Wall clock time and date at job start Tue Mar 31 2020 02:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.53001 * 109.46799 * 2 1 4 4 C 1.47199 * 109.46648 * 240.00668 * 2 1 3 5 5 N 2.60805 * 109.46732 * 240.00341 * 2 1 3 6 6 C 1.52994 * 109.47150 * 120.00252 * 2 1 3 7 7 C 1.50696 * 109.47424 * 299.99627 * 6 2 1 8 8 O 1.21287 * 119.99701 * 0.02562 * 7 6 2 9 9 N 1.34774 * 120.00326 * 179.97438 * 7 6 2 10 10 C 1.46498 * 120.00360 * 180.02562 * 9 7 6 11 11 C 1.53071 * 109.44009 * 84.79625 * 10 9 7 12 12 C 1.53201 * 109.29371 * 181.23934 * 11 10 9 13 13 N 1.46928 * 108.89275 * 305.57634 * 12 11 10 14 14 C 1.36934 * 120.63265 * 233.51651 * 13 12 11 15 15 H 1.07997 * 119.99862 * 151.82898 * 14 13 12 16 16 C 1.38806 * 120.00015 * 331.83027 * 14 13 12 17 17 N 1.31624 * 120.00191 * 343.08772 * 16 14 13 18 18 Si 1.86800 * 120.00146 * 163.08448 * 16 14 13 19 19 H 1.48503 * 109.47142 * 60.00161 * 18 16 14 20 20 H 1.48498 * 109.47084 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47267 * 300.00095 * 18 16 14 22 22 C 1.46932 * 118.73342 * 53.53882 * 13 12 11 23 23 C 1.53045 * 109.46092 * 205.00269 * 10 9 7 24 24 H 1.09000 * 109.46627 * 299.99598 * 1 2 3 25 25 H 1.08999 * 109.47358 * 59.99564 * 1 2 3 26 26 H 1.08999 * 109.47047 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46922 * 180.02562 * 3 2 1 28 28 H 1.08999 * 109.47521 * 300.00336 * 3 2 1 29 29 H 1.09000 * 109.47203 * 60.00754 * 3 2 1 30 30 H 1.09003 * 109.46960 * 180.02562 * 6 2 1 31 31 H 1.08999 * 109.46885 * 60.00154 * 6 2 1 32 32 H 0.97005 * 119.99791 * 0.02562 * 9 7 6 33 33 H 1.08998 * 109.45866 * 324.97703 * 10 9 7 34 34 H 1.09002 * 109.39343 * 61.36176 * 11 10 9 35 35 H 1.09003 * 109.62467 * 301.25403 * 11 10 9 36 36 H 1.09000 * 109.58250 * 185.72113 * 12 11 10 37 37 H 1.08995 * 109.58477 * 65.43833 * 12 11 10 38 38 H 0.96995 * 120.00379 * 180.02562 * 17 16 14 39 39 H 1.08996 * 109.59017 * 66.18099 * 22 13 12 40 40 H 1.09009 * 109.58200 * 186.46074 * 22 13 12 41 41 H 1.09002 * 109.49555 * 58.67538 * 23 10 9 42 42 H 1.08992 * 109.52043 * 298.59539 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0207 -0.6938 -1.2020 5 7 2.3993 -1.2293 -2.1296 6 6 2.0401 -0.7213 1.2492 7 6 1.5379 -0.0109 2.4797 8 8 0.8403 0.9749 2.3684 9 7 1.8631 -0.4717 3.7037 10 6 1.3744 0.2185 4.9000 11 6 -0.0309 -0.2841 5.2398 12 6 -0.5510 0.4619 6.4727 13 7 0.4242 0.3179 7.5622 14 6 0.0362 -0.1532 8.7881 15 1 0.7435 -0.6776 9.4135 16 6 -1.2660 0.0431 9.2267 17 7 -2.0272 0.9458 8.6453 18 14 -1.9381 -0.9739 10.6421 19 1 -1.1124 -0.7417 11.8544 20 1 -3.3422 -0.5750 10.9152 21 1 -1.8943 -2.4138 10.2817 22 6 1.8234 0.6896 7.3116 23 6 2.3186 -0.0613 6.0715 24 1 -0.3632 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 3.1301 1.4426 -0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6768 1.9563 0.8900 30 1 3.1301 -0.7209 1.2494 31 1 1.6768 -1.7489 1.2491 32 1 2.4207 -1.2605 3.7927 33 1 1.3383 1.2913 4.7109 34 1 0.0080 -1.3528 5.4508 35 1 -0.6981 -0.1034 4.3969 36 1 -1.5072 0.0381 6.7797 37 1 -0.6790 1.5176 6.2339 38 1 -2.9371 1.0833 8.9521 39 1 1.8910 1.7638 7.1396 40 1 2.4335 0.4185 8.1733 41 1 3.3231 0.2775 5.8180 42 1 2.3366 -1.1315 6.2772 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000618652644.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:27:04 Heat of formation + Delta-G solvation = 0.337490 kcal Electronic energy + Delta-G solvation = -22075.412877 eV Core-core repulsion = 18862.790443 eV Total energy + Delta-G solvation = -3212.622434 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.36669 -38.13571 -37.07567 -35.00976 -34.32538 -32.25640 -30.26368 -29.74893 -28.14122 -27.51187 -24.98022 -23.34808 -22.29462 -21.84128 -20.27709 -19.26472 -17.50197 -17.00672 -16.25617 -15.80290 -15.48130 -14.85896 -14.58536 -14.54081 -14.18724 -13.85162 -13.54642 -13.20952 -13.03992 -13.00735 -12.81402 -12.62290 -12.40159 -12.09567 -11.84940 -11.64320 -11.51588 -11.25291 -11.15801 -11.11738 -10.92767 -10.73872 -10.41460 -10.28502 -10.09208 -9.79080 -9.77189 -9.42537 -8.75007 -8.44734 -6.70898 -5.80846 -3.24149 2.45408 2.53052 2.65645 3.17796 3.37014 3.43258 3.43807 3.77797 4.33004 4.47516 4.54254 4.70141 4.92127 5.20192 5.26250 5.27466 5.38460 5.42135 5.52693 5.59336 5.63357 5.71292 5.76913 5.78421 6.03036 6.10550 6.20741 6.21672 6.36116 6.40845 6.57179 6.61930 6.73344 6.86777 6.90552 7.29781 7.34517 7.60743 7.66661 7.77261 8.30993 8.43022 9.18855 9.81950 10.38380 11.27671 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.036990 B = 0.003398 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.781930 B = 8237.385758 C = 8456.511786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.054 3.946 3 C -0.154 4.154 4 C 0.218 3.782 5 N -0.440 5.440 6 C -0.135 4.135 7 C 0.516 3.484 8 O -0.530 6.530 9 N -0.722 5.722 10 C 0.151 3.849 11 C -0.146 4.146 12 C 0.173 3.827 13 N -0.592 5.592 14 C -0.256 4.256 15 H 0.065 0.935 16 C 0.004 3.996 17 N -0.901 5.901 18 Si 0.903 3.097 19 H -0.283 1.283 20 H -0.290 1.290 21 H -0.284 1.284 22 C 0.148 3.852 23 C -0.139 4.139 24 H 0.109 0.891 25 H 0.061 0.939 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.108 0.892 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.396 0.604 33 H 0.083 0.917 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.089 0.911 37 H 0.021 0.979 38 H 0.255 0.745 39 H 0.020 0.980 40 H 0.058 0.942 41 H 0.055 0.945 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.221 -2.389 -13.203 15.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.050 3.950 3 C -0.212 4.212 4 C -0.100 4.100 5 N -0.115 5.115 6 C -0.176 4.176 7 C 0.302 3.698 8 O -0.408 6.408 9 N -0.371 5.371 10 C 0.047 3.953 11 C -0.187 4.187 12 C 0.047 3.953 13 N -0.315 5.315 14 C -0.386 4.386 15 H 0.083 0.917 16 C -0.195 4.195 17 N -0.545 5.545 18 Si 0.732 3.268 19 H -0.209 1.209 20 H -0.216 1.216 21 H -0.210 1.210 22 C 0.021 3.979 23 C -0.179 4.179 24 H 0.127 0.873 25 H 0.080 0.920 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.126 0.874 30 H 0.118 0.882 31 H 0.119 0.881 32 H 0.229 0.771 33 H 0.102 0.898 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.107 0.893 37 H 0.039 0.961 38 H 0.065 0.935 39 H 0.038 0.962 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.117 -2.435 -14.623 16.901 hybrid contribution -0.196 -0.864 1.004 1.339 sum 7.921 -3.299 -13.619 16.097 Atomic orbital electron populations 1.22180 0.90644 1.02991 1.05434 1.17964 0.97637 0.94802 0.84633 1.22170 1.00879 0.92704 1.05408 1.29281 0.92956 0.93218 0.94538 1.81208 1.09301 1.09536 1.11414 1.21739 1.03077 1.00938 0.91884 1.20171 0.80522 0.84690 0.84421 1.90600 1.37685 1.26347 1.86165 1.46351 1.53011 1.31769 1.06015 1.21072 0.94567 0.97212 0.82408 1.22568 0.94957 1.00858 1.00270 1.20750 0.94201 0.96316 0.84026 1.44091 1.02829 1.75226 1.09379 1.19123 0.96108 1.28937 0.94420 0.91716 1.25059 0.98661 0.97509 0.98291 1.70019 1.08752 1.32161 1.43579 0.86374 0.78008 0.80194 0.82194 1.20877 1.21623 1.21044 1.20837 0.87667 0.95414 0.93980 1.22333 0.97232 1.01811 0.96543 0.87308 0.92037 0.92457 0.92544 0.92041 0.87378 0.88187 0.88104 0.77102 0.89846 0.92761 0.92700 0.89333 0.96125 0.93498 0.96209 0.92386 0.92623 0.91883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 8.13 37.16 0.30 -1.11 16 2 C 0.05 0.47 0.69 -157.29 -0.11 0.36 16 3 C -0.15 -1.33 8.13 37.16 0.30 -1.03 16 4 C 0.22 2.26 13.86 -20.76 -0.29 1.97 16 5 N -0.44 -5.62 18.54 42.16 0.78 -4.84 16 6 C -0.14 -1.05 4.72 -27.89 -0.13 -1.18 16 7 C 0.52 5.72 7.20 -10.99 -0.08 5.64 16 8 O -0.53 -7.45 11.01 5.55 0.06 -7.39 16 9 N -0.72 -8.18 5.08 -53.75 -0.27 -8.45 16 10 C 0.15 2.30 2.41 -67.87 -0.16 2.14 16 11 C -0.15 -2.66 5.66 -26.59 -0.15 -2.81 16 12 C 0.17 4.01 5.30 -3.71 -0.02 3.99 16 13 N -0.59 -14.21 3.00 -172.31 -0.52 -14.73 16 14 C -0.26 -6.81 9.58 -15.06 -0.14 -6.95 16 15 H 0.07 1.68 7.88 -52.49 -0.41 1.26 16 16 C 0.00 0.10 4.92 -17.43 -0.09 0.02 16 17 N -0.90 -25.71 11.20 55.49 0.62 -25.09 16 18 Si 0.90 21.20 29.59 -169.99 -5.03 16.17 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 C 0.15 2.89 6.52 -3.71 -0.02 2.86 16 23 C -0.14 -2.11 5.55 -26.61 -0.15 -2.25 16 24 H 0.11 1.20 5.51 -51.93 -0.29 0.92 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.11 1.13 5.51 -51.93 -0.29 0.84 16 30 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.40 3.41 8.60 -40.82 -0.35 3.05 16 33 H 0.08 1.44 7.58 -51.93 -0.39 1.05 16 34 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.09 2.32 6.06 -51.93 -0.31 2.00 16 37 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 39 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.06 1.10 7.93 -51.92 -0.41 0.69 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 337.50 15.07 5.09 5.09 Total: -1.00 -30.59 337.50 -6.67 -37.27 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -6.67 Total: 0.34 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: -0.74 Total: 1.63 kcal Atomic # 7 Polarization: -53.72 SS G_CDS: 0.61 Total: -53.11 kcal Atomic # 8 Polarization: -7.45 SS G_CDS: 0.06 Total: -7.39 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.17 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.59 -6.67 -37.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618652644.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.603 kcal (2) G-P(sol) polarization free energy of solvation -30.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds