Wall clock time and date at job start Tue Mar 31 2020 03:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42900 * 109.47378 * 2 1 4 4 C 1.42898 * 114.00170 * 180.02562 * 3 2 1 5 5 C 1.50702 * 109.46928 * 179.97438 * 4 3 2 6 6 N 1.31793 * 119.08118 * 269.97148 * 5 4 3 7 7 C 1.32541 * 121.00706 * 180.02562 * 6 5 4 8 8 C 1.50709 * 120.39599 * 180.02562 * 7 6 5 9 9 C 1.38113 * 119.20265 * 359.74175 * 7 6 5 10 10 C 1.39622 * 118.33336 * 0.52428 * 9 7 6 11 11 N 1.38540 * 120.53625 * 179.75883 * 10 9 7 12 12 C 1.46500 * 119.99795 * 355.14152 * 11 10 9 13 13 H 1.09000 * 109.47230 * 37.45292 * 12 11 10 14 14 C 1.50709 * 109.46785 * 277.46163 * 12 11 10 15 15 H 1.08000 * 120.00278 * 359.97438 * 14 12 11 16 16 C 1.37877 * 119.99701 * 180.02562 * 14 12 11 17 17 N 1.31516 * 120.00260 * 359.97438 * 16 14 12 18 18 Si 1.86803 * 119.99834 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47044 * 59.99664 * 18 16 14 20 20 H 1.48499 * 109.47020 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47188 * 299.99931 * 18 16 14 22 22 C 1.52998 * 109.47409 * 157.46174 * 12 11 10 23 23 C 1.52999 * 109.47125 * 294.85735 * 22 12 11 24 24 N 1.31750 * 119.08417 * 89.99969 * 5 4 3 25 25 H 1.08992 * 109.47265 * 300.00447 * 1 2 3 26 26 H 1.09005 * 109.46780 * 60.00637 * 1 2 3 27 27 H 1.08997 * 109.47150 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47028 * 239.99132 * 2 1 3 29 29 H 1.09005 * 109.46780 * 119.99363 * 2 1 3 30 30 H 1.08996 * 109.47422 * 59.98809 * 4 3 2 31 31 H 1.09002 * 109.46518 * 299.99185 * 4 3 2 32 32 H 1.08995 * 109.47284 * 89.99854 * 8 7 6 33 33 H 1.09002 * 109.46972 * 209.99839 * 8 7 6 34 34 H 1.08991 * 109.47153 * 329.99569 * 8 7 6 35 35 H 1.07998 * 120.83800 * 180.25041 * 9 7 6 36 36 H 0.96997 * 120.00081 * 175.13923 * 11 10 9 37 37 H 0.96998 * 119.99966 * 179.97438 * 17 16 14 38 38 H 1.08999 * 109.47333 * 174.85564 * 22 12 11 39 39 H 1.09000 * 109.47094 * 54.85699 * 22 12 11 40 40 H 1.09001 * 109.46995 * 55.44935 * 23 22 12 41 41 H 1.09002 * 109.46918 * 295.45829 * 23 22 12 42 42 H 1.08989 * 109.47411 * 175.45172 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8195 2.9161 -0.0012 6 7 3.9847 3.5346 -1.1532 7 6 4.3268 4.8143 -1.1982 8 6 4.5116 5.5080 -2.5234 9 6 4.5060 5.5059 -0.0163 10 6 4.3287 4.8195 1.1866 11 7 4.5018 5.4673 2.3989 12 6 4.9769 6.8529 2.4276 13 1 4.5391 7.4044 1.5956 14 6 6.4790 6.8714 2.3076 15 1 7.0252 5.9440 2.2191 16 6 7.1561 8.0725 2.3117 17 7 6.4911 9.2020 2.4199 18 14 9.0181 8.0955 2.1636 19 1 9.4206 7.4611 0.8827 20 1 9.4996 9.5000 2.1926 21 1 9.6142 7.3438 3.2971 22 6 4.5626 7.5068 3.7473 23 6 3.0371 7.6038 3.8116 24 7 3.9850 3.5352 1.1500 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5140 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.8334 0.9765 -0.8907 31 1 3.8339 0.9765 0.8893 32 1 3.5634 5.9406 -2.8424 33 1 5.2548 6.2985 -2.4191 34 1 4.8503 4.7867 -3.2669 35 1 4.7808 6.5503 -0.0222 36 1 4.3085 5.0036 3.2285 37 1 6.9675 10.0469 2.4231 38 1 4.9931 8.5063 3.8085 39 1 4.9238 6.9041 4.5806 40 1 2.6037 6.6138 3.6696 41 1 2.6821 8.2718 3.0268 42 1 2.7385 7.9949 4.7842 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893187449.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:26:26 Heat of formation + Delta-G solvation = -12.540465 kcal Electronic energy + Delta-G solvation = -21814.562322 eV Core-core repulsion = 18601.381458 eV Total energy + Delta-G solvation = -3213.180864 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.36521 -37.90980 -36.61464 -33.91680 -33.15743 -31.86375 -31.19547 -29.87272 -27.98736 -26.93521 -26.59082 -23.39492 -22.82905 -21.75101 -21.45513 -19.91504 -17.51867 -16.78055 -16.55649 -16.22790 -15.82127 -14.90953 -14.81325 -14.44412 -14.39098 -13.83644 -13.31972 -13.17112 -13.01501 -12.74244 -12.66076 -12.45521 -12.12097 -12.00539 -11.80390 -11.44125 -11.38989 -11.28402 -11.14860 -10.88200 -10.60517 -10.28509 -10.13197 -10.00036 -9.78980 -9.59828 -9.38677 -8.91960 -8.58583 -8.54848 -7.20327 -6.18366 -4.29659 1.59662 2.07719 3.22053 3.26935 3.30484 3.59956 3.95039 4.31046 4.48360 4.68182 4.87213 4.96842 5.08754 5.13540 5.28669 5.38546 5.40308 5.56368 5.62930 5.75331 5.82928 5.88445 5.91449 6.01506 6.02931 6.09981 6.22962 6.27229 6.30497 6.44361 6.71552 6.82910 6.89826 6.97221 7.19546 7.31719 7.48439 7.59107 7.82233 8.09089 8.13794 8.49748 8.74712 8.96803 9.38588 10.82969 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.019713 B = 0.004344 C = 0.003967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.018650 B = 6443.438006 C = 7055.707156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.059 3.941 3 O -0.380 6.380 4 C 0.143 3.857 5 C 0.350 3.650 6 N -0.564 5.564 7 C 0.182 3.818 8 C -0.099 4.099 9 C -0.268 4.268 10 C 0.450 3.550 11 N -0.686 5.686 12 C 0.274 3.726 13 H 0.044 0.956 14 C -0.531 4.531 15 H 0.059 0.941 16 C 0.067 3.933 17 N -0.888 5.888 18 Si 0.897 3.103 19 H -0.276 1.276 20 H -0.285 1.285 21 H -0.277 1.277 22 C -0.128 4.128 23 C -0.149 4.149 24 N -0.583 5.583 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.150 0.850 36 H 0.393 0.607 37 H 0.266 0.734 38 H 0.110 0.890 39 H 0.040 0.960 40 H 0.039 0.961 41 H 0.046 0.954 42 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.055 -10.649 -4.505 13.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.018 4.018 3 O -0.298 6.298 4 C 0.064 3.936 5 C 0.078 3.922 6 N -0.288 5.288 7 C 0.042 3.958 8 C -0.156 4.156 9 C -0.297 4.297 10 C 0.204 3.796 11 N -0.312 5.312 12 C 0.172 3.828 13 H 0.062 0.938 14 C -0.569 4.569 15 H 0.077 0.923 16 C -0.135 4.135 17 N -0.526 5.526 18 Si 0.725 3.275 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.202 1.202 22 C -0.167 4.167 23 C -0.206 4.206 24 N -0.311 5.311 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.168 0.832 36 H 0.227 0.773 37 H 0.076 0.924 38 H 0.128 0.872 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.065 0.935 42 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -7.314 -10.918 -4.477 13.883 hybrid contribution 1.440 0.605 0.437 1.621 sum -5.875 -10.313 -4.040 12.538 Atomic orbital electron populations 1.21730 0.93856 1.01959 1.03232 1.22446 0.95524 0.83793 1.00049 1.87948 1.20109 1.26286 1.95450 1.20798 0.81871 0.89500 1.01404 1.21915 0.91648 0.95180 0.83427 1.67876 1.20786 1.10455 1.29634 1.21203 0.90035 0.89235 0.95328 1.20659 1.02643 0.99839 0.92460 1.22156 1.11982 1.03590 0.91940 1.18556 0.86005 0.87132 0.87875 1.45316 1.67123 1.15410 1.03375 1.18942 0.93669 0.74953 0.95273 0.93800 1.21473 0.91318 0.92955 1.51196 0.92289 1.24887 0.98721 0.95333 0.94589 1.69827 1.35712 0.97573 1.49503 0.86557 0.85020 0.77049 0.78878 1.20133 1.21091 1.20203 1.21867 0.92738 1.04661 0.97395 1.21837 0.98676 1.00159 0.99938 1.67642 1.23441 1.09227 1.30824 0.91852 0.91872 0.91223 0.93343 0.93331 0.91102 0.91175 0.90494 0.90358 0.90726 0.83237 0.77335 0.92440 0.87195 0.94114 0.94238 0.93524 0.94353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 10.28 37.16 0.38 -1.03 16 2 C 0.06 0.64 6.66 37.16 0.25 0.88 16 3 O -0.38 -5.86 10.33 -35.23 -0.36 -6.22 16 4 C 0.14 2.17 6.37 36.01 0.23 2.40 16 5 C 0.35 6.73 7.27 -157.23 -1.14 5.58 16 6 N -0.56 -10.90 10.27 -7.07 -0.07 -10.97 16 7 C 0.18 3.42 6.81 -82.33 -0.56 2.85 16 8 C -0.10 -1.42 10.21 36.01 0.37 -1.05 16 9 C -0.27 -5.55 8.95 -39.11 -0.35 -5.90 16 10 C 0.45 9.65 7.65 -154.78 -1.18 8.47 16 11 N -0.69 -14.49 4.62 -54.91 -0.25 -14.74 16 12 C 0.27 6.29 1.70 -69.08 -0.12 6.18 16 13 H 0.04 1.09 6.46 -51.93 -0.34 0.76 16 14 C -0.53 -13.59 8.73 -34.44 -0.30 -13.89 16 15 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 16 C 0.07 1.73 5.29 -17.82 -0.09 1.64 16 17 N -0.89 -23.22 11.29 55.43 0.63 -22.59 16 18 Si 0.90 20.37 29.54 -169.99 -5.02 15.35 16 19 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.29 -6.41 7.11 56.52 0.40 -6.00 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 22 C -0.13 -2.76 5.30 -26.73 -0.14 -2.91 16 23 C -0.15 -2.76 9.85 37.16 0.37 -2.39 16 24 N -0.58 -12.09 10.37 -9.96 -0.10 -12.19 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.15 3.19 6.32 -52.49 -0.33 2.86 16 36 H 0.39 7.78 8.69 -40.82 -0.35 7.43 16 37 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 38 H 0.11 2.65 5.95 -51.93 -0.31 2.34 16 39 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.04 0.70 7.62 -51.93 -0.40 0.31 16 41 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.04 0.63 8.14 -51.94 -0.42 0.21 16 LS Contribution 349.78 15.07 5.27 5.27 Total: -1.00 -28.39 349.78 -8.98 -37.38 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -6.77 Total: 7.87 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: -2.30 Total: 0.84 kcal Atomic # 7 Polarization: -60.69 SS G_CDS: 0.20 Total: -60.49 kcal Atomic # 8 Polarization: -5.86 SS G_CDS: -0.36 Total: -6.22 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -28.39 -8.98 -37.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893187449.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.835 kcal (2) G-P(sol) polarization free energy of solvation -28.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds