Wall clock time and date at job start Tue Mar 31 2020 03:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.09000 * 109.46815 * 54.28334 * 3 2 1 5 5 C 1.50698 * 109.46997 * 174.27857 * 3 2 1 6 6 H 1.07998 * 120.00113 * 114.30626 * 5 3 2 7 7 C 1.37885 * 120.00206 * 294.30516 * 5 3 2 8 8 N 1.31513 * 119.99776 * 153.95278 * 7 5 3 9 9 Si 1.86800 * 119.99811 * 333.95909 * 7 5 3 10 10 H 1.48501 * 109.46792 * 180.02562 * 9 7 5 11 11 H 1.48504 * 109.46850 * 299.99560 * 9 7 5 12 12 H 1.48492 * 109.47278 * 59.99696 * 9 7 5 13 13 N 1.46491 * 109.47275 * 294.27990 * 3 2 1 14 14 C 1.34781 * 119.99991 * 84.99959 * 13 3 2 15 15 O 1.21283 * 120.00070 * 0.02562 * 14 13 3 16 16 C 1.50705 * 119.99955 * 179.97438 * 14 13 3 17 17 C 1.53002 * 109.46981 * 180.02562 * 16 14 13 18 18 N 1.46500 * 109.46894 * 180.02562 * 17 16 14 19 19 N 1.40084 * 126.03577 * 90.02575 * 18 17 16 20 20 C 1.30840 * 108.20411 * 179.97438 * 19 18 17 21 21 C 1.50700 * 125.89646 * 180.02562 * 20 19 18 22 22 C 1.39866 * 108.20084 * 359.97438 * 20 19 18 23 23 C 1.34946 * 126.03721 * 269.71349 * 18 17 16 24 24 C 1.50698 * 126.12908 * 0.02562 * 23 18 17 25 25 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 26 26 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 27 27 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 29 29 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 30 30 H 0.96996 * 120.00478 * 354.97061 * 8 7 5 31 31 H 0.97000 * 120.00810 * 264.99777 * 13 3 2 32 32 H 1.08999 * 109.47161 * 300.00319 * 16 14 13 33 33 H 1.08996 * 109.46861 * 60.00556 * 16 14 13 34 34 H 1.08999 * 109.47408 * 300.00136 * 17 16 14 35 35 H 1.08999 * 109.46846 * 60.00007 * 17 16 14 36 36 H 1.08991 * 109.47579 * 89.97125 * 21 20 19 37 37 H 1.09002 * 109.46544 * 209.97465 * 21 20 19 38 38 H 1.09004 * 109.47063 * 329.96922 * 21 20 19 39 39 H 1.07999 * 126.03470 * 179.97438 * 22 20 19 40 40 H 1.09008 * 109.47059 * 89.99533 * 24 23 18 41 41 H 1.08992 * 109.47637 * 209.99729 * 24 23 18 42 42 H 1.09001 * 109.47016 * 330.00383 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5953 1.9850 0.8344 5 6 3.5402 1.4450 0.1416 6 1 4.1585 1.8023 -0.6685 7 6 4.1236 0.9911 1.3056 8 7 5.3469 0.5087 1.2833 9 14 3.1763 1.0612 2.9141 10 1 4.0195 0.5178 4.0091 11 1 2.8198 2.4705 3.2175 12 1 1.9372 0.2518 2.7945 13 7 1.6672 2.0923 -1.2590 14 6 0.4513 2.6586 -1.3909 15 8 -0.3341 2.6307 -0.4672 16 6 0.0681 3.3275 -2.6859 17 6 -1.3523 3.8846 -2.5713 18 7 -1.7250 4.5343 -3.8303 19 7 -2.3510 3.9184 -4.9217 20 6 -2.5211 4.8180 -5.8565 21 6 -3.1586 4.5845 -7.2019 22 6 -2.0102 6.0338 -5.3908 23 6 -1.5312 5.8330 -4.1413 24 6 -0.8930 6.8728 -3.2567 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 5.8117 0.4042 0.4384 31 1 2.2954 2.1150 -1.9977 32 1 0.7620 4.1421 -2.8933 33 1 0.1091 2.6000 -3.4965 34 1 -2.0464 3.0703 -2.3637 35 1 -1.3928 4.6121 -1.7606 36 1 -4.2314 4.7639 -7.1317 37 1 -2.7234 5.2657 -7.9331 38 1 -2.9819 3.5552 -7.5140 39 1 -2.0022 6.9685 -5.9318 40 1 0.1821 6.8920 -3.4359 41 1 -1.3164 7.8514 -3.4824 42 1 -1.0827 6.6270 -2.2119 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701309300.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:41 Heat of formation + Delta-G solvation = -4.307066 kcal Electronic energy + Delta-G solvation = -21733.419961 eV Core-core repulsion = 18520.596123 eV Total energy + Delta-G solvation = -3212.823837 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.26639 -40.85546 -37.24280 -35.67654 -34.50380 -33.53484 -33.02956 -31.71148 -29.46487 -28.47720 -27.85913 -25.04599 -24.15759 -22.13130 -21.34135 -21.22327 -20.17441 -19.81054 -18.21863 -17.29958 -16.96361 -16.86307 -16.25731 -15.62200 -15.36949 -14.95776 -14.72421 -14.56858 -14.40896 -14.33217 -14.12390 -13.84817 -13.73308 -13.68147 -13.43748 -13.20675 -12.83851 -12.65895 -12.65201 -12.51964 -12.35328 -12.24651 -11.78428 -11.60042 -11.44047 -11.24397 -10.84865 -10.42330 -10.04776 -9.83048 -9.44148 -8.82821 -6.42222 0.88977 1.44316 1.46698 1.48516 1.68596 1.70453 1.84187 2.42046 2.51961 2.91915 3.52963 3.64185 3.72828 3.91396 4.00526 4.21015 4.28426 4.29668 4.38390 4.49730 4.54549 4.58729 4.64759 4.73981 4.80383 4.84135 4.84966 4.96593 5.05142 5.07968 5.11441 5.19371 5.27658 5.35434 5.52727 5.64168 5.69444 5.80275 6.01337 6.10887 6.52940 6.80255 6.81226 7.25470 7.39192 8.53966 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.030285 B = 0.003501 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.332793 B = 7996.605696 C = 8205.817624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.129 4.129 3 C 0.256 3.744 4 H 0.025 0.975 5 C -0.628 4.628 6 H 0.041 0.959 7 C 0.006 3.994 8 N -0.916 5.916 9 Si 1.063 2.937 10 H -0.282 1.282 11 H -0.271 1.271 12 H -0.255 1.255 13 N -0.702 5.702 14 C 0.510 3.490 15 O -0.577 6.577 16 C -0.140 4.140 17 C 0.156 3.844 18 N -0.378 5.378 19 N -0.342 5.342 20 C 0.060 3.940 21 C -0.069 4.069 22 C -0.287 4.287 23 C 0.081 3.919 24 C -0.095 4.095 25 H 0.042 0.958 26 H 0.049 0.951 27 H 0.053 0.947 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.262 0.738 31 H 0.402 0.598 32 H 0.113 0.887 33 H 0.102 0.898 34 H 0.088 0.912 35 H 0.109 0.891 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.068 0.932 39 H 0.168 0.832 40 H 0.091 0.909 41 H 0.105 0.895 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.476 11.562 -13.546 22.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.168 4.168 3 C 0.151 3.849 4 H 0.043 0.957 5 C -0.665 4.665 6 H 0.059 0.941 7 C -0.197 4.197 8 N -0.549 5.549 9 Si 0.885 3.115 10 H -0.208 1.208 11 H -0.196 1.196 12 H -0.180 1.180 13 N -0.351 5.351 14 C 0.297 3.703 15 O -0.458 6.458 16 C -0.181 4.181 17 C 0.034 3.966 18 N -0.161 5.161 19 N -0.164 5.164 20 C -0.106 4.106 21 C -0.128 4.128 22 C -0.316 4.316 23 C -0.046 4.046 24 C -0.153 4.153 25 H 0.061 0.939 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.237 0.763 32 H 0.131 0.869 33 H 0.120 0.880 34 H 0.106 0.894 35 H 0.127 0.873 36 H 0.104 0.896 37 H 0.116 0.884 38 H 0.087 0.913 39 H 0.186 0.814 40 H 0.109 0.891 41 H 0.124 0.876 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -14.996 9.957 -10.809 20.997 hybrid contribution 0.930 0.764 -2.118 2.436 sum -14.066 10.720 -12.927 21.907 Atomic orbital electron populations 1.21769 0.95497 1.00303 1.01471 1.22137 0.95290 0.98578 1.00840 1.18708 0.93442 0.89425 0.83329 0.95688 1.22157 0.91523 1.48876 1.03981 0.94079 1.26694 0.96698 0.91195 1.05073 1.70963 1.15114 1.38807 1.30052 0.83774 0.75785 0.78448 0.73470 1.20769 1.19626 1.18000 1.46124 1.15533 1.56110 1.17300 1.20670 0.81678 0.78406 0.89573 1.90671 1.51206 1.61080 1.42882 1.21868 0.98058 1.02469 0.95677 1.21267 0.95013 0.99104 0.81241 1.48673 1.46868 1.07019 1.13502 1.77301 1.20022 1.22968 0.96156 1.22973 0.98481 0.91977 0.97178 1.20277 1.00549 1.03366 0.88567 1.21461 1.13125 1.00443 0.96540 1.21754 0.99493 0.86282 0.97039 1.20623 1.01271 0.95973 0.97418 0.93923 0.93205 0.92795 0.93079 0.93145 0.92927 0.76323 0.86889 0.88015 0.89397 0.87272 0.89576 0.88396 0.91344 0.81414 0.89062 0.87603 0.90848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.12 8.53 71.98 0.61 -4.50 16 2 C -0.13 -5.61 5.37 30.60 0.16 -5.45 16 3 C 0.26 11.76 1.84 44.25 0.08 11.84 16 4 H 0.03 1.25 6.12 -2.39 -0.01 1.24 16 5 C -0.63 -33.45 8.92 25.60 0.23 -33.22 16 6 H 0.04 2.31 7.96 -2.91 -0.02 2.29 16 7 C 0.01 0.35 5.15 84.66 0.44 0.79 16 8 N -0.92 -54.35 13.70 21.45 0.29 -54.05 16 9 Si 1.06 49.42 26.56 68.60 1.82 51.24 16 10 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 11 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 12 H -0.26 -11.07 6.34 99.48 0.63 -10.44 16 13 N -0.70 -26.49 5.03 -446.10 -2.24 -28.73 16 14 C 0.51 17.29 6.43 87.66 0.56 17.85 16 15 O -0.58 -22.82 13.13 -3.04 -0.04 -22.86 16 16 C -0.14 -3.50 6.02 29.85 0.18 -3.32 16 17 C 0.16 3.89 5.54 86.38 0.48 4.37 16 18 N -0.38 -9.64 3.61 -334.70 -1.21 -10.85 16 19 N -0.34 -9.71 12.58 -47.38 -0.60 -10.31 16 20 C 0.06 1.37 7.22 43.10 0.31 1.68 16 21 C -0.07 -1.02 10.45 71.24 0.74 -0.28 16 22 C -0.29 -5.78 10.65 21.99 0.23 -5.55 16 23 C 0.08 1.71 6.93 41.40 0.29 2.00 16 24 C -0.09 -1.32 10.12 71.24 0.72 -0.60 16 25 H 0.04 1.70 7.89 -2.39 -0.02 1.69 16 26 H 0.05 1.88 5.63 -2.39 -0.01 1.87 16 27 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 28 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.05 2.30 5.77 -2.39 -0.01 2.29 16 30 H 0.26 15.51 8.73 -92.71 -0.81 14.70 16 31 H 0.40 13.67 8.53 -92.71 -0.79 12.88 16 32 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 33 H 0.10 2.50 8.14 -2.39 -0.02 2.49 16 34 H 0.09 2.45 8.10 -2.39 -0.02 2.43 16 35 H 0.11 2.52 7.00 -2.39 -0.02 2.50 16 36 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.17 2.39 8.06 -2.91 -0.02 2.37 16 40 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 41 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.07 1.03 7.08 -2.39 -0.02 1.02 16 Total: -1.00 -68.04 342.44 3.18 -64.85 By element: Atomic # 1 Polarization: 24.98 SS G_CDS: 0.11 Total: 25.09 kcal Atomic # 6 Polarization: -19.44 SS G_CDS: 5.04 Total: -14.39 kcal Atomic # 7 Polarization: -100.19 SS G_CDS: -3.75 Total: -103.94 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: -0.04 Total: -22.86 kcal Atomic # 14 Polarization: 49.42 SS G_CDS: 1.82 Total: 51.24 kcal Total: -68.04 3.18 -64.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701309300.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.548 kcal (2) G-P(sol) polarization free energy of solvation -68.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds