Wall clock time and date at job start Tue Mar 31 2020 02:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47182 * 2 1 4 4 C 1.52995 * 109.47107 * 183.31051 * 3 2 1 5 5 H 1.09000 * 109.47574 * 306.42101 * 4 3 2 6 6 C 1.50694 * 109.47352 * 186.41249 * 4 3 2 7 7 O 1.21305 * 119.99925 * 350.04518 * 6 4 3 8 8 N 1.34779 * 120.00278 * 170.04393 * 6 4 3 9 9 C 1.40597 * 119.99687 * 177.27132 * 8 6 4 10 10 C 1.40644 * 126.08650 * 359.97438 * 9 8 6 11 11 N 1.30911 * 108.39004 * 179.77845 * 10 9 8 12 12 N 1.40076 * 108.40201 * 0.38209 * 11 10 9 13 13 C 1.37320 * 126.06529 * 179.87830 * 12 11 10 14 14 H 1.07998 * 120.00053 * 179.69019 * 13 12 11 15 15 C 1.38988 * 120.00323 * 359.41216 * 13 12 11 16 16 N 1.31298 * 119.99718 * 0.27878 * 15 13 12 17 17 Si 1.86801 * 120.00249 * 180.27272 * 15 13 12 18 18 H 1.48508 * 109.46714 * 90.00460 * 17 15 13 19 19 H 1.48498 * 109.47054 * 210.00324 * 17 15 13 20 20 H 1.48494 * 109.47076 * 330.00720 * 17 15 13 21 21 C 1.35685 * 126.07631 * 180.02562 * 9 8 6 22 22 C 1.53002 * 109.46974 * 66.41300 * 4 3 2 23 23 C 1.53005 * 109.46963 * 59.68457 * 22 4 3 24 24 C 1.53000 * 109.47535 * 179.68514 * 22 4 3 25 25 H 1.08997 * 109.47085 * 299.99388 * 1 2 3 26 26 H 1.08999 * 109.47509 * 59.99792 * 1 2 3 27 27 H 1.08997 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46606 * 240.00373 * 2 1 3 29 29 H 1.08995 * 109.47290 * 120.00926 * 2 1 3 30 30 H 1.09006 * 109.46729 * 63.31673 * 3 2 1 31 31 H 1.08999 * 109.47436 * 303.31836 * 3 2 1 32 32 H 0.96993 * 119.99868 * 357.27414 * 8 6 4 33 33 H 1.08000 * 125.80603 * 0.02562 * 10 9 8 34 34 H 0.97000 * 119.99913 * 179.97438 * 16 15 13 35 35 H 1.07992 * 126.24879 * 0.02562 * 21 9 8 36 36 H 1.08999 * 109.47102 * 299.68785 * 22 4 3 37 37 H 1.09003 * 109.46941 * 63.14781 * 23 22 4 38 38 H 1.09001 * 109.47279 * 183.14365 * 23 22 4 39 39 H 1.09001 * 109.47492 * 303.14881 * 23 22 4 40 40 H 1.08994 * 109.46868 * 59.35594 * 24 22 4 41 41 H 1.08998 * 109.47361 * 179.36246 * 24 22 4 42 42 H 1.09001 * 109.46775 * 299.36204 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5677 1.4433 -0.0833 5 1 3.9753 0.8175 0.7107 6 6 4.0788 2.8520 0.0749 7 8 3.3028 3.7843 0.0570 8 7 5.3979 3.0763 0.2364 9 6 5.8811 4.3936 0.3265 10 6 5.1069 5.5660 0.2639 11 7 5.9057 6.5956 0.3890 12 7 7.2173 6.1235 0.5271 13 6 8.3425 6.8956 0.6799 14 1 9.3096 6.4261 0.7833 15 6 8.2376 8.2814 0.6958 16 7 7.0619 8.8522 0.5701 17 14 9.7693 9.3319 0.8960 18 1 10.3374 9.6385 -0.4414 19 1 9.4142 10.5984 1.5852 20 1 10.7736 8.5938 1.7031 21 6 7.1776 4.7597 0.4883 22 6 4.0047 0.8919 -1.4420 23 6 3.4261 1.7655 -2.5569 24 6 5.5322 0.8999 -1.5285 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8898 30 1 1.7260 1.9388 0.9183 31 1 1.6290 1.9732 -0.8587 32 1 6.0138 2.3290 0.2904 33 1 4.0351 5.6095 0.1383 34 1 6.9886 9.8194 0.5815 35 1 8.0237 4.0937 0.5707 36 1 3.6398 -0.1291 -1.5541 37 1 3.8346 2.7731 -2.4779 38 1 3.6907 1.3412 -3.5254 39 1 2.3410 1.8050 -2.4616 40 1 5.9446 0.2867 -0.7273 41 1 5.8437 0.4966 -2.4919 42 1 5.8964 1.9223 -1.4277 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764009358.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:30:35 Heat of formation + Delta-G solvation = 25.050379 kcal Electronic energy + Delta-G solvation = -22161.139630 eV Core-core repulsion = 18949.588827 eV Total energy + Delta-G solvation = -3211.550803 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.25426 -39.06349 -36.48875 -34.46325 -33.68116 -32.93866 -30.21628 -29.43975 -27.88810 -27.00720 -25.13497 -24.20355 -21.95018 -21.20255 -20.67711 -19.33867 -18.87015 -17.41371 -16.37549 -15.70222 -15.41316 -15.34686 -15.10626 -14.19812 -13.92206 -13.75844 -13.58475 -13.44189 -13.01974 -12.86056 -12.82576 -12.18305 -11.98812 -11.87434 -11.66499 -11.52075 -11.38409 -11.24288 -11.15033 -10.94925 -10.91455 -10.70365 -10.52267 -10.48867 -10.28135 -9.98777 -9.10194 -8.98150 -8.74137 -8.01181 -6.63110 -6.52430 -4.18944 2.90277 3.06456 3.09395 3.11724 3.67744 3.72684 3.92197 4.46728 4.66395 4.70924 4.82159 4.97857 5.00422 5.05533 5.06319 5.19108 5.37161 5.48371 5.52783 5.65355 5.70556 5.74257 5.82258 5.85603 5.93700 5.96713 6.06884 6.10636 6.23491 6.28319 6.30155 6.38142 6.51065 6.55386 6.95821 7.02207 7.19503 7.30538 7.90093 8.25581 8.35754 8.69163 8.96778 9.42428 9.71996 10.43659 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.038005 B = 0.003594 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.572413 B = 7788.227092 C = 8143.983941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.103 4.103 4 C -0.101 4.101 5 H 0.088 0.912 6 C 0.506 3.494 7 O -0.536 6.536 8 N -0.628 5.628 9 C -0.058 4.058 10 C -0.035 4.035 11 N -0.261 5.261 12 N -0.144 5.144 13 C -0.324 4.324 14 H 0.115 0.885 15 C 0.046 3.954 16 N -0.771 5.771 17 Si 0.934 3.066 18 H -0.271 1.271 19 H -0.276 1.276 20 H -0.264 1.264 21 C -0.086 4.086 22 C -0.083 4.083 23 C -0.153 4.153 24 C -0.172 4.172 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.050 0.950 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.397 0.603 33 H 0.175 0.825 34 H 0.274 0.726 35 H 0.144 0.856 36 H 0.079 0.921 37 H 0.061 0.939 38 H 0.052 0.948 39 H 0.061 0.939 40 H 0.055 0.945 41 H 0.058 0.942 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.519 -16.638 -2.483 17.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.141 4.141 4 C -0.122 4.122 5 H 0.106 0.894 6 C 0.292 3.708 7 O -0.413 6.413 8 N -0.272 5.272 9 C -0.164 4.164 10 C -0.210 4.210 11 N -0.092 5.092 12 N 0.088 4.912 13 C -0.456 4.456 14 H 0.133 0.867 15 C -0.171 4.171 16 N -0.397 5.397 17 Si 0.758 3.242 18 H -0.196 1.196 19 H -0.201 1.201 20 H -0.188 1.188 21 C -0.237 4.237 22 C -0.102 4.102 23 C -0.211 4.211 24 C -0.230 4.230 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.232 0.768 33 H 0.192 0.808 34 H 0.085 0.915 35 H 0.161 0.839 36 H 0.097 0.903 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.104 -14.456 -2.458 15.526 hybrid contribution 1.092 -0.906 0.132 1.425 sum -4.012 -15.362 -2.326 16.047 Atomic orbital electron populations 1.21759 0.95962 1.01199 1.02006 1.21598 0.95825 0.97008 1.01835 1.21487 0.92585 0.96276 1.03740 1.21405 0.97697 0.94223 0.98909 0.89395 1.20321 0.81891 0.90863 0.77707 1.90580 1.55658 1.44647 1.50403 1.42940 1.07449 1.06365 1.70435 1.17322 0.92349 0.83968 1.22759 1.24099 1.00246 0.88673 1.07987 1.78246 0.86012 1.19781 1.25146 1.44532 1.05747 1.02002 1.38893 1.19846 0.84730 0.88542 1.52465 0.86720 1.25632 0.98437 0.97413 0.95618 1.70222 1.22831 1.11229 1.35461 0.85842 0.80213 0.79191 0.78970 1.19627 1.20111 1.18848 1.21256 0.96050 0.86577 1.19805 1.21051 0.95955 0.99664 0.93496 1.21949 1.01328 1.00393 0.97387 1.22273 0.95230 1.03579 1.01890 0.92722 0.92717 0.93058 0.91849 0.92235 0.91320 0.90567 0.76794 0.80807 0.91530 0.83875 0.90312 0.92039 0.92882 0.92033 0.92546 0.92330 0.90624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.91 37.16 0.37 -0.92 16 2 C -0.13 -1.13 5.78 -26.73 -0.15 -1.29 16 3 C -0.10 -1.23 3.80 -26.73 -0.10 -1.33 16 4 C -0.10 -1.24 2.07 -91.78 -0.19 -1.43 16 5 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 6 C 0.51 8.80 5.61 -10.99 -0.06 8.74 16 7 O -0.54 -11.48 13.18 5.54 0.07 -11.40 16 8 N -0.63 -11.24 4.01 -10.00 -0.04 -11.28 16 9 C -0.06 -1.36 6.90 -83.84 -0.58 -1.94 16 10 C -0.03 -0.93 10.85 -17.04 -0.18 -1.11 16 11 N -0.26 -7.70 10.40 30.80 0.32 -7.38 16 12 N -0.14 -4.00 3.74 -11.41 -0.04 -4.04 16 13 C -0.32 -8.67 10.25 -14.81 -0.15 -8.82 16 14 H 0.12 2.74 7.83 -52.49 -0.41 2.33 16 15 C 0.05 1.20 5.50 -17.50 -0.10 1.11 16 16 N -0.77 -21.82 11.81 55.50 0.66 -21.17 16 17 Si 0.93 19.14 29.55 -169.99 -5.02 14.12 16 18 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 19 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 20 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 21 C -0.09 -2.05 11.49 -16.39 -0.19 -2.24 16 22 C -0.08 -0.88 2.53 -90.62 -0.23 -1.11 16 23 C -0.15 -1.86 8.63 37.16 0.32 -1.54 16 24 C -0.17 -1.80 7.95 37.16 0.30 -1.50 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.52 6.48 -51.93 -0.34 0.19 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.92 8.06 -51.93 -0.42 0.50 16 31 H 0.08 0.98 6.03 -51.93 -0.31 0.67 16 32 H 0.40 5.68 6.78 -40.82 -0.28 5.40 16 33 H 0.18 4.64 5.93 -52.49 -0.31 4.33 16 34 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 35 H 0.14 2.86 8.06 -52.49 -0.42 2.43 16 36 H 0.08 0.69 6.56 -51.93 -0.34 0.35 16 37 H 0.06 0.94 7.34 -51.93 -0.38 0.56 16 38 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.72 6.12 -51.93 -0.32 0.40 16 40 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.08 0.98 5.39 -51.93 -0.28 0.70 16 LS Contribution 333.29 15.07 5.02 5.02 Total: -1.00 -32.66 333.29 -6.31 -38.97 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -6.33 Total: 10.54 kcal Atomic # 6 Polarization: -12.43 SS G_CDS: -0.95 Total: -13.39 kcal Atomic # 7 Polarization: -44.75 SS G_CDS: 0.89 Total: -43.86 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.07 Total: -11.40 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.02 Total: 14.12 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.66 -6.31 -38.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764009358.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.025 kcal (2) G-P(sol) polarization free energy of solvation -32.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds