Wall clock time and date at job start Tue Mar 31 2020 01:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47046 * 2 1 4 4 C 1.53002 * 109.47262 * 120.00080 * 2 1 3 5 5 C 1.52994 * 109.47463 * 67.69619 * 4 2 1 6 6 C 1.53001 * 109.47489 * 172.41629 * 5 4 2 7 7 C 1.52999 * 109.47291 * 52.41300 * 5 4 2 8 8 C 1.50707 * 109.47170 * 292.41654 * 5 4 2 9 9 O 1.21306 * 119.99777 * 324.69870 * 8 5 4 10 10 N 1.34775 * 120.00134 * 144.96940 * 8 5 4 11 11 C 1.40594 * 120.00098 * 179.72850 * 10 8 5 12 12 C 1.40642 * 126.08143 * 359.68821 * 11 10 8 13 13 N 1.30907 * 108.38978 * 179.88127 * 12 11 10 14 14 N 1.40068 * 108.40597 * 0.38045 * 13 12 11 15 15 C 1.37315 * 126.07157 * 179.73388 * 14 13 12 16 16 H 1.08004 * 119.99901 * 180.02562 * 15 14 13 17 17 C 1.38984 * 119.99970 * 0.02946 * 15 14 13 18 18 N 1.31294 * 120.00342 * 359.97438 * 17 15 14 19 19 Si 1.86808 * 119.99866 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47049 * 89.99924 * 19 17 15 21 21 H 1.48498 * 109.46991 * 209.99619 * 19 17 15 22 22 H 1.48493 * 109.47240 * 330.00067 * 19 17 15 23 23 C 1.35680 * 126.08384 * 179.97438 * 11 10 8 24 24 H 1.09003 * 109.47081 * 286.55741 * 1 2 3 25 25 H 1.08990 * 109.47019 * 46.56303 * 1 2 3 26 26 H 1.09002 * 109.46609 * 166.56233 * 1 2 3 27 27 H 1.09003 * 109.47574 * 239.99906 * 2 1 3 28 28 H 1.08996 * 109.47358 * 179.97438 * 3 2 1 29 29 H 1.08995 * 109.46958 * 300.00482 * 3 2 1 30 30 H 1.09009 * 109.46725 * 59.99911 * 3 2 1 31 31 H 1.09009 * 109.46948 * 307.69492 * 4 2 1 32 32 H 1.09001 * 109.47211 * 187.69815 * 4 2 1 33 33 H 1.08999 * 109.46944 * 179.97438 * 6 5 4 34 34 H 1.08993 * 109.46929 * 300.00214 * 6 5 4 35 35 H 1.08998 * 109.46683 * 60.00201 * 6 5 4 36 36 H 1.09005 * 109.47286 * 286.67426 * 7 5 4 37 37 H 1.09006 * 109.46970 * 46.66431 * 7 5 4 38 38 H 1.08997 * 109.47810 * 166.66588 * 7 5 4 39 39 H 0.97001 * 120.00046 * 359.72178 * 10 8 5 40 40 H 1.08005 * 125.81076 * 0.02562 * 12 11 10 41 41 H 0.96998 * 120.00538 * 180.02562 * 18 17 15 42 42 H 1.08001 * 126.24448 * 359.93004 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6940 -2.2087 1.1565 6 6 2.3646 -2.9612 2.3075 7 6 2.1941 -2.7665 -0.1775 8 6 0.1997 -2.3833 1.2452 9 8 -0.4551 -1.6518 1.9578 10 7 -0.4085 -3.3555 0.5372 11 6 -1.8018 -3.5220 0.6244 12 6 -2.6800 -2.7550 1.4108 13 7 -3.8962 -3.2039 1.2289 14 7 -3.8419 -4.2765 0.3298 15 6 -4.9110 -5.0172 -0.1106 16 1 -4.7561 -5.8274 -0.8078 17 6 -6.1925 -4.7242 0.3407 18 7 -6.3809 -3.7396 1.1886 19 14 -7.6470 -5.7314 -0.2591 20 1 -7.8588 -6.8856 0.6510 21 1 -8.8651 -4.8821 -0.2730 22 1 -7.3734 -6.2272 -1.6318 23 6 -2.5377 -4.4548 -0.0308 24 1 -0.3633 0.2929 0.9851 25 1 -0.3633 0.7065 -0.7462 26 1 -0.3632 -0.9996 -0.2388 27 1 1.8934 -0.5138 -0.8900 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9563 -0.8899 30 1 1.6766 1.9563 0.8901 31 1 1.5687 -0.2930 2.1340 32 1 3.1213 -0.6036 1.3207 33 1 2.1176 -4.0208 2.2416 34 1 3.4453 -2.8349 2.2433 35 1 2.0081 -2.5638 3.2578 36 1 1.5557 -2.4063 -0.9843 37 1 3.2182 -2.4347 -0.3490 38 1 2.1650 -3.8557 -0.1498 39 1 0.1151 -3.9403 -0.0327 40 1 -2.3992 -1.9336 2.0534 41 1 -7.2751 -3.5353 1.5038 42 1 -2.1603 -5.2018 -0.7135 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000753291352.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:30:59 Heat of formation + Delta-G solvation = 28.435116 kcal Electronic energy + Delta-G solvation = -22616.648679 eV Core-core repulsion = 19405.244650 eV Total energy + Delta-G solvation = -3211.404030 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.45514 -39.14740 -36.41970 -34.31033 -33.74609 -32.90130 -30.16937 -27.91732 -27.31475 -26.82480 -26.44223 -24.93824 -22.82603 -20.84443 -20.21414 -19.39917 -18.65933 -17.27375 -16.57748 -15.44035 -15.41484 -15.22462 -14.80763 -14.08145 -13.98664 -13.58300 -13.43440 -12.93936 -12.91914 -12.76136 -12.62280 -12.29331 -12.11523 -11.86444 -11.65151 -11.52588 -11.39524 -11.35284 -11.23043 -10.97685 -10.88845 -10.56729 -10.51394 -10.33781 -10.27587 -9.85629 -9.09690 -8.90072 -8.72981 -8.00380 -6.62306 -6.51851 -4.18316 2.91529 3.06827 3.10881 3.12190 3.69260 3.73969 3.93061 4.48456 4.59179 4.75286 4.86871 4.97194 5.06026 5.10052 5.23186 5.23844 5.50127 5.52320 5.63864 5.71041 5.75194 5.85059 5.89275 5.91650 6.04103 6.06941 6.13946 6.20945 6.28628 6.32218 6.37241 6.52973 6.54566 6.80468 6.96657 7.03222 7.21492 7.32490 7.90810 8.26973 8.37447 8.70229 8.99095 9.43159 9.73014 10.44248 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.032131 B = 0.004019 C = 0.003849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.217530 B = 6965.073350 C = 7272.791461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.100 4.100 3 C -0.144 4.144 4 C -0.094 4.094 5 C -0.078 4.078 6 C -0.135 4.135 7 C -0.152 4.152 8 C 0.515 3.485 9 O -0.534 6.534 10 N -0.629 5.629 11 C -0.056 4.056 12 C -0.034 4.034 13 N -0.261 5.261 14 N -0.144 5.144 15 C -0.324 4.324 16 H 0.115 0.885 17 C 0.047 3.953 18 N -0.771 5.771 19 Si 0.933 3.067 20 H -0.271 1.271 21 H -0.276 1.276 22 H -0.264 1.264 23 C -0.086 4.086 24 H 0.071 0.929 25 H 0.041 0.959 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.049 0.951 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.077 0.923 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.059 0.941 39 H 0.395 0.605 40 H 0.175 0.825 41 H 0.274 0.726 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.014 2.110 -3.206 16.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.118 4.118 3 C -0.202 4.202 4 C -0.131 4.131 5 C -0.082 4.082 6 C -0.193 4.193 7 C -0.210 4.210 8 C 0.302 3.698 9 O -0.412 6.412 10 N -0.272 5.272 11 C -0.162 4.162 12 C -0.209 4.209 13 N -0.092 5.092 14 N 0.088 4.912 15 C -0.456 4.456 16 H 0.133 0.867 17 C -0.170 4.170 18 N -0.398 5.398 19 Si 0.757 3.243 20 H -0.196 1.196 21 H -0.201 1.201 22 H -0.189 1.189 23 C -0.237 4.237 24 H 0.090 0.910 25 H 0.060 0.940 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.096 0.904 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.228 0.772 40 H 0.192 0.808 41 H 0.085 0.915 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 14.119 2.892 -2.256 14.587 hybrid contribution 0.517 -0.972 -0.895 1.419 sum 14.636 1.920 -3.151 15.094 Atomic orbital electron populations 1.22202 0.94119 1.02022 1.02587 1.21220 0.96866 0.95755 0.97976 1.21824 1.00184 0.96428 1.01717 1.21606 1.00233 0.92065 0.99228 1.20747 0.92616 0.97758 0.97059 1.21778 1.00092 0.99926 0.97519 1.22048 1.01857 1.00830 0.96240 1.20046 0.89030 0.80390 0.80361 1.90572 1.65710 1.44609 1.40269 1.42703 1.05869 1.33182 1.45412 1.17298 0.82448 1.05513 1.10919 1.24091 0.89854 1.03187 1.03775 1.78239 1.18180 1.01945 1.10865 1.44515 1.03299 1.18668 1.24700 1.19844 0.84077 1.13937 1.27776 0.86745 1.25618 0.99318 0.96473 0.95610 1.70217 1.23045 1.23251 1.23271 0.85852 0.79688 0.79261 0.79482 1.19633 1.20113 1.18853 1.21258 0.85882 1.06152 1.10429 0.90970 0.94039 0.92011 0.91364 0.93176 0.92965 0.92706 0.90411 0.91711 0.92258 0.91825 0.91797 0.91605 0.91643 0.92166 0.77162 0.80787 0.91544 0.83925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 7.57 37.16 0.28 -2.09 16 2 C -0.10 -1.20 2.60 -90.62 -0.24 -1.44 16 3 C -0.14 -1.50 9.15 37.16 0.34 -1.16 16 4 C -0.09 -1.11 3.78 -26.73 -0.10 -1.21 16 5 C -0.08 -0.96 0.77 -155.66 -0.12 -1.08 16 6 C -0.14 -1.49 8.41 37.16 0.31 -1.17 16 7 C -0.15 -1.49 6.41 37.16 0.24 -1.25 16 8 C 0.52 8.78 3.66 -10.98 -0.04 8.74 16 9 O -0.53 -11.05 10.76 5.53 0.06 -10.99 16 10 N -0.63 -11.20 5.11 -10.00 -0.05 -11.25 16 11 C -0.06 -1.30 6.90 -83.84 -0.58 -1.88 16 12 C -0.03 -0.89 10.85 -17.04 -0.18 -1.07 16 13 N -0.26 -7.68 10.40 30.80 0.32 -7.36 16 14 N -0.14 -3.99 3.74 -11.41 -0.04 -4.04 16 15 C -0.32 -8.69 10.25 -14.82 -0.15 -8.84 16 16 H 0.11 2.74 7.83 -52.48 -0.41 2.33 16 17 C 0.05 1.22 5.50 -17.50 -0.10 1.12 16 18 N -0.77 -21.82 11.81 55.49 0.66 -21.16 16 19 Si 0.93 19.14 29.55 -169.99 -5.02 14.12 16 20 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 21 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 22 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 23 C -0.09 -2.06 11.49 -16.39 -0.19 -2.25 16 24 H 0.07 1.27 6.68 -51.93 -0.35 0.92 16 25 H 0.04 0.61 8.07 -51.93 -0.42 0.19 16 26 H 0.06 1.10 5.53 -51.93 -0.29 0.81 16 27 H 0.07 0.76 6.18 -51.93 -0.32 0.44 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.59 8.14 -51.92 -0.42 0.16 16 31 H 0.08 1.06 7.47 -51.92 -0.39 0.68 16 32 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.69 6.90 -51.93 -0.36 0.33 16 37 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 38 H 0.06 0.52 7.48 -51.93 -0.39 0.13 16 39 H 0.39 5.66 7.06 -40.82 -0.29 5.38 16 40 H 0.18 4.59 5.92 -52.48 -0.31 4.28 16 41 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 42 H 0.14 2.85 8.06 -52.49 -0.42 2.43 16 LS Contribution 330.57 15.07 4.98 4.98 Total: -1.00 -32.30 330.57 -6.08 -38.38 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: -6.45 Total: 10.90 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: -0.52 Total: -13.59 kcal Atomic # 7 Polarization: -44.69 SS G_CDS: 0.88 Total: -43.80 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.06 Total: -10.99 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.02 Total: 14.12 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.30 -6.08 -38.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753291352.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.817 kcal (2) G-P(sol) polarization free energy of solvation -32.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds