Wall clock time and date at job start Tue Mar 31 2020 02:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.53001 * 109.46799 * 2 1 4 4 C 1.47199 * 109.46648 * 240.00668 * 2 1 3 5 5 N 2.60805 * 109.46732 * 240.00341 * 2 1 3 6 6 C 1.52994 * 109.47150 * 120.00252 * 2 1 3 7 7 C 1.50696 * 109.47424 * 299.99627 * 6 2 1 8 8 O 1.21287 * 119.99701 * 0.02562 * 7 6 2 9 9 N 1.34774 * 120.00326 * 179.97438 * 7 6 2 10 10 C 1.46498 * 120.00360 * 180.02562 * 9 7 6 11 11 C 1.53071 * 109.44009 * 84.79625 * 10 9 7 12 12 C 1.53201 * 109.29371 * 181.23934 * 11 10 9 13 13 N 1.46928 * 108.89275 * 305.57634 * 12 11 10 14 14 C 1.36934 * 120.63265 * 233.51651 * 13 12 11 15 15 H 1.07997 * 119.99862 * 151.82898 * 14 13 12 16 16 C 1.38806 * 120.00015 * 331.83027 * 14 13 12 17 17 N 1.31624 * 120.00191 * 343.08772 * 16 14 13 18 18 Si 1.86800 * 120.00146 * 163.08448 * 16 14 13 19 19 H 1.48503 * 109.47142 * 60.00161 * 18 16 14 20 20 H 1.48498 * 109.47084 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47267 * 300.00095 * 18 16 14 22 22 C 1.46932 * 118.73342 * 53.53882 * 13 12 11 23 23 C 1.53045 * 109.46092 * 205.00269 * 10 9 7 24 24 H 1.09000 * 109.46627 * 299.99598 * 1 2 3 25 25 H 1.08999 * 109.47358 * 59.99564 * 1 2 3 26 26 H 1.08999 * 109.47047 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46922 * 180.02562 * 3 2 1 28 28 H 1.08999 * 109.47521 * 300.00336 * 3 2 1 29 29 H 1.09000 * 109.47203 * 60.00754 * 3 2 1 30 30 H 1.09003 * 109.46960 * 180.02562 * 6 2 1 31 31 H 1.08999 * 109.46885 * 60.00154 * 6 2 1 32 32 H 0.97005 * 119.99791 * 0.02562 * 9 7 6 33 33 H 1.08998 * 109.45866 * 324.97703 * 10 9 7 34 34 H 1.09002 * 109.39343 * 61.36176 * 11 10 9 35 35 H 1.09003 * 109.62467 * 301.25403 * 11 10 9 36 36 H 1.09000 * 109.58250 * 185.72113 * 12 11 10 37 37 H 1.08995 * 109.58477 * 65.43833 * 12 11 10 38 38 H 0.96995 * 120.00379 * 180.02562 * 17 16 14 39 39 H 1.08996 * 109.59017 * 66.18099 * 22 13 12 40 40 H 1.09009 * 109.58200 * 186.46074 * 22 13 12 41 41 H 1.09002 * 109.49555 * 58.67538 * 23 10 9 42 42 H 1.08992 * 109.52043 * 298.59539 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0207 -0.6938 -1.2020 5 7 2.3993 -1.2293 -2.1296 6 6 2.0401 -0.7213 1.2492 7 6 1.5379 -0.0109 2.4797 8 8 0.8403 0.9749 2.3684 9 7 1.8631 -0.4717 3.7037 10 6 1.3744 0.2185 4.9000 11 6 -0.0309 -0.2841 5.2398 12 6 -0.5510 0.4619 6.4727 13 7 0.4242 0.3179 7.5622 14 6 0.0362 -0.1532 8.7881 15 1 0.7435 -0.6776 9.4135 16 6 -1.2660 0.0431 9.2267 17 7 -2.0272 0.9458 8.6453 18 14 -1.9381 -0.9739 10.6421 19 1 -1.1124 -0.7417 11.8544 20 1 -3.3422 -0.5750 10.9152 21 1 -1.8943 -2.4138 10.2817 22 6 1.8234 0.6896 7.3116 23 6 2.3186 -0.0613 6.0715 24 1 -0.3632 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 3.1301 1.4426 -0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6768 1.9563 0.8900 30 1 3.1301 -0.7209 1.2494 31 1 1.6768 -1.7489 1.2491 32 1 2.4207 -1.2605 3.7927 33 1 1.3383 1.2913 4.7109 34 1 0.0080 -1.3528 5.4508 35 1 -0.6981 -0.1034 4.3969 36 1 -1.5072 0.0381 6.7797 37 1 -0.6790 1.5176 6.2339 38 1 -2.9371 1.0833 8.9521 39 1 1.8910 1.7638 7.1396 40 1 2.4335 0.4185 8.1733 41 1 3.3231 0.2775 5.8180 42 1 2.3366 -1.1315 6.2772 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000618652644.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:27:04 Heat of formation + Delta-G solvation = -18.907414 kcal Electronic energy + Delta-G solvation = -22076.247399 eV Core-core repulsion = 18862.790443 eV Total energy + Delta-G solvation = -3213.456956 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.29145 -39.35308 -38.21525 -36.15513 -35.43526 -33.89266 -31.80466 -31.32159 -29.09992 -28.21811 -26.70982 -24.34367 -23.84415 -23.28135 -21.31076 -20.75843 -18.77165 -18.25218 -17.39729 -16.90141 -16.59529 -16.31551 -15.66152 -15.43994 -15.32251 -15.28942 -15.02153 -14.70302 -14.38324 -13.99982 -13.92265 -13.69364 -13.62570 -13.13791 -12.96684 -12.80879 -12.69647 -12.56100 -12.53294 -12.35308 -12.04309 -12.00297 -11.91633 -11.84319 -11.78123 -11.42654 -11.27170 -10.53496 -10.48010 -9.81994 -8.66573 -7.84596 -5.30516 1.49546 1.51808 1.58470 1.63899 1.70768 1.80487 2.26793 2.54030 2.93915 3.31333 3.62621 3.72203 3.88069 3.92519 4.01516 4.17176 4.22406 4.43020 4.55309 4.63585 4.67378 4.74284 4.83952 4.87896 4.93326 4.97696 5.00841 5.07219 5.15268 5.16599 5.21581 5.39326 5.43283 5.48615 5.53591 5.67855 5.75760 5.77333 6.42051 6.49733 6.74971 7.17451 7.45973 7.89077 8.40566 9.21838 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.036990 B = 0.003398 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.781930 B = 8237.385758 C = 8456.511786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.058 3.942 3 C -0.152 4.152 4 C 0.245 3.755 5 N -0.481 5.481 6 C -0.126 4.126 7 C 0.516 3.484 8 O -0.561 6.561 9 N -0.712 5.712 10 C 0.164 3.836 11 C -0.130 4.130 12 C 0.181 3.819 13 N -0.611 5.611 14 C -0.262 4.262 15 H 0.071 0.929 16 C -0.053 4.053 17 N -0.937 5.937 18 Si 0.967 3.033 19 H -0.274 1.274 20 H -0.298 1.298 21 H -0.277 1.277 22 C 0.140 3.860 23 C -0.123 4.123 24 H 0.090 0.910 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.091 0.909 30 H 0.128 0.872 31 H 0.123 0.877 32 H 0.414 0.586 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.053 0.947 36 H 0.051 0.949 37 H -0.010 1.010 38 H 0.249 0.751 39 H 0.012 0.988 40 H 0.062 0.938 41 H 0.092 0.908 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.302 -4.047 -13.944 17.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.054 3.946 3 C -0.210 4.210 4 C -0.073 4.073 5 N -0.156 5.156 6 C -0.167 4.167 7 C 0.303 3.697 8 O -0.441 6.441 9 N -0.363 5.363 10 C 0.059 3.941 11 C -0.170 4.170 12 C 0.055 3.945 13 N -0.334 5.334 14 C -0.392 4.392 15 H 0.089 0.911 16 C -0.248 4.248 17 N -0.583 5.583 18 Si 0.795 3.205 19 H -0.200 1.200 20 H -0.224 1.224 21 H -0.203 1.203 22 C 0.014 3.986 23 C -0.162 4.162 24 H 0.109 0.891 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.110 0.890 30 H 0.146 0.854 31 H 0.141 0.859 32 H 0.251 0.749 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.008 0.992 38 H 0.058 0.942 39 H 0.030 0.970 40 H 0.081 0.919 41 H 0.110 0.890 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 10.255 -4.124 -15.385 18.944 hybrid contribution -0.834 -0.264 1.219 1.500 sum 9.421 -4.388 -14.166 17.570 Atomic orbital electron populations 1.22135 0.91054 1.03286 1.04709 1.17982 0.97245 0.94830 0.84539 1.22126 1.01668 0.92457 1.04736 1.29346 0.91755 0.92123 0.94034 1.81249 1.10729 1.10975 1.12616 1.21737 1.04728 1.01173 0.89074 1.20716 0.79684 0.84232 0.85023 1.90624 1.38962 1.27877 1.86602 1.46034 1.53221 1.32249 1.04782 1.20603 0.92913 0.96316 0.84271 1.22303 0.96988 1.00142 0.97580 1.20481 0.93207 0.94831 0.86006 1.44355 1.04636 1.75551 1.08881 1.19514 0.96304 1.28209 0.95211 0.91112 1.25832 0.99189 0.98733 1.01052 1.70191 1.08656 1.34056 1.45407 0.85354 0.76786 0.78816 0.79564 1.20015 1.22414 1.20272 1.21047 0.85382 0.95635 0.96499 1.22123 0.98516 1.01672 0.93900 0.89148 0.91663 0.91667 0.91258 0.91749 0.89026 0.85358 0.85911 0.74902 0.91891 0.92404 0.92865 0.93029 0.99208 0.94209 0.97035 0.91901 0.89000 0.90938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 8.13 71.99 0.59 -1.98 16 2 C 0.06 0.87 0.69 -53.99 -0.04 0.83 16 3 C -0.15 -2.34 8.13 71.98 0.59 -1.75 16 4 C 0.24 4.45 13.86 89.44 1.24 5.68 16 5 N -0.48 -11.34 18.54 20.01 0.37 -10.97 16 6 C -0.13 -1.50 4.72 29.84 0.14 -1.36 16 7 C 0.52 10.09 7.20 87.66 0.63 10.72 16 8 O -0.56 -15.18 11.01 -3.05 -0.03 -15.21 16 9 N -0.71 -13.85 5.08 -442.36 -2.25 -16.10 16 10 C 0.16 4.73 2.41 45.03 0.11 4.84 16 11 C -0.13 -4.70 5.66 30.69 0.17 -4.52 16 12 C 0.18 8.69 5.30 86.37 0.46 9.15 16 13 N -0.61 -29.60 3.00 -699.07 -2.09 -31.69 16 14 C -0.26 -14.02 9.58 84.03 0.81 -13.21 16 15 H 0.07 3.62 7.88 -2.91 -0.02 3.60 16 16 C -0.05 -2.92 4.92 84.86 0.42 -2.50 16 17 N -0.94 -55.53 11.20 21.65 0.24 -55.29 16 18 Si 0.97 44.14 29.59 68.60 2.03 46.17 16 19 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 20 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 21 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 22 C 0.14 5.33 6.52 86.36 0.56 5.89 16 23 C -0.12 -3.36 5.55 30.67 0.17 -3.19 16 24 H 0.09 1.93 5.51 -2.39 -0.01 1.92 16 25 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.09 1.81 5.51 -2.39 -0.01 1.79 16 30 H 0.13 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.41 5.25 8.60 -92.70 -0.80 4.46 16 33 H 0.06 2.13 7.58 -2.39 -0.02 2.11 16 34 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.05 2.83 6.06 -2.39 -0.01 2.82 16 37 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 38 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 39 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 40 H 0.06 2.30 7.93 -2.38 -0.02 2.28 16 41 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -68.97 337.50 4.33 -64.64 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: 0.22 Total: 9.85 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: 5.84 Total: 8.60 kcal Atomic # 7 Polarization: -110.32 SS G_CDS: -3.73 Total: -114.05 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: -0.03 Total: -15.21 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -68.97 4.33 -64.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618652644.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.729 kcal (2) G-P(sol) polarization free energy of solvation -68.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds