Wall clock time and date at job start Tue Mar 31 2020 02:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46952 * 2 1 4 4 C 1.52996 * 109.47258 * 181.46383 * 3 2 1 5 5 H 1.08998 * 109.46905 * 53.11298 * 4 3 2 6 6 C 1.50692 * 109.47322 * 173.11898 * 4 3 2 7 7 O 1.21305 * 120.00283 * 25.75682 * 6 4 3 8 8 N 1.34775 * 120.00092 * 205.76146 * 6 4 3 9 9 C 1.40596 * 120.00378 * 175.04501 * 8 6 4 10 10 C 1.40648 * 126.08065 * 359.97438 * 9 8 6 11 11 N 1.30902 * 108.38809 * 179.77703 * 10 9 8 12 12 N 1.40061 * 108.41057 * 0.38054 * 11 10 9 13 13 C 1.37323 * 126.07657 * 179.87623 * 12 11 10 14 14 H 1.07999 * 120.00521 * 179.68718 * 13 12 11 15 15 C 1.38987 * 119.99377 * 359.41896 * 13 12 11 16 16 N 1.31292 * 120.00416 * 0.27461 * 15 13 12 17 17 Si 1.86799 * 119.99688 * 180.27242 * 15 13 12 18 18 H 1.48504 * 109.47028 * 90.00165 * 17 15 13 19 19 H 1.48503 * 109.47115 * 210.00064 * 17 15 13 20 20 H 1.48500 * 109.47294 * 329.99799 * 17 15 13 21 21 C 1.35680 * 126.08363 * 180.02562 * 9 8 6 22 22 C 1.53004 * 109.47004 * 293.11888 * 4 3 2 23 23 C 1.53001 * 109.47124 * 175.21666 * 22 4 3 24 24 C 1.52999 * 109.46816 * 295.21603 * 22 4 3 25 25 H 1.08993 * 109.47046 * 299.99541 * 1 2 3 26 26 H 1.08992 * 109.47011 * 60.00246 * 1 2 3 27 27 H 1.09004 * 109.46663 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47122 * 240.00265 * 2 1 3 29 29 H 1.08997 * 109.47383 * 120.00016 * 2 1 3 30 30 H 1.09005 * 109.46753 * 61.46419 * 3 2 1 31 31 H 1.09001 * 109.46927 * 301.46560 * 3 2 1 32 32 H 0.97003 * 120.00041 * 355.04844 * 8 6 4 33 33 H 1.08004 * 125.80465 * 0.02562 * 10 9 8 34 34 H 0.97001 * 120.00068 * 179.97438 * 16 15 13 35 35 H 1.07992 * 126.24995 * 359.97438 * 21 9 8 36 36 H 1.09000 * 109.47063 * 55.21686 * 22 4 3 37 37 H 1.09007 * 109.47066 * 56.51420 * 23 22 4 38 38 H 1.08992 * 109.47446 * 176.51641 * 23 22 4 39 39 H 1.08998 * 109.47217 * 296.51802 * 23 22 4 40 40 H 1.08999 * 109.47247 * 64.27248 * 24 22 4 41 41 H 1.09004 * 109.47010 * 184.26434 * 24 22 4 42 42 H 1.08996 * 109.47480 * 304.26552 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5695 1.4428 -0.0368 5 1 3.9129 0.8330 -0.8725 6 6 4.0677 2.8547 -0.2071 7 8 3.3865 3.7872 0.1643 8 7 5.2701 3.0816 -0.7721 9 6 5.6902 4.3990 -1.0262 10 6 4.9625 5.5693 -0.7448 11 7 5.6785 6.6002 -1.1167 12 7 6.8828 6.1309 -1.6561 13 6 7.8992 6.9048 -2.1598 14 1 8.7918 6.4376 -2.5490 15 6 7.7769 8.2892 -2.1738 16 7 6.6919 8.8572 -1.7006 17 14 9.1562 9.3417 -2.8659 18 1 8.9342 9.5559 -4.3186 19 1 9.1754 10.6532 -2.1694 20 1 10.4556 8.6529 -2.6599 21 6 6.8692 4.7676 -1.5874 22 6 4.1113 0.8652 1.2723 23 6 5.6350 0.7545 1.1890 24 6 3.7295 1.7864 2.4327 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 1.6982 1.9487 0.9029 31 1 1.6553 1.9639 -0.8766 32 1 5.8457 2.3359 -1.0034 33 1 3.9818 5.6106 -0.2944 34 1 6.6067 9.8235 -1.7100 35 1 7.6538 4.1038 -1.9190 36 1 3.6837 -0.1237 1.4376 37 1 6.0585 1.7330 0.9622 38 1 6.0264 0.4015 2.1430 39 1 5.9057 0.0503 0.4023 40 1 2.6450 1.8054 2.5399 41 1 4.1791 1.4158 3.3539 42 1 4.0925 2.7942 2.2311 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764009353.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:30:30 Heat of formation + Delta-G solvation = -1.403334 kcal Electronic energy + Delta-G solvation = -22092.015720 eV Core-core repulsion = 18879.317798 eV Total energy + Delta-G solvation = -3212.697922 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.82349 -40.73253 -37.63014 -35.91284 -35.04100 -34.48033 -32.23732 -30.52794 -29.51723 -28.02972 -26.90101 -25.36930 -22.93421 -22.83058 -22.15442 -21.17332 -20.08038 -19.23803 -17.67125 -17.37918 -16.89781 -16.79502 -16.13911 -15.76057 -15.39708 -15.05720 -14.91390 -14.66614 -14.43395 -14.23350 -13.82906 -13.48814 -13.30298 -13.22193 -12.90572 -12.84819 -12.83765 -12.79031 -12.32788 -12.09244 -11.98597 -11.78347 -11.73989 -11.64068 -11.41573 -11.18610 -10.97338 -10.81615 -10.39731 -10.09076 -8.49102 -8.46638 -6.23564 1.24277 1.39280 1.56536 1.58508 1.89603 2.07690 2.36763 2.55801 2.94322 3.09274 3.71322 3.82683 3.90360 4.19398 4.24460 4.36181 4.41751 4.44335 4.62491 4.63304 4.67747 4.75740 4.84342 4.93110 5.00390 5.01953 5.05784 5.08813 5.11641 5.17299 5.24220 5.30496 5.31557 5.42400 5.44922 5.49347 5.56776 5.60914 5.96789 6.34034 6.74978 6.83412 7.45766 7.51414 7.70304 8.52897 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.035402 B = 0.003562 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.728666 B = 7858.095608 C = 8165.992435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.116 4.116 3 C -0.102 4.102 4 C -0.089 4.089 5 H 0.117 0.883 6 C 0.504 3.496 7 O -0.577 6.577 8 N -0.620 5.620 9 C -0.041 4.041 10 C -0.063 4.063 11 N -0.310 5.310 12 N -0.169 5.169 13 C -0.355 4.355 14 H 0.141 0.859 15 C -0.008 4.008 16 N -0.826 5.826 17 Si 1.020 2.980 18 H -0.264 1.264 19 H -0.277 1.277 20 H -0.244 1.244 21 C -0.084 4.084 22 C -0.076 4.076 23 C -0.162 4.162 24 C -0.153 4.153 25 H 0.048 0.952 26 H 0.046 0.954 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.058 0.942 31 H 0.045 0.955 32 H 0.416 0.584 33 H 0.164 0.836 34 H 0.276 0.724 35 H 0.186 0.814 36 H 0.114 0.886 37 H 0.037 0.963 38 H 0.067 0.933 39 H 0.083 0.917 40 H 0.058 0.942 41 H 0.066 0.934 42 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.497 -20.006 2.390 20.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.154 4.154 3 C -0.140 4.140 4 C -0.110 4.110 5 H 0.135 0.865 6 C 0.293 3.707 7 O -0.457 6.457 8 N -0.265 5.265 9 C -0.147 4.147 10 C -0.238 4.238 11 N -0.143 5.143 12 N 0.062 4.938 13 C -0.486 4.486 14 H 0.158 0.842 15 C -0.219 4.219 16 N -0.454 5.454 17 Si 0.839 3.161 18 H -0.189 1.189 19 H -0.202 1.202 20 H -0.167 1.167 21 C -0.234 4.234 22 C -0.095 4.095 23 C -0.219 4.219 24 C -0.210 4.210 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.087 0.913 28 H 0.093 0.907 29 H 0.098 0.902 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.254 0.746 33 H 0.181 0.819 34 H 0.085 0.915 35 H 0.203 0.797 36 H 0.132 0.868 37 H 0.056 0.944 38 H 0.086 0.914 39 H 0.102 0.898 40 H 0.077 0.923 41 H 0.085 0.915 42 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -3.042 -17.894 2.604 18.337 hybrid contribution 0.408 0.018 -0.205 0.457 sum -2.634 -17.876 2.399 18.227 Atomic orbital electron populations 1.21783 0.95844 1.02141 1.01427 1.21554 0.95900 0.94583 1.03315 1.21462 0.92217 0.98379 1.01915 1.21481 0.97517 0.90515 1.01495 0.86514 1.21399 0.80171 0.92740 0.76389 1.90570 1.57658 1.46857 1.50593 1.42757 1.18753 1.04801 1.60206 1.17399 0.96542 0.85546 1.15214 1.24108 1.01572 0.90150 1.07973 1.78127 0.94183 1.21641 1.20334 1.44831 1.11243 1.03528 1.34222 1.20615 0.96924 0.89538 1.41490 0.84193 1.26897 1.00559 0.98663 0.95796 1.70408 1.27264 1.11731 1.36032 0.84585 0.76877 0.76551 0.78125 1.18858 1.20250 1.16664 1.21995 1.01014 0.85915 1.14503 1.21109 0.96548 1.00157 0.91662 1.22079 0.94481 1.01856 1.03528 1.21939 1.01645 0.98676 0.98757 0.93252 0.93508 0.91310 0.90703 0.90209 0.92296 0.93647 0.74637 0.81905 0.91468 0.79654 0.86807 0.94350 0.91384 0.89848 0.92302 0.91456 0.95825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.91 71.98 0.71 -1.60 16 2 C -0.12 -1.72 5.69 30.60 0.17 -1.55 16 3 C -0.10 -2.28 3.99 30.59 0.12 -2.16 16 4 C -0.09 -1.98 1.96 -11.54 -0.02 -2.00 16 5 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 6 C 0.50 17.36 5.16 87.65 0.45 17.81 16 7 O -0.58 -25.59 12.61 -3.11 -0.04 -25.63 16 8 N -0.62 -21.64 4.48 -303.93 -1.36 -23.00 16 9 C -0.04 -1.92 6.90 37.73 0.26 -1.66 16 10 C -0.06 -3.55 10.85 85.42 0.93 -2.62 16 11 N -0.31 -19.26 10.40 -56.47 -0.59 -19.85 16 12 N -0.17 -9.59 3.74 -190.01 -0.71 -10.30 16 13 C -0.35 -19.13 10.25 84.01 0.86 -18.27 16 14 H 0.14 6.52 7.83 -2.91 -0.02 6.50 16 15 C -0.01 -0.42 5.50 84.95 0.47 0.05 16 16 N -0.83 -48.73 11.81 21.66 0.26 -48.47 16 17 Si 1.02 39.21 29.55 68.60 2.03 41.24 16 18 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 19 H -0.28 -10.58 7.11 99.48 0.71 -9.88 16 20 H -0.24 -8.46 7.11 99.48 0.71 -7.75 16 21 C -0.08 -3.98 11.49 83.37 0.96 -3.02 16 22 C -0.08 -1.40 2.58 -10.79 -0.03 -1.43 16 23 C -0.16 -2.80 8.69 71.98 0.63 -2.17 16 24 C -0.15 -3.66 8.54 71.98 0.61 -3.05 16 25 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 28 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 29 H 0.08 0.95 6.60 -2.39 -0.02 0.94 16 30 H 0.06 1.53 6.29 -2.38 -0.01 1.51 16 31 H 0.04 1.19 8.13 -2.39 -0.02 1.17 16 32 H 0.42 10.80 7.87 -92.71 -0.73 10.07 16 33 H 0.16 9.35 5.94 -2.91 -0.02 9.34 16 34 H 0.28 14.95 8.31 -92.71 -0.77 14.18 16 35 H 0.19 6.91 8.06 -2.91 -0.02 6.89 16 36 H 0.11 1.43 6.46 -2.39 -0.02 1.42 16 37 H 0.04 0.88 5.97 -2.38 -0.01 0.86 16 38 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.06 1.37 6.62 -2.39 -0.02 1.36 16 41 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 42 H 0.02 0.75 6.44 -2.39 -0.02 0.74 16 Total: -1.00 -76.92 335.06 6.00 -70.92 By element: Atomic # 1 Polarization: 36.49 SS G_CDS: 0.29 Total: 36.78 kcal Atomic # 6 Polarization: -27.80 SS G_CDS: 6.13 Total: -21.68 kcal Atomic # 7 Polarization: -99.23 SS G_CDS: -2.40 Total: -101.63 kcal Atomic # 8 Polarization: -25.59 SS G_CDS: -0.04 Total: -25.63 kcal Atomic # 14 Polarization: 39.21 SS G_CDS: 2.03 Total: 41.24 kcal Total: -76.92 6.00 -70.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764009353.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.512 kcal (2) G-P(sol) polarization free energy of solvation -76.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds