Wall clock time and date at job start Tue Mar 31 2020 02:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47182 * 2 1 4 4 C 1.52995 * 109.47107 * 183.31051 * 3 2 1 5 5 H 1.09000 * 109.47574 * 306.42101 * 4 3 2 6 6 C 1.50694 * 109.47352 * 186.41249 * 4 3 2 7 7 O 1.21305 * 119.99925 * 350.04518 * 6 4 3 8 8 N 1.34779 * 120.00278 * 170.04393 * 6 4 3 9 9 C 1.40597 * 119.99687 * 177.27132 * 8 6 4 10 10 C 1.40644 * 126.08650 * 359.97438 * 9 8 6 11 11 N 1.30911 * 108.39004 * 179.77845 * 10 9 8 12 12 N 1.40076 * 108.40201 * 0.38209 * 11 10 9 13 13 C 1.37320 * 126.06529 * 179.87830 * 12 11 10 14 14 H 1.07998 * 120.00053 * 179.69019 * 13 12 11 15 15 C 1.38988 * 120.00323 * 359.41216 * 13 12 11 16 16 N 1.31298 * 119.99718 * 0.27878 * 15 13 12 17 17 Si 1.86801 * 120.00249 * 180.27272 * 15 13 12 18 18 H 1.48508 * 109.46714 * 90.00460 * 17 15 13 19 19 H 1.48498 * 109.47054 * 210.00324 * 17 15 13 20 20 H 1.48494 * 109.47076 * 330.00720 * 17 15 13 21 21 C 1.35685 * 126.07631 * 180.02562 * 9 8 6 22 22 C 1.53002 * 109.46974 * 66.41300 * 4 3 2 23 23 C 1.53005 * 109.46963 * 59.68457 * 22 4 3 24 24 C 1.53000 * 109.47535 * 179.68514 * 22 4 3 25 25 H 1.08997 * 109.47085 * 299.99388 * 1 2 3 26 26 H 1.08999 * 109.47509 * 59.99792 * 1 2 3 27 27 H 1.08997 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46606 * 240.00373 * 2 1 3 29 29 H 1.08995 * 109.47290 * 120.00926 * 2 1 3 30 30 H 1.09006 * 109.46729 * 63.31673 * 3 2 1 31 31 H 1.08999 * 109.47436 * 303.31836 * 3 2 1 32 32 H 0.96993 * 119.99868 * 357.27414 * 8 6 4 33 33 H 1.08000 * 125.80603 * 0.02562 * 10 9 8 34 34 H 0.97000 * 119.99913 * 179.97438 * 16 15 13 35 35 H 1.07992 * 126.24879 * 0.02562 * 21 9 8 36 36 H 1.08999 * 109.47102 * 299.68785 * 22 4 3 37 37 H 1.09003 * 109.46941 * 63.14781 * 23 22 4 38 38 H 1.09001 * 109.47279 * 183.14365 * 23 22 4 39 39 H 1.09001 * 109.47492 * 303.14881 * 23 22 4 40 40 H 1.08994 * 109.46868 * 59.35594 * 24 22 4 41 41 H 1.08998 * 109.47361 * 179.36246 * 24 22 4 42 42 H 1.09001 * 109.46775 * 299.36204 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5677 1.4433 -0.0833 5 1 3.9753 0.8175 0.7107 6 6 4.0788 2.8520 0.0749 7 8 3.3028 3.7843 0.0570 8 7 5.3979 3.0763 0.2364 9 6 5.8811 4.3936 0.3265 10 6 5.1069 5.5660 0.2639 11 7 5.9057 6.5956 0.3890 12 7 7.2173 6.1235 0.5271 13 6 8.3425 6.8956 0.6799 14 1 9.3096 6.4261 0.7833 15 6 8.2376 8.2814 0.6958 16 7 7.0619 8.8522 0.5701 17 14 9.7693 9.3319 0.8960 18 1 10.3374 9.6385 -0.4414 19 1 9.4142 10.5984 1.5852 20 1 10.7736 8.5938 1.7031 21 6 7.1776 4.7597 0.4883 22 6 4.0047 0.8919 -1.4420 23 6 3.4261 1.7655 -2.5569 24 6 5.5322 0.8999 -1.5285 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8898 30 1 1.7260 1.9388 0.9183 31 1 1.6290 1.9732 -0.8587 32 1 6.0138 2.3290 0.2904 33 1 4.0351 5.6095 0.1383 34 1 6.9886 9.8194 0.5815 35 1 8.0237 4.0937 0.5707 36 1 3.6398 -0.1291 -1.5541 37 1 3.8346 2.7731 -2.4779 38 1 3.6907 1.3412 -3.5254 39 1 2.3410 1.8050 -2.4616 40 1 5.9446 0.2867 -0.7273 41 1 5.8437 0.4966 -2.4919 42 1 5.8964 1.9223 -1.4277 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764009358.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:30:35 Heat of formation + Delta-G solvation = 4.617702 kcal Electronic energy + Delta-G solvation = -22162.025657 eV Core-core repulsion = 18949.588827 eV Total energy + Delta-G solvation = -3212.436830 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.85732 -40.74092 -37.66922 -36.02149 -35.13314 -34.30739 -32.23234 -30.46706 -29.57010 -28.05838 -26.87288 -25.40753 -22.91722 -22.86466 -22.14751 -21.16550 -20.08646 -19.24057 -17.63702 -17.38444 -16.88850 -16.86410 -16.17754 -15.73210 -15.36950 -15.03693 -14.91875 -14.68152 -14.47074 -14.32160 -13.82592 -13.49254 -13.31188 -13.19310 -12.88686 -12.85528 -12.79891 -12.74627 -12.36118 -12.09076 -12.04753 -11.76167 -11.68140 -11.62987 -11.38133 -11.14972 -10.94724 -10.81567 -10.43080 -10.09085 -8.48573 -8.46642 -6.23545 1.24153 1.39283 1.56521 1.58421 1.89497 2.07730 2.36860 2.55630 2.94383 3.09292 3.72531 3.81590 3.89380 4.18216 4.24573 4.37020 4.42220 4.44515 4.62092 4.63461 4.67486 4.75474 4.83947 4.94041 5.00356 5.01626 5.07658 5.08458 5.11721 5.16851 5.24575 5.30474 5.31136 5.42541 5.45429 5.50846 5.54455 5.63422 5.96763 6.33906 6.74905 6.82318 7.45593 7.50954 7.70136 8.52874 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.038005 B = 0.003594 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.572413 B = 7788.227092 C = 8143.983941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.117 4.117 3 C -0.102 4.102 4 C -0.090 4.090 5 H 0.120 0.880 6 C 0.502 3.498 7 O -0.581 6.581 8 N -0.618 5.618 9 C -0.042 4.042 10 C -0.063 4.063 11 N -0.311 5.311 12 N -0.168 5.168 13 C -0.354 4.354 14 H 0.141 0.859 15 C -0.008 4.008 16 N -0.826 5.826 17 Si 1.020 2.980 18 H -0.264 1.264 19 H -0.277 1.277 20 H -0.243 1.243 21 C -0.084 4.084 22 C -0.076 4.076 23 C -0.154 4.154 24 C -0.173 4.173 25 H 0.045 0.955 26 H 0.049 0.951 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.046 0.954 31 H 0.058 0.942 32 H 0.418 0.582 33 H 0.164 0.836 34 H 0.276 0.724 35 H 0.187 0.813 36 H 0.115 0.885 37 H 0.018 0.982 38 H 0.070 0.930 39 H 0.061 0.939 40 H 0.082 0.918 41 H 0.070 0.930 42 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.747 -19.997 -2.425 20.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.154 4.154 3 C -0.140 4.140 4 C -0.111 4.111 5 H 0.138 0.862 6 C 0.291 3.709 7 O -0.461 6.461 8 N -0.265 5.265 9 C -0.148 4.148 10 C -0.238 4.238 11 N -0.143 5.143 12 N 0.062 4.938 13 C -0.485 4.485 14 H 0.158 0.842 15 C -0.219 4.219 16 N -0.454 5.454 17 Si 0.839 3.161 18 H -0.189 1.189 19 H -0.202 1.202 20 H -0.166 1.166 21 C -0.234 4.234 22 C -0.095 4.095 23 C -0.211 4.211 24 C -0.230 4.230 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.087 0.913 28 H 0.099 0.901 29 H 0.092 0.908 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.257 0.743 33 H 0.181 0.819 34 H 0.085 0.915 35 H 0.203 0.797 36 H 0.133 0.867 37 H 0.037 0.963 38 H 0.089 0.911 39 H 0.080 0.920 40 H 0.101 0.899 41 H 0.089 0.911 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.328 -17.890 -2.402 18.355 hybrid contribution 0.426 0.022 0.073 0.433 sum -2.902 -17.868 -2.329 18.251 Atomic orbital electron populations 1.21780 0.95852 1.02113 1.01421 1.21560 0.95918 0.94636 1.03302 1.21470 0.92372 0.98261 1.01868 1.21494 0.97765 0.90629 1.01231 0.86213 1.21449 0.81109 0.92779 0.75601 1.90567 1.56762 1.46810 1.51920 1.42959 1.08318 1.04788 1.70465 1.17412 0.91780 0.85535 1.20077 1.24114 0.99989 0.90166 1.09544 1.78138 0.87563 1.21637 1.26967 1.44832 1.05364 1.03493 1.40090 1.20615 0.85448 0.89473 1.53006 0.84183 1.26903 1.02068 0.98648 0.94310 1.70412 1.25954 1.11609 1.37450 0.84583 0.75596 0.76677 0.79270 1.18878 1.20246 1.16645 1.21989 0.97470 0.85899 1.18064 1.21107 0.96350 1.00754 0.91247 1.21956 1.01263 0.98539 0.99316 1.22269 0.94724 1.02270 1.03744 0.93546 0.93229 0.91330 0.90117 0.90834 0.93553 0.92327 0.74305 0.81945 0.91470 0.79650 0.86662 0.96260 0.91089 0.92048 0.89877 0.91108 0.93605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.91 71.98 0.71 -1.60 16 2 C -0.12 -1.74 5.78 30.60 0.18 -1.56 16 3 C -0.10 -2.30 3.80 30.59 0.12 -2.18 16 4 C -0.09 -2.01 2.07 -11.54 -0.02 -2.03 16 5 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 6 C 0.50 17.43 5.61 87.65 0.49 17.92 16 7 O -0.58 -26.08 13.18 -3.11 -0.04 -26.12 16 8 N -0.62 -21.67 4.01 -303.92 -1.22 -22.89 16 9 C -0.04 -1.98 6.90 37.73 0.26 -1.71 16 10 C -0.06 -3.56 10.85 85.42 0.93 -2.64 16 11 N -0.31 -19.30 10.40 -56.47 -0.59 -19.88 16 12 N -0.17 -9.57 3.74 -190.02 -0.71 -10.28 16 13 C -0.35 -19.11 10.25 84.01 0.86 -18.25 16 14 H 0.14 6.52 7.83 -2.91 -0.02 6.50 16 15 C -0.01 -0.42 5.50 84.95 0.47 0.04 16 16 N -0.83 -48.73 11.81 21.66 0.26 -48.48 16 17 Si 1.02 39.20 29.55 68.60 2.03 41.23 16 18 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 19 H -0.28 -10.58 7.11 99.48 0.71 -9.87 16 20 H -0.24 -8.44 7.11 99.48 0.71 -7.74 16 21 C -0.08 -3.98 11.49 83.38 0.96 -3.02 16 22 C -0.08 -1.38 2.53 -10.79 -0.03 -1.40 16 23 C -0.15 -3.56 8.63 71.98 0.62 -2.94 16 24 C -0.17 -2.99 7.95 71.98 0.57 -2.42 16 25 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.07 0.80 8.14 -2.39 -0.02 0.79 16 28 H 0.08 0.95 6.48 -2.38 -0.02 0.94 16 29 H 0.07 0.93 8.14 -2.39 -0.02 0.92 16 30 H 0.05 1.24 8.06 -2.38 -0.02 1.22 16 31 H 0.06 1.52 6.03 -2.39 -0.01 1.51 16 32 H 0.42 10.94 6.78 -92.71 -0.63 10.31 16 33 H 0.16 9.38 5.93 -2.91 -0.02 9.36 16 34 H 0.28 14.95 8.31 -92.71 -0.77 14.18 16 35 H 0.19 6.91 8.06 -2.91 -0.02 6.89 16 36 H 0.12 1.38 6.56 -2.39 -0.02 1.37 16 37 H 0.02 0.59 7.34 -2.39 -0.02 0.57 16 38 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.06 1.40 6.12 -2.39 -0.01 1.38 16 40 H 0.08 1.01 8.13 -2.39 -0.02 0.99 16 41 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.05 1.08 5.39 -2.39 -0.01 1.07 16 Total: -1.00 -77.24 333.29 6.23 -71.01 By element: Atomic # 1 Polarization: 36.81 SS G_CDS: 0.39 Total: 37.21 kcal Atomic # 6 Polarization: -27.91 SS G_CDS: 6.11 Total: -21.80 kcal Atomic # 7 Polarization: -99.27 SS G_CDS: -2.26 Total: -101.53 kcal Atomic # 8 Polarization: -26.08 SS G_CDS: -0.04 Total: -26.12 kcal Atomic # 14 Polarization: 39.20 SS G_CDS: 2.03 Total: 41.23 kcal Total: -77.24 6.23 -71.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764009358.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.627 kcal (2) G-P(sol) polarization free energy of solvation -77.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds