Wall clock time and date at job start Tue Mar 31 2020 03:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.09000 * 109.46815 * 54.28334 * 3 2 1 5 5 C 1.50698 * 109.46997 * 174.27857 * 3 2 1 6 6 H 1.07998 * 120.00113 * 114.30626 * 5 3 2 7 7 C 1.37885 * 120.00206 * 294.30516 * 5 3 2 8 8 N 1.31513 * 119.99776 * 153.95278 * 7 5 3 9 9 Si 1.86800 * 119.99811 * 333.95909 * 7 5 3 10 10 H 1.48501 * 109.46792 * 180.02562 * 9 7 5 11 11 H 1.48504 * 109.46850 * 299.99560 * 9 7 5 12 12 H 1.48492 * 109.47278 * 59.99696 * 9 7 5 13 13 N 1.46491 * 109.47275 * 294.27990 * 3 2 1 14 14 C 1.34781 * 119.99991 * 84.99959 * 13 3 2 15 15 O 1.21283 * 120.00070 * 0.02562 * 14 13 3 16 16 C 1.50705 * 119.99955 * 179.97438 * 14 13 3 17 17 C 1.53002 * 109.46981 * 180.02562 * 16 14 13 18 18 N 1.46500 * 109.46894 * 180.02562 * 17 16 14 19 19 N 1.40084 * 126.03577 * 90.02575 * 18 17 16 20 20 C 1.30840 * 108.20411 * 179.97438 * 19 18 17 21 21 C 1.50700 * 125.89646 * 180.02562 * 20 19 18 22 22 C 1.39866 * 108.20084 * 359.97438 * 20 19 18 23 23 C 1.34946 * 126.03721 * 269.71349 * 18 17 16 24 24 C 1.50698 * 126.12908 * 0.02562 * 23 18 17 25 25 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 26 26 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 27 27 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 29 29 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 30 30 H 0.96996 * 120.00478 * 354.97061 * 8 7 5 31 31 H 0.97000 * 120.00810 * 264.99777 * 13 3 2 32 32 H 1.08999 * 109.47161 * 300.00319 * 16 14 13 33 33 H 1.08996 * 109.46861 * 60.00556 * 16 14 13 34 34 H 1.08999 * 109.47408 * 300.00136 * 17 16 14 35 35 H 1.08999 * 109.46846 * 60.00007 * 17 16 14 36 36 H 1.08991 * 109.47579 * 89.97125 * 21 20 19 37 37 H 1.09002 * 109.46544 * 209.97465 * 21 20 19 38 38 H 1.09004 * 109.47063 * 329.96922 * 21 20 19 39 39 H 1.07999 * 126.03470 * 179.97438 * 22 20 19 40 40 H 1.09008 * 109.47059 * 89.99533 * 24 23 18 41 41 H 1.08992 * 109.47637 * 209.99729 * 24 23 18 42 42 H 1.09001 * 109.47016 * 330.00383 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5953 1.9850 0.8344 5 6 3.5402 1.4450 0.1416 6 1 4.1585 1.8023 -0.6685 7 6 4.1236 0.9911 1.3056 8 7 5.3469 0.5087 1.2833 9 14 3.1763 1.0612 2.9141 10 1 4.0195 0.5178 4.0091 11 1 2.8198 2.4705 3.2175 12 1 1.9372 0.2518 2.7945 13 7 1.6672 2.0923 -1.2590 14 6 0.4513 2.6586 -1.3909 15 8 -0.3341 2.6307 -0.4672 16 6 0.0681 3.3275 -2.6859 17 6 -1.3523 3.8846 -2.5713 18 7 -1.7250 4.5343 -3.8303 19 7 -2.3510 3.9184 -4.9217 20 6 -2.5211 4.8180 -5.8565 21 6 -3.1586 4.5845 -7.2019 22 6 -2.0102 6.0338 -5.3908 23 6 -1.5312 5.8330 -4.1413 24 6 -0.8930 6.8728 -3.2567 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 5.8117 0.4042 0.4384 31 1 2.2954 2.1150 -1.9977 32 1 0.7620 4.1421 -2.8933 33 1 0.1091 2.6000 -3.4965 34 1 -2.0464 3.0703 -2.3637 35 1 -1.3928 4.6121 -1.7606 36 1 -4.2314 4.7639 -7.1317 37 1 -2.7234 5.2657 -7.9331 38 1 -2.9819 3.5552 -7.5140 39 1 -2.0022 6.9685 -5.9318 40 1 0.1821 6.8920 -3.4359 41 1 -1.3164 7.8514 -3.4824 42 1 -1.0827 6.6270 -2.2119 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701309300.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:42 Heat of formation + Delta-G solvation = 16.459421 kcal Electronic energy + Delta-G solvation = -21732.519458 eV Core-core repulsion = 18520.596123 eV Total energy + Delta-G solvation = -3211.923335 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.37373 -39.35353 -35.58388 -34.59362 -32.61713 -32.43197 -31.60292 -30.71800 -28.16461 -27.16489 -26.93278 -23.84512 -22.36515 -20.58884 -20.40788 -19.58365 -19.29555 -17.90094 -16.94644 -15.79900 -15.75385 -15.58210 -15.07058 -14.33477 -13.96088 -13.74633 -13.52197 -13.37351 -13.30903 -13.12767 -12.79534 -12.63089 -12.52169 -12.46656 -12.20135 -12.00789 -11.84566 -11.72204 -11.23755 -10.84374 -10.74280 -10.56046 -10.46981 -9.90565 -9.83826 -9.39488 -9.22716 -9.08959 -8.55804 -8.29935 -8.16699 -6.65798 -4.25108 1.78075 2.38082 2.68204 3.11506 3.37510 3.42343 3.57895 3.93190 4.40249 4.44501 4.49181 4.75044 4.84557 4.92400 5.03519 5.17017 5.20419 5.31123 5.41855 5.43974 5.49837 5.56599 5.59405 5.71272 5.79197 5.83657 6.04042 6.06631 6.12869 6.24604 6.62116 6.65392 6.76160 6.91550 6.97166 7.00595 7.31424 7.34848 7.62216 7.70606 8.19866 8.39177 8.64215 8.88515 9.39857 10.72105 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.030285 B = 0.003501 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.332793 B = 7996.605696 C = 8205.817624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.132 4.132 3 C 0.251 3.749 4 H 0.041 0.959 5 C -0.631 4.631 6 H 0.062 0.938 7 C 0.049 3.951 8 N -0.885 5.885 9 Si 1.030 2.970 10 H -0.283 1.283 11 H -0.281 1.281 12 H -0.273 1.273 13 N -0.698 5.698 14 C 0.507 3.493 15 O -0.553 6.553 16 C -0.158 4.158 17 C 0.150 3.850 18 N -0.365 5.365 19 N -0.296 5.296 20 C 0.067 3.933 21 C -0.070 4.070 22 C -0.279 4.279 23 C 0.087 3.913 24 C -0.096 4.096 25 H 0.051 0.949 26 H 0.048 0.952 27 H 0.030 0.970 28 H 0.049 0.951 29 H 0.063 0.937 30 H 0.272 0.728 31 H 0.393 0.607 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.144 0.856 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.024 10.246 -12.649 20.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.171 4.171 3 C 0.147 3.853 4 H 0.059 0.941 5 C -0.668 4.668 6 H 0.080 0.920 7 C -0.160 4.160 8 N -0.516 5.516 9 Si 0.857 3.143 10 H -0.208 1.208 11 H -0.207 1.207 12 H -0.199 1.199 13 N -0.346 5.346 14 C 0.291 3.709 15 O -0.433 6.433 16 C -0.200 4.200 17 C 0.028 3.972 18 N -0.148 5.148 19 N -0.118 5.118 20 C -0.099 4.099 21 C -0.129 4.129 22 C -0.308 4.308 23 C -0.041 4.041 24 C -0.154 4.154 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.049 0.951 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.226 0.774 32 H 0.111 0.889 33 H 0.115 0.885 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.161 0.839 40 H 0.100 0.900 41 H 0.103 0.897 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -13.530 8.623 -9.871 18.838 hybrid contribution 0.490 1.105 -2.286 2.586 sum -13.040 9.727 -12.158 20.310 Atomic orbital electron populations 1.21892 0.97389 0.98928 1.01896 1.22234 0.93697 0.99716 1.01422 1.19026 0.95791 0.88502 0.81944 0.94126 1.21978 0.89714 1.50240 1.04892 0.91975 1.25617 0.96603 0.91620 1.02113 1.70868 1.13900 1.36279 1.30602 0.84219 0.76065 0.77622 0.76427 1.20814 1.20678 1.19895 1.46279 1.14380 1.55642 1.18253 1.20099 0.82889 0.79351 0.88525 1.90681 1.50689 1.60391 1.41505 1.22022 0.97342 1.02197 0.98417 1.21413 0.95846 0.99252 0.80666 1.48682 1.46058 1.06328 1.13682 1.77346 1.18102 1.21326 0.95057 1.22301 0.99280 0.91872 0.96471 1.20141 0.99927 1.02902 0.89918 1.21071 1.13528 0.99774 0.96413 1.21152 1.00026 0.86512 0.96376 1.20497 1.00831 0.95976 0.98102 0.92989 0.93341 0.95069 0.93187 0.91831 0.91838 0.77376 0.88924 0.88541 0.87889 0.88043 0.90748 0.90615 0.91051 0.83860 0.90011 0.89699 0.90817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 8.53 37.16 0.32 -2.57 16 2 C -0.13 -2.92 5.37 -26.73 -0.14 -3.06 16 3 C 0.25 5.83 1.84 -69.09 -0.13 5.71 16 4 H 0.04 1.03 6.12 -51.93 -0.32 0.71 16 5 C -0.63 -16.70 8.92 -34.44 -0.31 -17.01 16 6 H 0.06 1.72 7.96 -52.49 -0.42 1.30 16 7 C 0.05 1.35 5.15 -17.82 -0.09 1.26 16 8 N -0.89 -25.83 13.70 55.43 0.76 -25.07 16 9 Si 1.03 24.63 26.56 -169.99 -4.51 20.11 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.27 -6.21 6.34 56.52 0.36 -5.85 16 13 N -0.70 -13.49 5.03 -54.93 -0.28 -13.76 16 14 C 0.51 8.92 6.43 -10.98 -0.07 8.85 16 15 O -0.55 -11.23 13.13 5.55 0.07 -11.15 16 16 C -0.16 -2.12 6.02 -27.88 -0.17 -2.29 16 17 C 0.15 1.96 5.54 -4.04 -0.02 1.94 16 18 N -0.37 -4.89 3.61 -57.14 -0.21 -5.10 16 19 N -0.30 -4.33 12.58 33.67 0.42 -3.90 16 20 C 0.07 0.82 7.22 -82.41 -0.59 0.22 16 21 C -0.07 -0.59 10.45 36.01 0.38 -0.21 16 22 C -0.28 -3.13 10.65 -40.01 -0.43 -3.56 16 23 C 0.09 1.01 6.93 -82.27 -0.57 0.44 16 24 C -0.10 -0.80 10.12 36.00 0.36 -0.43 16 25 H 0.05 1.08 7.89 -51.93 -0.41 0.67 16 26 H 0.05 0.95 5.63 -51.93 -0.29 0.66 16 27 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.06 1.48 5.77 -51.93 -0.30 1.18 16 30 H 0.27 7.83 8.73 -40.82 -0.36 7.47 16 31 H 0.39 6.85 8.53 -40.82 -0.35 6.50 16 32 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.10 1.27 8.14 -51.93 -0.42 0.84 16 34 H 0.10 1.45 8.10 -51.93 -0.42 1.03 16 35 H 0.10 1.24 7.00 -51.93 -0.36 0.87 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 40 H 0.08 0.62 8.14 -51.92 -0.42 0.20 16 41 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.61 7.08 -51.93 -0.37 0.24 16 LS Contribution 342.44 15.07 5.16 5.16 Total: -1.00 -31.60 342.44 -6.70 -38.30 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -6.66 Total: 6.13 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: -1.46 Total: -10.72 kcal Atomic # 7 Polarization: -48.54 SS G_CDS: 0.70 Total: -47.84 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.07 Total: -11.15 kcal Atomic # 14 Polarization: 24.63 SS G_CDS: -4.51 Total: 20.11 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.60 -6.70 -38.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701309300.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.763 kcal (2) G-P(sol) polarization free energy of solvation -31.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds