Wall clock time and date at job start Tue Mar 31 2020 02:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47168 * 10.26207 * 3 2 1 5 5 N 1.46896 * 109.47114 * 179.97438 * 4 3 2 6 6 C 1.46956 * 111.00264 * 293.80085 * 5 4 3 7 7 C 1.53048 * 109.36563 * 176.81245 * 6 5 4 8 8 N 1.46963 * 109.36781 * 58.39854 * 7 6 5 9 9 C 1.46896 * 110.99868 * 176.81328 * 8 7 6 10 10 C 1.50703 * 109.46979 * 293.79526 * 9 8 7 11 11 O 1.21272 * 120.00190 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99583 * 180.02562 * 10 9 8 13 13 C 1.46507 * 119.99752 * 180.02562 * 12 10 9 14 14 C 1.50696 * 109.46933 * 180.02562 * 13 12 10 15 15 H 1.07995 * 120.00256 * 359.97438 * 14 13 12 16 16 C 1.37882 * 119.99509 * 180.02562 * 14 13 12 17 17 N 1.31512 * 120.00316 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99552 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47526 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47219 * 119.99803 * 18 16 14 21 21 H 1.48503 * 109.46849 * 239.99807 * 18 16 14 22 22 C 1.46957 * 110.87713 * 300.68055 * 8 7 6 23 23 C 1.46963 * 111.00169 * 169.99835 * 5 4 3 24 24 H 4.44645 * 5.63342 * 179.97438 * 4 1 2 25 25 H 1.09001 * 109.47046 * 130.25833 * 3 2 1 26 26 H 1.08996 * 109.47366 * 250.26237 * 3 2 1 27 27 H 1.09001 * 109.47289 * 300.00032 * 4 3 2 28 28 H 1.09004 * 109.47261 * 59.99776 * 4 3 2 29 29 H 1.09006 * 109.48298 * 296.77713 * 6 5 4 30 30 H 1.09000 * 109.49028 * 56.84339 * 6 5 4 31 31 H 1.08998 * 109.49036 * 298.43023 * 7 6 5 32 32 H 1.09001 * 109.49100 * 178.36836 * 7 6 5 33 33 H 1.08997 * 109.47364 * 53.79771 * 9 8 7 34 34 H 1.09005 * 109.46879 * 173.79995 * 9 8 7 35 35 H 0.96996 * 120.00195 * 0.02562 * 12 10 9 36 36 H 1.08997 * 109.47042 * 300.00138 * 13 12 10 37 37 H 1.09005 * 109.46993 * 60.00235 * 13 12 10 38 38 H 0.96999 * 119.99802 * 180.02562 * 17 16 14 39 39 H 1.08997 * 109.48761 * 299.34899 * 22 8 7 40 40 H 1.09002 * 109.50314 * 179.29551 * 22 8 7 41 41 H 1.09002 * 109.48412 * 303.15760 * 23 5 4 42 42 H 1.08998 * 109.48746 * 63.21928 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.4185 -0.2570 5 7 4.6256 -1.4177 -0.2576 6 6 5.1514 -0.6492 -1.3945 7 6 6.6792 -0.6059 -1.3146 8 7 7.2066 -1.9776 -1.3208 9 6 8.6756 -1.9768 -1.3214 10 6 9.1771 -1.3975 -2.6191 11 8 8.3885 -1.0219 -3.4604 12 7 10.5020 -1.2968 -2.8446 13 6 10.9896 -0.7331 -4.1060 14 6 12.4965 -0.7336 -4.1070 15 1 13.0371 -1.1151 -3.2535 16 6 13.1852 -0.2458 -5.1975 17 7 12.5270 0.2192 -6.2367 18 14 15.0532 -0.2470 -5.1991 19 1 15.5491 -0.8191 -3.9216 20 1 15.5467 -1.0677 -6.3340 21 1 15.5489 1.1454 -5.3428 22 6 6.6808 -2.7461 -0.1839 23 6 5.1530 -2.7894 -0.2638 24 1 -1.0498 -0.0004 0.0001 25 1 3.0090 0.6649 -0.7843 26 1 3.0092 0.3479 0.9672 27 1 2.7936 -2.0829 0.5272 28 1 2.7934 -1.7658 -1.2243 29 1 4.8494 -1.1265 -2.3268 30 1 4.7566 0.3662 -1.3607 31 1 6.9812 -0.1044 -0.3952 32 1 7.0729 -0.0610 -2.1726 33 1 9.0389 -1.3733 -0.4896 34 1 9.0395 -2.9987 -1.2150 35 1 11.1327 -1.5976 -2.1719 36 1 10.6258 -1.3360 -4.9380 37 1 10.6261 0.2891 -4.2117 38 1 13.0116 0.5620 -7.0039 39 1 6.9828 -2.2689 0.7484 40 1 7.0756 -3.7615 -0.2172 41 1 4.7593 -3.3343 0.5942 42 1 4.8510 -3.2910 -1.1832 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776595302.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:40:43 Heat of formation + Delta-G solvation = 27.573150 kcal Electronic energy + Delta-G solvation = -21189.650465 eV Core-core repulsion = 17978.209058 eV Total energy + Delta-G solvation = -3211.441408 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.73983 -38.45087 -36.09399 -34.19961 -33.87611 -32.32592 -31.03400 -30.50149 -28.49842 -26.86806 -24.71430 -23.70542 -22.52235 -22.01452 -19.83948 -19.62414 -18.36408 -17.10643 -16.47342 -15.78531 -15.60911 -15.29383 -15.12076 -14.85930 -14.65414 -14.38123 -14.19437 -13.88198 -13.61738 -13.15927 -12.74667 -12.58139 -12.29903 -12.06871 -11.89455 -11.75604 -11.40942 -11.25372 -11.03751 -10.94702 -10.93107 -10.74578 -10.42608 -10.31100 -10.24785 -9.37596 -8.99956 -8.73380 -8.54771 -8.18029 -7.84217 -6.16808 -4.23550 2.51862 2.58872 3.23205 3.30250 3.33238 3.40161 3.61949 3.70587 4.25170 4.27150 4.43840 4.71755 4.79024 4.92664 5.05237 5.19076 5.19588 5.23061 5.32080 5.37711 5.41596 5.52348 5.57971 5.62033 5.63951 5.69816 5.71741 5.76172 5.86336 6.05712 6.17673 6.77644 6.82894 7.04363 7.16024 7.33704 7.35627 7.46689 7.52897 7.68423 7.97513 8.65046 8.79830 9.14137 9.43369 10.93412 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.041067 B = 0.002626 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.655961 B =10659.845351 C =11133.042839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.181 4.181 3 C -0.013 4.013 4 C 0.062 3.938 5 N -0.542 5.542 6 C 0.056 3.944 7 C 0.053 3.947 8 N -0.521 5.521 9 C 0.036 3.964 10 C 0.499 3.501 11 O -0.540 6.540 12 N -0.715 5.715 13 C 0.251 3.749 14 C -0.543 4.543 15 H 0.063 0.937 16 C 0.063 3.937 17 N -0.885 5.885 18 Si 0.904 3.096 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.282 1.282 22 C 0.057 3.943 23 C 0.060 3.940 24 H 0.216 0.784 25 H 0.089 0.911 26 H 0.095 0.905 27 H 0.077 0.923 28 H 0.039 0.961 29 H 0.047 0.953 30 H 0.080 0.920 31 H 0.035 0.965 32 H 0.104 0.896 33 H 0.058 0.942 34 H 0.098 0.902 35 H 0.389 0.611 36 H 0.026 0.974 37 H 0.026 0.974 38 H 0.265 0.735 39 H 0.041 0.959 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.852 -4.184 15.369 23.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.182 4.182 3 C -0.049 4.049 4 C -0.066 4.066 5 N -0.267 5.267 6 C -0.072 4.072 7 C -0.075 4.075 8 N -0.246 5.246 9 C -0.095 4.095 10 C 0.283 3.717 11 O -0.418 6.418 12 N -0.364 5.364 13 C 0.130 3.870 14 C -0.581 4.581 15 H 0.081 0.919 16 C -0.141 4.141 17 N -0.523 5.523 18 Si 0.731 3.269 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.071 4.071 23 C -0.068 4.068 24 H 0.233 0.767 25 H 0.107 0.893 26 H 0.113 0.887 27 H 0.095 0.905 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.098 0.902 31 H 0.053 0.947 32 H 0.122 0.878 33 H 0.076 0.924 34 H 0.116 0.884 35 H 0.222 0.778 36 H 0.044 0.956 37 H 0.044 0.956 38 H 0.075 0.925 39 H 0.060 0.940 40 H 0.098 0.902 41 H 0.096 0.904 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -17.359 -3.827 14.544 22.967 hybrid contribution 1.155 -0.132 0.216 1.182 sum -16.204 -3.959 14.760 22.273 Atomic orbital electron populations 1.24891 0.95961 1.00667 1.01642 1.23111 0.94507 1.00521 1.00059 1.18731 0.84170 0.97983 1.04048 1.21971 0.87537 0.96142 1.00946 1.62179 1.06653 1.14062 1.43841 1.22231 0.94968 0.98268 0.91705 1.22350 0.93793 0.89292 1.02029 1.61787 1.05988 1.14733 1.42142 1.21994 0.88735 1.02332 0.96449 1.20302 0.83238 0.79809 0.88373 1.90618 1.55175 1.49348 1.46627 1.46460 1.05502 1.62615 1.21865 1.19081 0.93790 0.94097 0.79991 1.21274 0.90747 1.43031 1.03046 0.91857 1.24963 0.99148 0.94827 0.95166 1.69984 1.35793 1.40425 1.06063 0.86362 0.84609 0.77811 0.78123 1.19645 1.20802 1.20818 1.22171 0.94279 0.98567 0.92085 1.22117 0.94567 0.89076 1.01032 0.76708 0.89308 0.88673 0.90492 0.94300 0.93488 0.90186 0.94689 0.87801 0.92371 0.88377 0.77828 0.95564 0.95631 0.92511 0.94045 0.90229 0.90368 0.93734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.80 19.25 29.55 0.57 -1.24 16 2 C -0.18 -1.73 13.34 -37.12 -0.50 -2.22 16 3 C -0.01 -0.11 5.64 -29.52 -0.17 -0.27 16 4 C 0.06 0.57 4.91 -3.83 -0.02 0.55 16 5 N -0.54 -5.73 4.71 -234.46 -1.10 -6.83 16 6 C 0.06 0.68 5.41 -3.77 -0.02 0.66 16 7 C 0.05 0.76 5.26 -3.76 -0.02 0.74 16 8 N -0.52 -7.42 4.45 -235.91 -1.05 -8.46 16 9 C 0.04 0.52 5.45 -4.98 -0.03 0.49 16 10 C 0.50 9.80 7.53 -10.98 -0.08 9.72 16 11 O -0.54 -12.74 14.34 5.56 0.08 -12.66 16 12 N -0.72 -14.87 5.55 -61.47 -0.34 -15.21 16 13 C 0.25 6.63 5.43 -5.19 -0.03 6.60 16 14 C -0.54 -14.68 9.28 -34.44 -0.32 -15.00 16 15 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 16 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 17 N -0.89 -26.09 13.29 55.43 0.74 -25.35 16 18 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 19 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 C 0.06 0.62 5.61 -3.77 -0.02 0.60 16 23 C 0.06 0.61 5.61 -3.76 -0.02 0.59 16 24 H 0.22 1.07 7.80 -54.10 -0.42 0.65 16 25 H 0.09 0.76 6.49 -51.93 -0.34 0.42 16 26 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.08 0.64 8.03 -51.93 -0.42 0.22 16 28 H 0.04 0.38 8.12 -51.93 -0.42 -0.04 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 0.85 6.34 -51.93 -0.33 0.52 16 31 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.10 1.80 5.85 -51.93 -0.30 1.49 16 33 H 0.06 0.73 8.12 -51.93 -0.42 0.31 16 34 H 0.10 1.19 8.03 -51.93 -0.42 0.77 16 35 H 0.39 6.89 8.32 -40.82 -0.34 6.55 16 36 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 39 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.08 0.76 8.07 -51.93 -0.42 0.34 16 41 H 0.08 0.64 8.07 -51.93 -0.42 0.22 16 42 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 347.49 15.07 5.24 5.24 Total: -1.00 -32.44 347.49 -8.95 -41.39 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -6.74 Total: 3.26 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: -0.75 Total: 2.84 kcal Atomic # 7 Polarization: -54.09 SS G_CDS: -1.76 Total: -55.85 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: 0.08 Total: -12.66 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.44 -8.95 -41.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776595302.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.959 kcal (2) G-P(sol) polarization free energy of solvation -32.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds