Wall clock time and date at job start Tue Mar 31 2020 02:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47019 * 2 1 4 4 C 1.52999 * 109.47364 * 120.00294 * 2 1 3 5 5 N 1.46903 * 109.47075 * 179.48277 * 4 2 1 6 6 C 1.46901 * 110.99978 * 156.81134 * 5 4 2 7 7 C 1.50696 * 109.46968 * 288.18032 * 6 5 4 8 8 H 1.08001 * 120.00021 * 4.90188 * 7 6 5 9 9 C 1.37873 * 120.00039 * 184.89532 * 7 6 5 10 10 N 1.31513 * 119.99954 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 120.00275 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.46718 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.47012 * 119.99994 * 11 9 7 14 14 H 1.48497 * 109.47037 * 240.00073 * 11 9 7 15 15 C 1.46899 * 110.99613 * 280.76503 * 5 4 2 16 16 C 1.50696 * 109.47395 * 78.42858 * 15 5 4 17 17 N 1.29943 * 126.28745 * 255.71704 * 16 15 5 18 18 O 1.21302 * 110.24973 * 179.72726 * 17 16 15 19 19 C 1.33639 * 109.80982 * 0.47115 * 18 17 16 20 20 C 1.50705 * 126.55114 * 179.80086 * 19 18 17 21 21 C 1.52998 * 117.49680 * 59.68826 * 20 19 18 22 22 C 1.52995 * 60.03574 * 252.52612 * 21 20 19 23 23 N 1.31132 * 106.89869 * 359.53916 * 19 18 17 24 24 H 1.09006 * 109.46915 * 299.99809 * 1 2 3 25 25 H 1.08994 * 109.47166 * 59.99564 * 1 2 3 26 26 H 1.08995 * 109.47061 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46658 * 240.00289 * 2 1 3 28 28 H 1.08995 * 109.46953 * 304.93732 * 3 2 1 29 29 H 1.09000 * 109.46723 * 64.93727 * 3 2 1 30 30 H 1.09002 * 109.46954 * 184.93354 * 3 2 1 31 31 H 1.09003 * 109.47087 * 59.48048 * 4 2 1 32 32 H 1.09002 * 109.47068 * 299.47804 * 4 2 1 33 33 H 1.08999 * 109.47036 * 48.17999 * 6 5 4 34 34 H 1.09001 * 109.46908 * 168.17895 * 6 5 4 35 35 H 0.97008 * 120.00237 * 179.97438 * 10 9 7 36 36 H 1.09001 * 109.47414 * 318.42496 * 15 5 4 37 37 H 1.08999 * 109.46858 * 198.43129 * 15 5 4 38 38 H 1.09001 * 115.56134 * 205.37765 * 20 19 18 39 39 H 1.09007 * 117.50021 * 145.02347 * 21 20 19 40 40 H 1.08999 * 117.50320 * 0.02562 * 21 20 19 41 41 H 1.08992 * 117.50138 * 107.47752 * 22 21 20 42 42 H 1.09005 * 117.49621 * 252.48516 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5090 -0.7321 1.2429 6 6 4.0401 -0.8946 2.6028 7 6 3.8190 0.3753 3.3835 8 1 3.2630 1.1899 2.9433 9 6 4.3262 0.4971 4.6598 10 7 5.0035 -0.4947 5.1956 11 14 4.0514 2.0709 5.6278 12 1 3.2644 3.0259 4.8069 13 1 3.3077 1.7613 6.8753 14 1 5.3632 2.6764 5.9709 15 6 4.0239 -1.7773 0.3482 16 6 3.9352 -1.3046 -1.0799 17 7 3.0597 -1.6833 -1.9624 18 8 3.2534 -1.1153 -3.0165 19 6 4.3090 -0.3031 -2.9061 20 6 4.8814 0.5767 -3.9875 21 6 3.9629 1.6397 -4.5933 22 6 4.3353 0.3984 -5.4064 23 7 4.7480 -0.4138 -1.6754 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8932 -0.5138 -0.8900 28 1 1.6062 1.9812 -0.8424 29 1 1.7506 1.9302 0.9309 30 1 3.1264 1.4438 -0.0884 31 1 1.6691 -1.7463 1.2538 32 1 1.6844 -0.2021 2.1392 33 1 3.5266 -1.7192 3.0973 34 1 5.1077 -1.1091 2.5528 35 1 5.3607 -0.4089 6.0934 36 1 3.4302 -2.6835 0.4686 37 1 5.0638 -1.9887 0.5971 38 1 5.9375 0.8251 -3.8818 39 1 4.4146 2.5876 -4.8863 40 1 2.9447 1.7031 -4.2095 41 1 3.5624 -0.3551 -5.5571 42 1 5.0320 0.5296 -6.2345 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739913643.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:41:27 Heat of formation + Delta-G solvation = 98.174822 kcal Electronic energy + Delta-G solvation = -22657.973505 eV Core-core repulsion = 19449.593616 eV Total energy + Delta-G solvation = -3208.379889 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -45.36865 -37.85665 -37.60322 -35.37459 -34.01418 -32.56149 -31.77333 -28.05087 -26.66318 -26.53283 -24.91925 -24.40021 -22.91298 -22.65818 -20.99044 -20.23130 -19.52094 -17.79097 -17.31163 -16.44144 -16.30186 -15.13992 -14.95473 -14.57012 -14.31391 -13.99773 -13.51758 -13.18099 -12.94704 -12.49942 -12.25781 -12.08889 -11.91177 -11.82483 -11.78243 -11.55417 -11.49990 -11.08153 -10.93917 -10.90021 -10.82781 -10.65675 -10.62014 -10.44922 -10.25543 -10.06298 -9.76835 -9.32766 -9.05816 -8.43694 -7.36453 -6.02395 -4.02852 1.30817 2.50184 2.88834 3.31877 3.39387 3.42898 3.44692 3.83392 4.23226 4.43478 4.45518 4.56585 4.77654 4.98999 5.24810 5.30875 5.34032 5.38645 5.46517 5.48896 5.68264 5.70667 5.74988 5.76994 5.89085 5.97845 6.08673 6.10680 6.24262 6.31105 6.32689 6.43507 6.51146 6.58859 6.90957 6.98882 7.20684 7.26593 7.79283 8.03851 8.14826 8.46846 8.48885 9.04359 9.60903 11.08502 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.020468 B = 0.004670 C = 0.004565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.687848 B = 5994.395877 C = 6132.779986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.107 4.107 3 C -0.130 4.130 4 C 0.066 3.934 5 N -0.522 5.522 6 C 0.195 3.805 7 C -0.500 4.500 8 H 0.065 0.935 9 C 0.056 3.944 10 N -0.899 5.899 11 Si 0.897 3.103 12 H -0.272 1.272 13 H -0.285 1.285 14 H -0.284 1.284 15 C 0.136 3.864 16 C 0.207 3.793 17 N -0.388 5.388 18 O 0.066 5.934 19 C 0.191 3.809 20 C -0.072 4.072 21 C -0.154 4.154 22 C -0.162 4.162 23 N -0.452 5.452 24 H 0.053 0.947 25 H 0.046 0.954 26 H 0.047 0.953 27 H 0.069 0.931 28 H 0.030 0.970 29 H 0.052 0.948 30 H 0.067 0.933 31 H 0.022 0.978 32 H 0.085 0.915 33 H -0.008 1.008 34 H 0.036 0.964 35 H 0.260 0.740 36 H 0.055 0.945 37 H 0.099 0.901 38 H 0.147 0.853 39 H 0.112 0.888 40 H 0.102 0.898 41 H 0.105 0.895 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.097 1.182 -19.311 19.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.126 4.126 3 C -0.187 4.187 4 C -0.062 4.062 5 N -0.247 5.247 6 C 0.071 3.929 7 C -0.539 4.539 8 H 0.083 0.917 9 C -0.145 4.145 10 N -0.539 5.539 11 Si 0.725 3.275 12 H -0.197 1.197 13 H -0.212 1.212 14 H -0.210 1.210 15 C 0.006 3.994 16 C -0.066 4.066 17 N -0.098 5.098 18 O 0.010 5.990 19 C -0.029 4.029 20 C -0.092 4.092 21 C -0.192 4.192 22 C -0.200 4.200 23 N -0.185 5.185 24 H 0.072 0.928 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.087 0.913 28 H 0.049 0.951 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.040 0.960 32 H 0.104 0.896 33 H 0.009 0.991 34 H 0.054 0.946 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.117 0.883 38 H 0.165 0.835 39 H 0.130 0.870 40 H 0.121 0.879 41 H 0.124 0.876 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -3.187 1.067 -18.753 19.051 hybrid contribution -0.301 0.095 0.906 0.959 sum -3.487 1.162 -17.847 18.221 Atomic orbital electron populations 1.21769 0.96126 1.00926 1.01073 1.21426 0.94462 0.97478 0.99252 1.21628 1.02237 0.94892 0.99958 1.22185 0.88072 0.97675 0.98270 1.61921 1.06940 1.43466 1.12356 1.19808 0.95339 0.96776 0.80972 1.21147 1.34010 1.00558 0.98204 0.91709 1.24959 0.95284 0.96624 0.97664 1.69963 1.36721 1.31462 1.15755 0.86457 0.77906 0.83427 0.79744 1.19672 1.21176 1.21015 1.20402 1.02553 0.93190 0.83260 1.25947 0.88317 0.92890 0.99479 1.74590 1.22737 1.19035 0.93460 1.85216 1.41040 1.42739 1.30054 1.27625 0.87055 0.94172 0.94075 1.20233 0.99924 0.99635 0.89451 1.23143 1.00369 0.94002 1.01720 1.23156 1.03666 1.00775 0.92354 1.71905 1.26890 1.16652 1.03009 0.92774 0.93478 0.93350 0.91335 0.95124 0.92868 0.91386 0.96028 0.89632 0.99067 0.94576 0.92992 0.92726 0.88295 0.83493 0.86995 0.87940 0.87627 0.87129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.19 37.16 0.34 -1.81 16 2 C -0.11 -1.91 2.64 -90.62 -0.24 -2.15 16 3 C -0.13 -2.36 8.97 37.16 0.33 -2.03 16 4 C 0.07 1.34 4.26 -3.82 -0.02 1.32 16 5 N -0.52 -11.37 3.70 -237.52 -0.88 -12.25 16 6 C 0.20 5.02 4.71 -4.98 -0.02 5.00 16 7 C -0.50 -13.94 8.39 -34.44 -0.29 -14.23 16 8 H 0.06 1.81 7.58 -52.49 -0.40 1.41 16 9 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 10 N -0.90 -26.55 13.29 55.43 0.74 -25.82 16 11 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 12 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 13 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 14 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 15 C 0.14 2.62 5.65 -4.98 -0.03 2.59 16 16 C 0.21 3.75 5.95 -156.38 -0.93 2.82 16 17 N -0.39 -6.63 10.07 30.89 0.31 -6.32 16 18 O 0.07 0.99 11.08 18.11 0.20 1.19 16 19 C 0.19 2.69 7.97 -13.05 -0.10 2.58 16 20 C -0.07 -0.68 6.34 -91.73 -0.58 -1.26 16 21 C -0.15 -1.14 10.23 -26.73 -0.27 -1.42 16 22 C -0.16 -1.07 10.18 -26.69 -0.27 -1.34 16 23 N -0.45 -7.93 11.55 -9.87 -0.11 -8.04 16 24 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.07 1.25 4.01 -51.93 -0.21 1.04 16 28 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.07 1.39 7.77 -51.93 -0.40 0.99 16 31 H 0.02 0.42 7.63 -51.93 -0.40 0.03 16 32 H 0.09 1.88 6.95 -51.93 -0.36 1.52 16 33 H -0.01 -0.23 8.05 -51.93 -0.42 -0.65 16 34 H 0.04 0.99 7.66 -51.93 -0.40 0.59 16 35 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 36 H 0.05 1.00 7.63 -51.93 -0.40 0.60 16 37 H 0.10 1.88 7.60 -51.93 -0.39 1.49 16 38 H 0.15 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.11 0.72 8.01 -51.93 -0.42 0.31 16 42 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 344.97 15.07 5.20 5.20 Total: -1.00 -31.01 344.97 -8.48 -39.48 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -6.73 Total: -1.73 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: -2.18 Total: -8.43 kcal Atomic # 7 Polarization: -52.49 SS G_CDS: 0.06 Total: -52.43 kcal Atomic # 8 Polarization: 0.99 SS G_CDS: 0.20 Total: 1.19 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.01 -8.48 -39.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739913643.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.658 kcal (2) G-P(sol) polarization free energy of solvation -31.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds