Wall clock time and date at job start Tue Mar 31 2020 02:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35466 * 116.99485 * 2 1 4 4 N 1.32332 * 119.19801 * 359.97438 * 3 2 1 5 5 C 1.32283 * 120.75614 * 180.02562 * 4 3 2 6 6 C 1.38611 * 119.17408 * 0.02562 * 5 4 3 7 7 C 1.38564 * 118.52578 * 0.27845 * 6 5 4 8 8 C 1.50697 * 120.41553 * 179.71907 * 7 6 5 9 9 N 1.46898 * 109.47233 * 94.99838 * 8 7 6 10 10 C 1.46895 * 111.00158 * 170.00177 * 9 8 7 11 11 C 1.50710 * 109.47111 * 284.40468 * 10 9 8 12 12 H 1.07995 * 119.99892 * 4.70309 * 11 10 9 13 13 C 1.37873 * 119.99628 * 184.70530 * 11 10 9 14 14 N 1.31513 * 120.00492 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99487 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47627 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.47473 * 120.00069 * 15 13 11 18 18 H 1.48500 * 109.47033 * 239.99493 * 15 13 11 19 19 C 1.46895 * 111.00094 * 293.95738 * 9 8 7 20 20 C 1.53001 * 109.47078 * 163.98582 * 19 9 8 21 21 C 1.53000 * 109.47077 * 177.03724 * 20 19 9 22 22 C 1.52997 * 109.47350 * 297.03573 * 20 19 9 23 23 N 1.32311 * 119.19111 * 180.02562 * 3 2 1 24 24 H 1.08993 * 109.47474 * 300.00165 * 1 2 3 25 25 H 1.09004 * 109.47547 * 60.00369 * 1 2 3 26 26 H 1.08998 * 109.46731 * 180.02562 * 1 2 3 27 27 H 1.08002 * 120.40640 * 180.02562 * 5 4 3 28 28 H 1.08002 * 120.73410 * 179.97438 * 6 5 4 29 29 H 1.08998 * 109.47335 * 215.00277 * 8 7 6 30 30 H 1.09005 * 109.47258 * 335.00166 * 8 7 6 31 31 H 1.08996 * 109.47233 * 44.40319 * 10 9 8 32 32 H 1.08997 * 109.47343 * 164.40940 * 10 9 8 33 33 H 0.96998 * 120.00213 * 180.02562 * 14 13 11 34 34 H 1.08996 * 109.47497 * 283.98707 * 19 9 8 35 35 H 1.08999 * 109.47395 * 43.98639 * 19 9 8 36 36 H 1.08999 * 109.47449 * 57.04014 * 20 19 9 37 37 H 1.09008 * 109.47142 * 60.00280 * 21 20 19 38 38 H 1.08996 * 109.47471 * 179.97438 * 21 20 19 39 39 H 1.09001 * 109.47358 * 299.99934 * 21 20 19 40 40 H 1.08999 * 109.47127 * 179.97438 * 22 20 19 41 41 H 1.08998 * 109.47438 * 300.00092 * 22 20 19 42 42 H 1.09003 * 109.46882 * 59.99681 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0439 1.2071 0.0000 4 7 1.3076 2.3066 -0.0005 5 6 1.8758 3.5012 -0.0010 6 6 3.2589 3.5916 -0.0016 7 6 3.9986 2.4199 -0.0075 8 6 5.5048 2.4685 -0.0147 9 7 6.0048 2.3610 1.3624 10 6 7.4607 2.1666 1.3802 11 6 7.7826 0.7462 0.9924 12 1 6.9922 0.0786 0.6831 13 6 9.0863 0.2993 1.0327 14 7 10.0490 1.1125 1.4090 15 14 9.4854 -1.4609 0.5514 16 1 8.2352 -2.1652 0.1690 17 1 10.4246 -1.4589 -0.5989 18 1 10.1137 -2.1584 1.7021 19 6 5.6209 3.5366 2.1552 20 6 5.7956 3.2273 3.6434 21 6 5.4666 4.4749 4.4656 22 6 4.8526 2.0904 4.0422 23 7 3.3660 1.2578 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.2694 4.3950 -0.0010 28 1 3.7492 4.5539 -0.0024 29 1 5.8922 1.6401 -0.6077 30 1 5.8358 3.4120 -0.4487 31 1 7.9273 2.8512 0.6720 32 1 7.8415 2.3648 2.3820 33 1 10.9662 0.7982 1.4370 34 1 6.2540 4.3810 1.8828 35 1 4.5785 3.7848 1.9556 36 1 6.8263 2.9281 3.8338 37 1 4.4358 4.7742 4.2752 38 1 5.5906 4.2546 5.5258 39 1 6.1384 5.2849 4.1815 40 1 4.9774 1.8698 5.1023 41 1 3.8219 2.3896 3.8519 42 1 5.0869 1.2016 3.4564 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823382736.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:41:07 Heat of formation + Delta-G solvation = -8.375361 kcal Electronic energy + Delta-G solvation = -22373.510987 eV Core-core repulsion = 19160.510736 eV Total energy + Delta-G solvation = -3213.000252 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.24873 -39.69213 -38.77736 -35.81970 -35.05118 -34.18567 -32.56304 -29.41108 -28.65211 -28.14645 -27.91352 -25.82585 -24.81835 -23.87786 -22.37903 -20.56060 -19.41741 -18.86996 -18.48832 -17.41331 -16.84526 -16.67541 -16.36649 -15.93311 -15.81990 -15.55380 -15.04073 -14.90048 -14.63573 -14.20332 -14.11327 -13.75725 -13.27409 -13.06774 -12.97935 -12.85308 -12.74911 -12.59204 -12.44431 -12.28362 -12.09387 -12.07745 -11.76522 -11.76245 -11.59127 -11.29269 -11.16361 -10.56345 -10.13438 -9.95912 -8.95785 -8.17069 -6.24442 -0.03585 0.14336 1.38594 1.40400 1.54315 1.63561 2.41936 2.70625 3.06607 3.14630 3.34607 3.54177 3.71066 3.96731 4.12743 4.14922 4.28018 4.37104 4.40484 4.40687 4.49271 4.64185 4.69221 4.70001 4.80032 4.82542 4.86203 4.89182 5.05482 5.10515 5.20030 5.21509 5.25242 5.35427 5.51536 5.58540 5.71744 5.82469 6.12048 6.20798 6.36233 6.65380 6.90770 7.14824 7.44179 8.92950 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.013560 B = 0.005735 C = 0.004617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.340330 B = 4881.142030 C = 6062.852726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.318 6.318 3 C 0.481 3.519 4 N -0.574 5.574 5 C 0.191 3.809 6 C -0.254 4.254 7 C 0.220 3.780 8 C 0.107 3.893 9 N -0.532 5.532 10 C 0.213 3.787 11 C -0.514 4.514 12 H 0.051 0.949 13 C 0.008 3.992 14 N -0.931 5.931 15 Si 0.957 3.043 16 H -0.273 1.273 17 H -0.276 1.276 18 H -0.278 1.278 19 C 0.057 3.943 20 C -0.094 4.094 21 C -0.133 4.133 22 C -0.121 4.121 23 N -0.549 5.549 24 H 0.064 0.936 25 H 0.067 0.933 26 H 0.126 0.874 27 H 0.221 0.779 28 H 0.179 0.821 29 H 0.071 0.929 30 H 0.068 0.932 31 H -0.030 1.030 32 H 0.018 0.982 33 H 0.263 0.737 34 H 0.030 0.970 35 H 0.083 0.917 36 H 0.043 0.957 37 H 0.067 0.933 38 H 0.060 0.940 39 H 0.057 0.943 40 H 0.052 0.948 41 H 0.048 0.952 42 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.562 8.346 -0.561 20.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.220 6.220 3 C 0.178 3.822 4 N -0.305 5.305 5 C 0.026 3.974 6 C -0.277 4.277 7 C 0.074 3.926 8 C -0.021 4.021 9 N -0.257 5.257 10 C 0.087 3.913 11 C -0.553 4.553 12 H 0.070 0.930 13 C -0.190 4.190 14 N -0.572 5.572 15 Si 0.783 3.217 16 H -0.198 1.198 17 H -0.201 1.201 18 H -0.204 1.204 19 C -0.071 4.071 20 C -0.113 4.113 21 C -0.191 4.191 22 C -0.179 4.179 23 N -0.275 5.275 24 H 0.083 0.917 25 H 0.086 0.914 26 H 0.144 0.856 27 H 0.237 0.763 28 H 0.196 0.804 29 H 0.089 0.911 30 H 0.086 0.914 31 H -0.012 1.012 32 H 0.036 0.964 33 H 0.072 0.928 34 H 0.048 0.952 35 H 0.101 0.899 36 H 0.062 0.938 37 H 0.086 0.914 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -19.008 6.703 -0.322 20.158 hybrid contribution 1.438 0.281 -0.595 1.582 sum -17.570 6.984 -0.917 18.929 Atomic orbital electron populations 1.23220 0.73786 1.05169 1.03008 1.86078 1.25409 1.23266 1.87204 1.20882 0.85999 0.85512 0.89798 1.68120 1.41113 0.99534 1.21695 1.23699 0.92475 0.94864 0.86354 1.22911 0.96522 1.00661 1.07584 1.21532 0.96445 0.87271 0.87309 1.20871 0.87452 1.01779 0.92000 1.61905 1.14824 1.39008 1.09967 1.19395 0.81889 0.94906 0.95130 1.21463 0.92466 0.97764 1.43560 0.93042 1.25714 0.96215 1.01520 0.95548 1.70054 1.00607 1.37079 1.49444 0.85519 0.78003 0.80215 0.78011 1.19754 1.20149 1.20411 1.22290 1.00431 0.90716 0.93650 1.21094 0.99026 0.96653 0.94505 1.21725 1.01995 0.95973 0.99425 1.21519 0.98161 0.98263 0.99950 1.67314 1.08500 1.32186 1.19526 0.91695 0.91441 0.85609 0.76286 0.80369 0.91089 0.91440 1.01222 0.96405 0.92781 0.95174 0.89913 0.93829 0.91402 0.92083 0.92407 0.92854 0.93331 0.94690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.84 10.36 113.37 1.17 2.02 16 2 O -0.32 -10.09 10.56 -87.65 -0.93 -11.01 16 3 C 0.48 16.10 8.49 180.57 1.53 17.63 16 4 N -0.57 -15.11 9.23 -313.45 -2.89 -18.01 16 5 C 0.19 3.77 11.30 84.71 0.96 4.72 16 6 C -0.25 -5.85 8.16 22.44 0.18 -5.67 16 7 C 0.22 7.37 5.72 42.56 0.24 7.62 16 8 C 0.11 4.11 5.15 85.56 0.44 4.56 16 9 N -0.53 -22.71 3.74 -905.40 -3.38 -26.09 16 10 C 0.21 11.14 4.59 85.56 0.39 11.53 16 11 C -0.51 -29.87 8.61 25.60 0.22 -29.65 16 12 H 0.05 3.09 7.65 -2.91 -0.02 3.07 16 13 C 0.01 0.46 5.46 84.65 0.46 0.93 16 14 N -0.93 -56.06 13.29 21.45 0.28 -55.78 16 15 Si 0.96 46.17 29.54 68.60 2.03 48.19 16 16 H -0.27 -13.16 7.11 99.48 0.71 -12.45 16 17 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 18 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 19 C 0.06 1.94 4.23 86.30 0.36 2.30 16 20 C -0.09 -3.15 2.92 -10.79 -0.03 -3.18 16 21 C -0.13 -3.29 9.19 71.98 0.66 -2.62 16 22 C -0.12 -4.15 9.06 71.98 0.65 -3.50 16 23 N -0.55 -21.25 10.40 -301.50 -3.14 -24.38 16 24 H 0.06 1.20 8.09 -2.39 -0.02 1.18 16 25 H 0.07 1.20 8.09 -2.39 -0.02 1.18 16 26 H 0.13 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.22 1.96 8.06 -2.91 -0.02 1.94 16 28 H 0.18 2.89 8.01 -2.91 -0.02 2.86 16 29 H 0.07 3.18 7.31 -2.39 -0.02 3.17 16 30 H 0.07 2.24 8.04 -2.38 -0.02 2.22 16 31 H -0.03 -1.65 8.00 -2.39 -0.02 -1.67 16 32 H 0.02 1.01 6.22 -2.39 -0.01 1.00 16 33 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 34 H 0.03 1.00 8.05 -2.39 -0.02 0.98 16 35 H 0.08 2.40 5.58 -2.39 -0.01 2.39 16 36 H 0.04 1.77 6.47 -2.39 -0.02 1.75 16 37 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 38 H 0.06 1.39 8.14 -2.39 -0.02 1.38 16 39 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.03 1.46 7.69 -2.39 -0.02 1.44 16 Total: -1.00 -72.95 345.73 0.22 -72.73 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: 0.99 Total: 7.66 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: 7.25 Total: 6.69 kcal Atomic # 7 Polarization: -115.14 SS G_CDS: -9.13 Total: -124.26 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: -0.93 Total: -11.01 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.19 kcal Total: -72.95 0.22 -72.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823382736.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.355 kcal (2) G-P(sol) polarization free energy of solvation -72.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds