Wall clock time and date at job start Tue Mar 31 2020 02:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47023 * 2 1 4 4 C 1.53004 * 109.47023 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.46846 * 305.00453 * 4 3 2 6 6 C 1.52998 * 109.46876 * 65.00137 * 4 3 2 7 7 C 1.50700 * 109.47208 * 185.00002 * 4 3 2 8 8 O 1.21293 * 119.99810 * 359.97438 * 7 4 3 9 9 N 1.34777 * 119.99675 * 180.27843 * 7 4 3 10 10 C 1.39479 * 119.99460 * 179.72541 * 9 7 4 11 11 C 1.36109 * 126.21731 * 359.68718 * 10 9 7 12 12 C 1.39759 * 107.82509 * 179.90216 * 11 10 9 13 13 C 1.50698 * 125.83854 * 180.13820 * 12 11 10 14 14 N 1.30848 * 108.32513 * 0.36377 * 12 11 10 15 15 N 1.35264 * 126.20946 * 179.97438 * 10 9 7 16 16 C 1.46490 * 126.04941 * 359.96399 * 15 10 9 17 17 C 1.50701 * 109.47389 * 90.00205 * 16 15 10 18 18 H 1.08004 * 119.99481 * 359.97438 * 17 16 15 19 19 C 1.37869 * 120.00374 * 179.97438 * 17 16 15 20 20 N 1.31513 * 120.00321 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99952 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47357 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47068 * 120.00183 * 21 19 17 24 24 H 1.48504 * 109.47080 * 239.99812 * 21 19 17 25 25 H 1.09004 * 109.46938 * 300.00365 * 1 2 3 26 26 H 1.09005 * 109.47154 * 59.99567 * 1 2 3 27 27 H 1.09000 * 109.47275 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46700 * 239.99985 * 2 1 3 29 29 H 1.08991 * 109.47047 * 120.00280 * 2 1 3 30 30 H 1.08998 * 109.47395 * 60.00411 * 3 2 1 31 31 H 1.09000 * 109.47321 * 299.99781 * 3 2 1 32 32 H 1.09004 * 109.47239 * 180.02562 * 6 4 3 33 33 H 1.09005 * 109.47323 * 300.00275 * 6 4 3 34 34 H 1.09006 * 109.47458 * 59.99925 * 6 4 3 35 35 H 0.97001 * 120.00485 * 359.71840 * 9 7 4 36 36 H 1.07998 * 126.08821 * 0.02562 * 11 10 9 37 37 H 1.08999 * 109.47079 * 270.23812 * 13 12 11 38 38 H 1.08999 * 109.46752 * 30.24109 * 13 12 11 39 39 H 1.08999 * 109.47097 * 150.23376 * 13 12 11 40 40 H 1.09001 * 109.47419 * 209.99907 * 16 15 10 41 41 H 1.08995 * 109.47463 * 329.99962 * 16 15 10 42 42 H 0.96997 * 120.00803 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8531 0.8427 6 6 4.0805 0.8327 -1.3064 7 6 4.0724 2.8579 0.1245 8 8 3.2841 3.7764 0.2039 9 7 5.3974 3.1037 0.1408 10 6 5.8623 4.4142 0.2497 11 6 5.0949 5.5347 0.3405 12 6 5.9527 6.6341 0.4350 13 6 5.5296 8.0753 0.5567 14 7 7.1858 6.1984 0.3948 15 7 7.1576 4.8028 0.2786 16 6 8.3243 3.9203 0.2018 17 6 8.7206 3.7358 -1.2404 18 1 8.1592 4.2266 -2.0217 19 6 9.7998 2.9406 -1.5625 20 7 10.4832 2.3426 -0.6113 21 14 10.2906 2.7115 -3.3503 22 1 9.3680 3.4845 -4.2199 23 1 11.6799 3.1970 -3.5484 24 1 10.2145 1.2712 -3.7039 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.6768 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 5.1706 0.8322 -1.3058 33 1 3.7172 -0.1911 -1.3961 34 1 3.7175 1.4220 -2.1485 35 1 6.0278 2.3692 0.0770 36 1 4.0155 5.5681 0.3417 37 1 5.4250 8.5085 -0.4380 38 1 4.5748 8.1308 1.0795 39 1 6.2832 8.6291 1.1168 40 1 9.1532 4.3651 0.7523 41 1 8.0769 2.9522 0.6373 42 1 11.2427 1.7834 -0.8378 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609579989.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:31:31 Heat of formation + Delta-G solvation = -5.768148 kcal Electronic energy + Delta-G solvation = -21944.756628 eV Core-core repulsion = 18731.869434 eV Total energy + Delta-G solvation = -3212.887195 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.45750 -40.81528 -37.02443 -36.28025 -35.60761 -33.86787 -32.92218 -30.76243 -29.76108 -27.83133 -27.51603 -25.45004 -24.67065 -22.74879 -21.47852 -21.19203 -20.34316 -18.90569 -18.37370 -17.71397 -16.85562 -16.72952 -16.25218 -16.02402 -15.58986 -15.35867 -14.87505 -14.59228 -14.43670 -14.08921 -14.05363 -13.61074 -13.47976 -13.40161 -13.16565 -13.11743 -12.88905 -12.73336 -12.71863 -12.33228 -12.17541 -11.91200 -11.84005 -11.76879 -11.68273 -11.40851 -11.33729 -10.77814 -10.77314 -9.64563 -9.07372 -8.37583 -6.55172 0.79460 1.34018 1.34930 1.38875 1.50458 1.64277 2.05679 2.20660 2.35128 2.92774 3.44715 3.76745 3.82263 3.94524 4.19682 4.31147 4.37163 4.38705 4.59585 4.63836 4.72361 4.80552 4.82934 4.87737 4.88914 4.90352 4.92070 4.97074 5.05409 5.14556 5.20503 5.22775 5.24306 5.34752 5.45996 5.50019 5.55043 5.75490 5.95217 6.15633 6.28925 6.56213 6.96849 7.03292 7.17228 8.69199 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.012376 B = 0.005436 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.932366 B = 5149.568377 C = 6948.087045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.096 4.096 4 C -0.095 4.095 5 H 0.125 0.875 6 C -0.148 4.148 7 C 0.519 3.481 8 O -0.542 6.542 9 N -0.639 5.639 10 C 0.299 3.701 11 C -0.310 4.310 12 C 0.058 3.942 13 C -0.060 4.060 14 N -0.333 5.333 15 N -0.368 5.368 16 C 0.272 3.728 17 C -0.555 4.555 18 H 0.046 0.954 19 C 0.029 3.971 20 N -0.913 5.913 21 Si 0.969 3.031 22 H -0.277 1.277 23 H -0.276 1.276 24 H -0.263 1.263 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.100 0.900 34 H 0.053 0.947 35 H 0.420 0.580 36 H 0.167 0.833 37 H 0.084 0.916 38 H 0.095 0.905 39 H 0.075 0.925 40 H 0.027 0.973 41 H 0.048 0.952 42 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.872 -5.779 0.945 16.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.134 4.134 4 C -0.116 4.116 5 H 0.143 0.857 6 C -0.206 4.206 7 C 0.308 3.692 8 O -0.417 6.417 9 N -0.287 5.287 10 C 0.076 3.924 11 C -0.342 4.342 12 C -0.107 4.107 13 C -0.119 4.119 14 N -0.158 5.158 15 N -0.153 5.153 16 C 0.153 3.847 17 C -0.593 4.593 18 H 0.064 0.936 19 C -0.173 4.173 20 N -0.551 5.551 21 Si 0.793 3.207 22 H -0.202 1.202 23 H -0.201 1.201 24 H -0.187 1.187 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.083 0.917 28 H 0.094 0.906 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.119 0.881 34 H 0.072 0.928 35 H 0.258 0.742 36 H 0.184 0.816 37 H 0.103 0.897 38 H 0.114 0.886 39 H 0.094 0.906 40 H 0.045 0.955 41 H 0.066 0.934 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -14.964 -5.087 1.065 15.840 hybrid contribution 0.414 -0.553 -0.765 1.031 sum -14.549 -5.640 0.299 15.607 Atomic orbital electron populations 1.21772 0.95482 1.02108 1.01710 1.21582 0.96219 0.94862 1.03190 1.21421 0.91073 0.98287 1.02592 1.21416 0.98405 0.89218 1.02542 0.85750 1.21905 1.01408 1.02729 0.94519 1.21710 0.79754 0.93535 0.74185 1.90591 1.55294 1.47213 1.48652 1.43122 1.09178 1.04853 1.71570 1.18410 0.85532 0.87254 1.01205 1.21473 1.01037 0.89087 1.22608 1.22893 0.89908 0.98892 0.98997 1.20222 1.02361 0.85731 1.03556 1.77291 1.22068 0.88312 1.28105 1.49166 1.04562 1.05004 1.56566 1.19224 0.80874 0.86814 0.97743 1.21413 1.15370 1.30941 0.91623 0.93618 1.25664 0.94967 0.94222 1.02408 1.69990 1.19864 1.31042 1.34211 0.85344 0.78056 0.78616 0.78672 1.20230 1.20109 1.18732 0.93023 0.93015 0.91664 0.90589 0.90922 0.92125 0.92305 0.92335 0.88107 0.92817 0.74193 0.81605 0.89703 0.88615 0.90595 0.95538 0.93423 0.91588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.91 71.98 0.71 -1.32 16 2 C -0.12 -1.67 5.69 30.59 0.17 -1.50 16 3 C -0.10 -1.86 4.03 30.59 0.12 -1.73 16 4 C -0.09 -1.98 2.73 -11.54 -0.03 -2.02 16 5 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 6 C -0.15 -2.82 8.84 71.98 0.64 -2.19 16 7 C 0.52 16.24 7.12 87.66 0.62 16.86 16 8 O -0.54 -19.92 13.05 -3.07 -0.04 -19.96 16 9 N -0.64 -22.83 5.30 -308.55 -1.64 -24.46 16 10 C 0.30 13.09 7.66 131.31 1.01 14.10 16 11 C -0.31 -13.10 9.58 22.14 0.21 -12.89 16 12 C 0.06 2.40 7.21 43.07 0.31 2.71 16 13 C -0.06 -1.74 10.44 71.24 0.74 -1.00 16 14 N -0.33 -16.18 12.56 -47.45 -0.60 -16.78 16 15 N -0.37 -18.05 3.60 -348.73 -1.26 -19.31 16 16 C 0.27 14.20 6.01 85.64 0.51 14.72 16 17 C -0.56 -30.59 9.39 25.60 0.24 -30.35 16 18 H 0.05 2.65 7.81 -2.91 -0.02 2.63 16 19 C 0.03 1.55 5.46 84.65 0.46 2.01 16 20 N -0.91 -49.83 13.29 21.44 0.28 -49.54 16 21 Si 0.97 42.03 29.54 68.60 2.03 44.06 16 22 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 23 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 24 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 25 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 26 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 27 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.08 0.91 6.57 -2.39 -0.02 0.90 16 29 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.06 1.32 7.95 -2.39 -0.02 1.30 16 31 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.06 1.22 7.56 -2.38 -0.02 1.21 16 33 H 0.10 1.35 6.57 -2.38 -0.02 1.34 16 34 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 35 H 0.42 13.91 7.37 -92.71 -0.68 13.23 16 36 H 0.17 6.78 5.83 -2.91 -0.02 6.76 16 37 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.05 2.39 7.50 -2.39 -0.02 2.37 16 42 H 0.27 13.94 8.31 -92.71 -0.77 13.17 16 Total: -1.00 -67.69 347.76 4.84 -62.85 By element: Atomic # 1 Polarization: 25.41 SS G_CDS: 0.33 Total: 25.74 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: 5.73 Total: -2.60 kcal Atomic # 7 Polarization: -106.89 SS G_CDS: -3.20 Total: -110.09 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -0.04 Total: -19.96 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Total: -67.69 4.84 -62.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609579989.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.086 kcal (2) G-P(sol) polarization free energy of solvation -67.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds