Wall clock time and date at job start Tue Mar 31 2020 02:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47168 * 10.26207 * 3 2 1 5 5 N 1.46896 * 109.47114 * 179.97438 * 4 3 2 6 6 C 1.46956 * 111.00264 * 293.80085 * 5 4 3 7 7 C 1.53048 * 109.36563 * 176.81245 * 6 5 4 8 8 N 1.46963 * 109.36781 * 58.39854 * 7 6 5 9 9 C 1.46896 * 110.99868 * 176.81328 * 8 7 6 10 10 C 1.50703 * 109.46979 * 293.79526 * 9 8 7 11 11 O 1.21272 * 120.00190 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99583 * 180.02562 * 10 9 8 13 13 C 1.46507 * 119.99752 * 180.02562 * 12 10 9 14 14 C 1.50696 * 109.46933 * 180.02562 * 13 12 10 15 15 H 1.07995 * 120.00256 * 359.97438 * 14 13 12 16 16 C 1.37882 * 119.99509 * 180.02562 * 14 13 12 17 17 N 1.31512 * 120.00316 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99552 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47526 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47219 * 119.99803 * 18 16 14 21 21 H 1.48503 * 109.46849 * 239.99807 * 18 16 14 22 22 C 1.46957 * 110.87713 * 300.68055 * 8 7 6 23 23 C 1.46963 * 111.00169 * 169.99835 * 5 4 3 24 24 H 4.44645 * 5.63342 * 179.97438 * 4 1 2 25 25 H 1.09001 * 109.47046 * 130.25833 * 3 2 1 26 26 H 1.08996 * 109.47366 * 250.26237 * 3 2 1 27 27 H 1.09001 * 109.47289 * 300.00032 * 4 3 2 28 28 H 1.09004 * 109.47261 * 59.99776 * 4 3 2 29 29 H 1.09006 * 109.48298 * 296.77713 * 6 5 4 30 30 H 1.09000 * 109.49028 * 56.84339 * 6 5 4 31 31 H 1.08998 * 109.49036 * 298.43023 * 7 6 5 32 32 H 1.09001 * 109.49100 * 178.36836 * 7 6 5 33 33 H 1.08997 * 109.47364 * 53.79771 * 9 8 7 34 34 H 1.09005 * 109.46879 * 173.79995 * 9 8 7 35 35 H 0.96996 * 120.00195 * 0.02562 * 12 10 9 36 36 H 1.08997 * 109.47042 * 300.00138 * 13 12 10 37 37 H 1.09005 * 109.46993 * 60.00235 * 13 12 10 38 38 H 0.96999 * 119.99802 * 180.02562 * 17 16 14 39 39 H 1.08997 * 109.48761 * 299.34899 * 22 8 7 40 40 H 1.09002 * 109.50314 * 179.29551 * 22 8 7 41 41 H 1.09002 * 109.48412 * 303.15760 * 23 5 4 42 42 H 1.08998 * 109.48746 * 63.21928 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.4185 -0.2570 5 7 4.6256 -1.4177 -0.2576 6 6 5.1514 -0.6492 -1.3945 7 6 6.6792 -0.6059 -1.3146 8 7 7.2066 -1.9776 -1.3208 9 6 8.6756 -1.9768 -1.3214 10 6 9.1771 -1.3975 -2.6191 11 8 8.3885 -1.0219 -3.4604 12 7 10.5020 -1.2968 -2.8446 13 6 10.9896 -0.7331 -4.1060 14 6 12.4965 -0.7336 -4.1070 15 1 13.0371 -1.1151 -3.2535 16 6 13.1852 -0.2458 -5.1975 17 7 12.5270 0.2192 -6.2367 18 14 15.0532 -0.2470 -5.1991 19 1 15.5491 -0.8191 -3.9216 20 1 15.5467 -1.0677 -6.3340 21 1 15.5489 1.1454 -5.3428 22 6 6.6808 -2.7461 -0.1839 23 6 5.1530 -2.7894 -0.2638 24 1 -1.0498 -0.0004 0.0001 25 1 3.0090 0.6649 -0.7843 26 1 3.0092 0.3479 0.9672 27 1 2.7936 -2.0829 0.5272 28 1 2.7934 -1.7658 -1.2243 29 1 4.8494 -1.1265 -2.3268 30 1 4.7566 0.3662 -1.3607 31 1 6.9812 -0.1044 -0.3952 32 1 7.0729 -0.0610 -2.1726 33 1 9.0389 -1.3733 -0.4896 34 1 9.0395 -2.9987 -1.2150 35 1 11.1327 -1.5976 -2.1719 36 1 10.6258 -1.3360 -4.9380 37 1 10.6261 0.2891 -4.2117 38 1 13.0116 0.5620 -7.0039 39 1 6.9828 -2.2689 0.7484 40 1 7.0756 -3.7615 -0.2172 41 1 4.7593 -3.3343 0.5942 42 1 4.8510 -3.2910 -1.1832 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776595302.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:40:42 Heat of formation + Delta-G solvation = 2.610171 kcal Electronic energy + Delta-G solvation = -21190.732941 eV Core-core repulsion = 17978.209058 eV Total energy + Delta-G solvation = -3212.523884 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.96155 -39.77979 -37.08489 -36.04411 -34.73904 -34.32698 -31.93717 -31.45448 -29.93077 -28.38975 -25.93867 -24.71615 -24.19555 -23.01338 -21.34720 -20.76489 -19.00484 -18.91101 -17.56591 -17.43032 -16.85250 -16.71523 -16.21390 -16.12729 -15.72141 -15.65668 -15.26636 -15.21719 -14.76149 -14.24983 -14.07818 -14.00272 -13.86983 -13.40212 -12.99250 -12.91475 -12.85635 -12.73528 -12.38653 -12.23888 -12.20208 -11.90251 -11.86301 -11.44788 -11.11970 -10.94892 -10.80878 -10.60340 -9.78836 -9.44797 -9.21885 -8.28987 -6.45436 1.43351 1.44475 1.57981 1.82639 1.84122 1.91826 2.28371 2.47494 2.83637 3.05896 3.07870 3.62203 3.87172 3.95306 4.00919 4.15713 4.22361 4.26347 4.37221 4.43194 4.48388 4.52095 4.59541 4.63134 4.84750 4.92736 4.96063 4.98912 5.03859 5.10797 5.13151 5.20048 5.25701 5.50736 5.71569 5.84900 5.88053 5.92422 6.10566 6.18163 6.66573 6.70451 6.97801 7.24378 7.56220 8.83402 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.041067 B = 0.002626 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.655961 B =10659.845351 C =11133.042839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.218 4.218 3 C -0.008 4.008 4 C 0.067 3.933 5 N -0.539 5.539 6 C 0.063 3.937 7 C 0.058 3.942 8 N -0.545 5.545 9 C 0.051 3.949 10 C 0.494 3.506 11 O -0.585 6.585 12 N -0.710 5.710 13 C 0.269 3.731 14 C -0.554 4.554 15 H 0.085 0.915 16 C 0.001 3.999 17 N -0.932 5.932 18 Si 0.986 3.014 19 H -0.252 1.252 20 H -0.280 1.280 21 H -0.279 1.279 22 C 0.059 3.941 23 C 0.058 3.942 24 H 0.244 0.756 25 H 0.084 0.916 26 H 0.101 0.899 27 H 0.090 0.910 28 H 0.028 0.972 29 H 0.024 0.976 30 H 0.090 0.910 31 H 0.044 0.956 32 H 0.064 0.936 33 H 0.085 0.915 34 H 0.129 0.871 35 H 0.408 0.592 36 H -0.015 1.015 37 H -0.014 1.014 38 H 0.268 0.732 39 H 0.053 0.947 40 H 0.099 0.901 41 H 0.105 0.895 42 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.381 -5.400 18.160 25.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.218 4.218 3 C -0.045 4.045 4 C -0.061 4.061 5 N -0.264 5.264 6 C -0.065 4.065 7 C -0.071 4.071 8 N -0.270 5.270 9 C -0.080 4.080 10 C 0.281 3.719 11 O -0.466 6.466 12 N -0.361 5.361 13 C 0.146 3.854 14 C -0.592 4.592 15 H 0.103 0.897 16 C -0.198 4.198 17 N -0.570 5.570 18 Si 0.809 3.191 19 H -0.175 1.175 20 H -0.205 1.205 21 H -0.205 1.205 22 C -0.068 4.068 23 C -0.070 4.070 24 H 0.260 0.740 25 H 0.102 0.898 26 H 0.119 0.881 27 H 0.108 0.892 28 H 0.047 0.953 29 H 0.042 0.958 30 H 0.109 0.891 31 H 0.062 0.938 32 H 0.082 0.918 33 H 0.103 0.897 34 H 0.147 0.853 35 H 0.244 0.756 36 H 0.003 0.997 37 H 0.004 0.996 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.117 0.883 41 H 0.124 0.876 42 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -16.897 -5.073 17.396 24.776 hybrid contribution 0.870 0.245 -0.659 1.119 sum -16.027 -4.828 16.737 23.671 Atomic orbital electron populations 1.25697 0.96880 0.99297 1.00353 1.23477 0.95235 1.01825 1.01311 1.18671 0.84129 0.97557 1.04168 1.21965 0.86503 0.96765 1.00838 1.62215 1.07497 1.14297 1.42384 1.22099 0.93867 0.99079 0.91445 1.22176 0.94899 0.89425 1.00559 1.61742 1.05936 1.14842 1.44514 1.21922 0.89041 1.03892 0.93113 1.21389 0.82156 0.78478 0.89914 1.90608 1.56185 1.50990 1.48807 1.46191 1.06729 1.62727 1.20474 1.18488 0.94115 0.91380 0.81443 1.21670 0.90859 1.42849 1.03846 0.89711 1.26094 1.05104 0.94064 0.94564 1.70149 1.38328 1.41516 1.07042 0.85099 0.77268 0.77877 0.78886 1.17523 1.20524 1.20514 1.22275 0.94506 0.98993 0.91011 1.22219 0.94373 0.88814 1.01548 0.73950 0.89765 0.88106 0.89161 0.95318 0.95800 0.89138 0.93787 0.91752 0.89706 0.85269 0.75638 0.99746 0.99650 0.92298 0.92921 0.88310 0.87645 0.95127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.13 19.25 74.32 1.43 -1.70 16 2 C -0.22 -3.95 13.34 31.13 0.42 -3.53 16 3 C -0.01 -0.14 5.64 28.79 0.16 0.02 16 4 C 0.07 1.15 4.91 86.30 0.42 1.57 16 5 N -0.54 -10.67 4.71 -895.71 -4.22 -14.89 16 6 C 0.06 1.56 5.41 86.31 0.47 2.02 16 7 C 0.06 1.65 5.26 86.31 0.45 2.10 16 8 N -0.54 -14.85 4.45 -900.28 -4.00 -18.85 16 9 C 0.05 1.35 5.45 85.56 0.47 1.82 16 10 C 0.49 19.66 7.53 87.66 0.66 20.32 16 11 O -0.59 -29.11 14.34 -3.00 -0.04 -29.15 16 12 N -0.71 -29.83 5.55 -466.78 -2.59 -32.42 16 13 C 0.27 14.85 5.43 85.63 0.46 15.31 16 14 C -0.55 -30.21 9.28 25.60 0.24 -29.97 16 15 H 0.08 4.15 7.60 -2.91 -0.02 4.13 16 16 C 0.00 0.06 5.46 84.66 0.46 0.52 16 17 N -0.93 -56.60 13.29 21.45 0.28 -56.31 16 18 Si 0.99 42.38 29.54 68.60 2.03 44.41 16 19 H -0.25 -9.94 7.11 99.48 0.71 -9.24 16 20 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 21 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 22 C 0.06 1.13 5.61 86.31 0.48 1.61 16 23 C 0.06 1.06 5.61 86.31 0.48 1.54 16 24 H 0.24 1.83 7.80 -4.43 -0.03 1.80 16 25 H 0.08 1.44 6.49 -2.39 -0.02 1.42 16 26 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.09 1.32 8.03 -2.39 -0.02 1.30 16 28 H 0.03 0.55 8.12 -2.38 -0.02 0.53 16 29 H 0.02 0.69 8.14 -2.38 -0.02 0.67 16 30 H 0.09 1.97 6.34 -2.39 -0.02 1.96 16 31 H 0.04 1.15 8.14 -2.39 -0.02 1.14 16 32 H 0.06 2.36 5.85 -2.39 -0.01 2.35 16 33 H 0.09 1.86 8.12 -2.39 -0.02 1.84 16 34 H 0.13 2.67 8.03 -2.38 -0.02 2.66 16 35 H 0.41 13.91 8.32 -92.71 -0.77 13.14 16 36 H -0.02 -0.97 8.14 -2.39 -0.02 -0.98 16 37 H -0.01 -0.90 8.14 -2.38 -0.02 -0.92 16 38 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 39 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.10 1.51 8.07 -2.39 -0.02 1.49 16 41 H 0.11 1.37 8.07 -2.39 -0.02 1.35 16 42 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -74.07 347.49 -1.71 -75.77 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: 0.23 Total: 19.80 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: 6.61 Total: 11.64 kcal Atomic # 7 Polarization: -111.95 SS G_CDS: -10.53 Total: -122.47 kcal Atomic # 8 Polarization: -29.11 SS G_CDS: -0.04 Total: -29.15 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -74.07 -1.71 -75.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776595302.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.384 kcal (2) G-P(sol) polarization free energy of solvation -74.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds