * 11 10 9 13 13 C 1.50698 * 125.83854 * 180.13820 * 12 11 10 14 14 N 1.30848 * 108.32513 * 0.36377 * 12 11 10 15 15 N 1.35264 * 126.20946 * 179.97438 * 10 9 7 16 16 C 1.46490 * 126.04941 * 359.96399 * 15 10 9 17 17 C 1.50701 * 109.47389 * 90.00205 * 16 15 10 18 18 H 1.08004 * 119.99481 * 359.97438 * 17 16 15 19 19 C 1.37869 * 120.00374 * 179.97438 * 17 16 15 20 20 N 1.31513 * 120.00321 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99952 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47357 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47068 * 120.00183 * 21 19 17 24 24 H 1.48504 * 109.47080 * 239.99812 * 21 19 17 25 25 H 1.09004 * 109.46938 * 300.00365 * 1 2 3 26 26 H 1.09005 * 109.47154 * 59.99567 * 1 2 3 27 27 H 1.09000 * 109.47275 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46700 * 239.99985 * 2 1 3 29 29 H 1.08991 * 109.47047 * 120.00280 * 2 1 3 30 30 H 1.08998 * 109.47395 * 60.00411 * 3 2 1 31 31 H 1.09000 * 109.47321 * 299.99781 * 3 2 1 32 32 H 1.09004 * 109.47239 * 180.02562 * 6 4 3 33 33 H 1.09005 * 109.47323 * 300.00275 * 6 4 3 34 34 H 1.09006 * 109.47458 * 59.99925 * 6 4 3 35 35 H 0.97001 * 120.00485 * 359.71840 * 9 7 4 36 36 H 1.07998 * 126.08821 * 0.02562 * 11 10 9 37 37 H 1.08999 * 109.47079 * 270.23812 * 13 12 11 38 38 H 1.08999 * 109.46752 * 30.24109 * 13 12 11 39 39 H 1.08999 * 109.47097 * 150.23376 * 13 12 11 40 40 H 1.09001 * 109.47419 * 209.99907 * 16 15 10 41 41 H 1.08995 * 109.47463 * 329.99962 * 16 15 10 42 42 H 0.96997 * 120.00803 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8531 0.8427 6 6 4.0805 0.8327 -1.3064 7 6 4.0724 2.8579 0.1245 8 8 3.2841 3.7764 0.2039 9 7 5.3974 3.1037 0.1408 10 6 5.8623 4.4142 0.2497 11 6 5.0949 5.5347 0.3405 12 6 5.9527 6.6341 0.4350 13 6 5.5296 8.0753 0.5567 14 7 7.1858 6.1984 0.3948 15 7 7.1576 4.8028 0.2786 16 6 8.3243 3.9203 0.2018 17 6 8.7206 3.7358 -1.2404 18 1 8.1592 4.2266 -2.0217 19 6 9.7998 2.9406 -1.5625 20 7 10.4832 2.3426 -0.6113 21 14 10.2906 2.7115 -3.3503 22 1 9.3680 3.4845 -4.2199 23 1 11.6799 3.1970 -3.5484 24 1 10.2145 1.2712 -3.7039 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.6768 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 5.1706 0.8322 -1.3058 33 1 3.7172 -0.1911 -1.3961 34 1 3.7175 1.4220 -2.1485 35 1 6.0278 2.3692 0.0770 36 1 4.0155 5.5681 0.3417 37 1 5.4250 8.5085 -0.4380 38 1 4.5748 8.1308 1.0795 39 1 6.2832 8.6291 1.1168 40 1 9.1532 4.3651 0.7523 41 1 8.0769 2.9522 0.6373 42 1 11.2427 1.7834 -0.8378 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609579989.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:31:31 Heat of formation + Delta-G solvation = 11.998589 kcal Electronic energy + Delta-G solvation = -21943.986205 eV Core-core repulsion = 18731.869434 eV Total energy + Delta-G solvation = -3212.116771 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.87736 -39.42215 -36.11015 -34.71225 -33.75917 -32.26037 -31.90506 -29.13253 -28.15809 -26.72580 -26.02710 -24.32082 -22.84757 -21.65006 -20.32518 -19.66436 -18.97265 -17.00171 -16.65724 -16.34130 -15.69388 -15.20869 -14.89971 -14.43785 -14.22270 -14.06128 -13.88326 -13.22552 -12.90048 -12.78457 -12.61434 -12.49361 -12.31856 -12.05011 -12.01305 -11.74743 -11.56638 -11.36195 -11.09547 -11.05238 -10.94109 -10.91352 -10.64389 -10.36203 -10.31023 -9.80356 -9.79025 -9.39541 -8.73494 -7.89510 -7.40786 -6.34224 -4.42583 2.31075 2.86820 3.13991 3.15428 3.23239 3.29469 3.63781 3.82058 4.23814 4.57425 4.61534 4.78157 4.99191 5.03173 5.08852 5.17127 5.37924 5.39167 5.54299 5.63724 5.66710 5.74029 5.75109 5.84037 5.99072 6.02094 6.05012 6.17747 6.19968 6.23152 6.26406 6.32264 6.47016 6.69784 6.84484 7.04969 7.54281 7.59546 7.66673 7.79478 7.94480 8.36121 8.63181 8.72408 9.25139 10.72939 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.012376 B = 0.005436 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.932366 B = 5149.568377 C = 6948.087045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.100 4.100 4 C -0.105 4.105 5 H 0.100 0.900 6 C -0.151 4.151 7 C 0.522 3.478 8 O -0.516 6.516 9 N -0.640 5.640 10 C 0.302 3.698 11 C -0.297 4.297 12 C 0.050 3.950 13 C -0.062 4.062 14 N -0.287 5.287 15 N -0.345 5.345 16 C 0.256 3.744 17 C -0.539 4.539 18 H 0.065 0.935 19 C 0.067 3.933 20 N -0.890 5.890 21 Si 0.905 3.095 22 H -0.271 1.271 23 H -0.280 1.280 24 H -0.280 1.280 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.416 0.584 36 H 0.161 0.839 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.056 0.944 41 H 0.044 0.956 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.827 -4.560 1.629 15.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.138 4.138 4 C -0.126 4.126 5 H 0.118 0.882 6 C -0.208 4.208 7 C 0.308 3.692 8 O -0.390 6.390 9 N -0.287 5.287 10 C 0.079 3.921 11 C -0.329 4.329 12 C -0.115 4.115 13 C -0.121 4.121 14 N -0.112 5.112 15 N -0.131 5.131 16 C 0.139 3.861 17 C -0.577 4.577 18 H 0.083 0.917 19 C -0.137 4.137 20 N -0.528 5.528 21 Si 0.732 3.268 22 H -0.196 1.196 23 H -0.205 1.205 24 H -0.206 1.206 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.252 0.748 36 H 0.178 0.822 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.061 0.939 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.902 -3.847 1.739 14.529 hybrid contribution 0.172 -0.972 -1.019 1.419 sum -13.730 -4.819 0.720 14.569 Atomic orbital electron populations 1.21760 0.95825 1.01381 1.01973 1.21601 0.95936 0.96655 1.02182 1.21444 0.91929 0.96711 1.03705 1.21315 0.97918 0.92359 1.01035 0.88186 1.21888 1.01933 1.01340 0.95634 1.20711 0.80880 0.91801 0.75771 1.90619 1.54947 1.45803 1.47669 1.42882 1.08245 1.06116 1.71443 1.17987 0.86257 0.85412 1.02418 1.21263 1.00806 0.88908 1.21902 1.22028 0.91019 0.96588 1.01835 1.20013 1.00938 0.89076 1.02026 1.77342 1.20129 0.88116 1.25640 1.49337 1.04276 1.04798 1.54664 1.19611 0.80944 0.86684 0.98908 1.21383 1.14700 1.30309 0.91353 0.91673 1.24931 0.95423 0.94919 0.98399 1.69922 1.19579 1.30912 1.32369 0.86313 0.78734 0.77962 0.83786 1.19558 1.20527 1.20618 0.92711 0.92700 0.92900 0.91628 0.91975 0.90978 0.91110 0.91522 0.91007 0.91826 0.74773 0.82198 0.91345 0.91180 0.91579 0.92580 0.93866 0.92224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.91 37.16 0.37 -0.80 16 2 C -0.13 -1.04 5.69 -26.73 -0.15 -1.19 16 3 C -0.10 -1.04 4.03 -26.73 -0.11 -1.15 16 4 C -0.10 -1.18 2.73 -91.77 -0.25 -1.43 16 5 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 6 C -0.15 -1.58 8.84 37.16 0.33 -1.25 16 7 C 0.52 8.27 7.12 -10.98 -0.08 8.19 16 8 O -0.52 -9.51 13.05 5.55 0.07 -9.44 16 9 N -0.64 -11.35 5.30 -11.46 -0.06 -11.41 16 10 C 0.30 6.50 7.66 -153.15 -1.17 5.32 16 11 C -0.30 -6.24 9.58 -39.78 -0.38 -6.62 16 12 C 0.05 1.03 7.21 -82.44 -0.59 0.44 16 13 C -0.06 -0.94 10.44 36.00 0.38 -0.57 16 14 N -0.29 -6.82 12.56 33.65 0.42 -6.39 16 15 N -0.35 -8.23 3.60 -61.58 -0.22 -8.45 16 16 C 0.26 6.45 6.01 -5.20 -0.03 6.42 16 17 C -0.54 -14.52 9.39 -34.44 -0.32 -14.84 16 18 H 0.07 1.84 7.81 -52.48 -0.41 1.43 16 19 C 0.07 1.77 5.46 -17.82 -0.10 1.68 16 20 N -0.89 -24.27 13.29 55.43 0.74 -23.53 16 21 Si 0.91 20.63 29.54 -169.99 -5.02 15.61 16 22 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.50 6.57 -51.93 -0.34 0.16 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.82 7.95 -51.93 -0.41 0.40 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.07 0.75 7.56 -51.93 -0.39 0.35 16 33 H 0.07 0.60 6.57 -51.93 -0.34 0.26 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.42 6.83 7.37 -40.82 -0.30 6.53 16 36 H 0.16 3.28 5.83 -52.49 -0.31 2.97 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.06 1.52 8.14 -51.93 -0.42 1.10 16 41 H 0.04 1.05 7.50 -51.93 -0.39 0.66 16 42 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 347.76 15.07 5.24 5.24 Total: -1.00 -31.01 347.76 -7.63 -38.64 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -6.68 Total: 5.54 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: -2.12 Total: -5.80 kcal Atomic # 7 Polarization: -50.66 SS G_CDS: 0.88 Total: -49.79 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.07 Total: -9.44 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.01 -7.63 -38.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609579989.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.637 kcal (2) G-P(sol) polarization free energy of solvation -31.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds