Wall clock time and date at job start Tue Mar 31 2020 03:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42900 * 109.47378 * 2 1 4 4 C 1.42898 * 114.00170 * 180.02562 * 3 2 1 5 5 C 1.50702 * 109.46928 * 179.97438 * 4 3 2 6 6 N 1.31793 * 119.08118 * 269.97148 * 5 4 3 7 7 C 1.32541 * 121.00706 * 180.02562 * 6 5 4 8 8 C 1.50709 * 120.39599 * 180.02562 * 7 6 5 9 9 C 1.38113 * 119.20265 * 359.74175 * 7 6 5 10 10 C 1.39622 * 118.33336 * 0.52428 * 9 7 6 11 11 N 1.38540 * 120.53625 * 179.75883 * 10 9 7 12 12 C 1.46500 * 119.99795 * 355.14152 * 11 10 9 13 13 H 1.09000 * 109.47230 * 37.45292 * 12 11 10 14 14 C 1.50709 * 109.46785 * 277.46163 * 12 11 10 15 15 H 1.08000 * 120.00278 * 359.97438 * 14 12 11 16 16 C 1.37877 * 119.99701 * 180.02562 * 14 12 11 17 17 N 1.31516 * 120.00260 * 359.97438 * 16 14 12 18 18 Si 1.86803 * 119.99834 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47044 * 59.99664 * 18 16 14 20 20 H 1.48499 * 109.47020 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47188 * 299.99931 * 18 16 14 22 22 C 1.52998 * 109.47409 * 157.46174 * 12 11 10 23 23 C 1.52999 * 109.47125 * 294.85735 * 22 12 11 24 24 N 1.31750 * 119.08417 * 89.99969 * 5 4 3 25 25 H 1.08992 * 109.47265 * 300.00447 * 1 2 3 26 26 H 1.09005 * 109.46780 * 60.00637 * 1 2 3 27 27 H 1.08997 * 109.47150 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47028 * 239.99132 * 2 1 3 29 29 H 1.09005 * 109.46780 * 119.99363 * 2 1 3 30 30 H 1.08996 * 109.47422 * 59.98809 * 4 3 2 31 31 H 1.09002 * 109.46518 * 299.99185 * 4 3 2 32 32 H 1.08995 * 109.47284 * 89.99854 * 8 7 6 33 33 H 1.09002 * 109.46972 * 209.99839 * 8 7 6 34 34 H 1.08991 * 109.47153 * 329.99569 * 8 7 6 35 35 H 1.07998 * 120.83800 * 180.25041 * 9 7 6 36 36 H 0.96997 * 120.00081 * 175.13923 * 11 10 9 37 37 H 0.96998 * 119.99966 * 179.97438 * 17 16 14 38 38 H 1.08999 * 109.47333 * 174.85564 * 22 12 11 39 39 H 1.09000 * 109.47094 * 54.85699 * 22 12 11 40 40 H 1.09001 * 109.46995 * 55.44935 * 23 22 12 41 41 H 1.09002 * 109.46918 * 295.45829 * 23 22 12 42 42 H 1.08989 * 109.47411 * 175.45172 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8195 2.9161 -0.0012 6 7 3.9847 3.5346 -1.1532 7 6 4.3268 4.8143 -1.1982 8 6 4.5116 5.5080 -2.5234 9 6 4.5060 5.5059 -0.0163 10 6 4.3287 4.8195 1.1866 11 7 4.5018 5.4673 2.3989 12 6 4.9769 6.8529 2.4276 13 1 4.5391 7.4044 1.5956 14 6 6.4790 6.8714 2.3076 15 1 7.0252 5.9440 2.2191 16 6 7.1561 8.0725 2.3117 17 7 6.4911 9.2020 2.4199 18 14 9.0181 8.0955 2.1636 19 1 9.4206 7.4611 0.8827 20 1 9.4996 9.5000 2.1926 21 1 9.6142 7.3438 3.2971 22 6 4.5626 7.5068 3.7473 23 6 3.0371 7.6038 3.8116 24 7 3.9850 3.5352 1.1500 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5140 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.8334 0.9765 -0.8907 31 1 3.8339 0.9765 0.8893 32 1 3.5634 5.9406 -2.8424 33 1 5.2548 6.2985 -2.4191 34 1 4.8503 4.7867 -3.2669 35 1 4.7808 6.5503 -0.0222 36 1 4.3085 5.0036 3.2285 37 1 6.9675 10.0469 2.4231 38 1 4.9931 8.5063 3.8085 39 1 4.9238 6.9041 4.5806 40 1 2.6037 6.6138 3.6696 41 1 2.6821 8.2718 3.0268 42 1 2.7385 7.9949 4.7842 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893187449.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:26:25 Heat of formation + Delta-G solvation = -28.818234 kcal Electronic energy + Delta-G solvation = -21815.268179 eV Core-core repulsion = 18601.381458 eV Total energy + Delta-G solvation = -3213.886721 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.88776 -39.03520 -38.27543 -35.50163 -34.71355 -33.59236 -32.22575 -31.37746 -29.28315 -28.71124 -28.00076 -25.18914 -23.64885 -23.24808 -22.95254 -21.63118 -19.09673 -18.53701 -17.88128 -17.68113 -16.87512 -16.62910 -16.25494 -15.97102 -15.86992 -15.51010 -14.91964 -14.38392 -14.35160 -14.07117 -13.91869 -13.63192 -13.44775 -13.21965 -13.16806 -13.07243 -12.98758 -12.66873 -12.32222 -12.27953 -12.16175 -12.03048 -11.81148 -11.69336 -11.46396 -11.11935 -10.59942 -10.54617 -10.47129 -10.14471 -8.90347 -8.13143 -6.32250 0.08536 0.50755 1.40028 1.41758 1.48761 2.22865 2.39539 2.54822 3.04426 3.09694 3.36391 3.51993 3.92629 4.16051 4.20899 4.33629 4.40514 4.41286 4.41681 4.50285 4.54013 4.59332 4.68418 4.70001 4.77500 4.87877 4.98614 5.02422 5.05710 5.06938 5.21448 5.25614 5.28512 5.42178 5.55336 5.67025 5.78772 6.03406 6.19089 6.21402 6.43740 6.77072 6.87967 7.34134 7.43856 8.84754 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.019713 B = 0.004344 C = 0.003967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.018650 B = 6443.438006 C = 7055.707156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.050 3.950 3 O -0.408 6.408 4 C 0.146 3.854 5 C 0.339 3.661 6 N -0.568 5.568 7 C 0.185 3.815 8 C -0.095 4.095 9 C -0.292 4.292 10 C 0.434 3.566 11 N -0.686 5.686 12 C 0.285 3.715 13 H 0.022 0.978 14 C -0.544 4.544 15 H 0.041 0.959 16 C 0.031 3.969 17 N -0.905 5.905 18 Si 0.950 3.050 19 H -0.278 1.278 20 H -0.278 1.278 21 H -0.276 1.276 22 C -0.122 4.122 23 C -0.138 4.138 24 N -0.595 5.595 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.098 0.902 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.136 0.864 36 H 0.397 0.603 37 H 0.267 0.733 38 H 0.086 0.914 39 H 0.042 0.958 40 H 0.044 0.956 41 H 0.040 0.960 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.345 -11.944 -5.157 14.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.026 4.026 3 O -0.327 6.327 4 C 0.068 3.932 5 C 0.068 3.932 6 N -0.291 5.291 7 C 0.044 3.956 8 C -0.152 4.152 9 C -0.320 4.320 10 C 0.189 3.811 11 N -0.313 5.313 12 C 0.182 3.818 13 H 0.039 0.961 14 C -0.583 4.583 15 H 0.059 0.941 16 C -0.170 4.170 17 N -0.543 5.543 18 Si 0.776 3.224 19 H -0.203 1.203 20 H -0.203 1.203 21 H -0.201 1.201 22 C -0.161 4.161 23 C -0.195 4.195 24 N -0.323 5.323 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.116 0.884 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.110 0.890 31 H 0.100 0.900 32 H 0.114 0.886 33 H 0.102 0.898 34 H 0.109 0.891 35 H 0.153 0.847 36 H 0.232 0.768 37 H 0.077 0.923 38 H 0.104 0.896 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.618 -12.237 -5.129 15.300 hybrid contribution 1.477 0.924 0.580 1.836 sum -6.141 -11.313 -4.549 13.652 Atomic orbital electron populations 1.21768 0.92946 1.03553 1.02335 1.22753 0.96276 0.81983 1.01567 1.87906 1.19855 1.29212 1.95724 1.20870 0.82372 0.86962 1.02989 1.22831 0.90421 0.96872 0.83033 1.68048 1.20952 1.10516 1.29585 1.21864 0.88057 0.89194 0.96468 1.20772 1.03924 1.00096 0.90440 1.22161 1.13909 1.03196 0.92762 1.18787 0.86435 0.87785 0.88063 1.45082 1.67673 1.14812 1.03741 1.18645 0.92214 0.75813 0.95133 0.96070 1.21610 0.92753 0.92363 1.51556 0.94052 1.25468 1.02088 0.95083 0.94378 1.69919 1.36847 0.97817 1.49735 0.85739 0.80953 0.77201 0.78514 1.20309 1.20316 1.20143 1.21706 0.94845 1.02974 0.96549 1.21713 0.96197 1.00535 1.01065 1.67720 1.24004 1.08840 1.31730 0.92929 0.92576 0.88375 0.91537 0.92011 0.89047 0.89978 0.88562 0.89753 0.89068 0.84653 0.76772 0.92335 0.89584 0.93877 0.93652 0.94097 0.92049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 10.28 71.98 0.74 -1.76 16 2 C 0.05 0.97 6.66 71.98 0.48 1.45 16 3 O -0.41 -11.98 10.33 -148.98 -1.54 -13.51 16 4 C 0.15 4.21 6.37 71.24 0.45 4.67 16 5 C 0.34 12.80 7.27 138.76 1.01 13.81 16 6 N -0.57 -21.36 10.27 -176.27 -1.81 -23.17 16 7 C 0.18 6.84 6.81 42.42 0.29 7.13 16 8 C -0.10 -2.59 10.21 71.24 0.73 -1.86 16 9 C -0.29 -12.31 8.95 22.57 0.20 -12.11 16 10 C 0.43 18.94 7.65 133.16 1.02 19.96 16 11 N -0.69 -29.57 4.62 -327.62 -1.52 -31.09 16 12 C 0.28 13.43 1.70 44.25 0.08 13.51 16 13 H 0.02 1.11 6.46 -2.39 -0.02 1.09 16 14 C -0.54 -28.46 8.73 25.60 0.22 -28.24 16 15 H 0.04 2.27 7.81 -2.91 -0.02 2.24 16 16 C 0.03 1.60 5.29 84.65 0.45 2.05 16 17 N -0.90 -47.84 11.29 21.45 0.24 -47.60 16 18 Si 0.95 41.92 29.54 68.60 2.03 43.95 16 19 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 20 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 21 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 22 C -0.12 -5.32 5.30 30.59 0.16 -5.16 16 23 C -0.14 -5.02 9.85 71.98 0.71 -4.32 16 24 N -0.59 -24.66 10.37 -185.44 -1.92 -26.58 16 25 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 27 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 30 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.08 2.19 8.10 -2.39 -0.02 2.18 16 34 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.14 6.03 6.32 -2.91 -0.02 6.02 16 36 H 0.40 15.97 8.69 -92.71 -0.81 15.16 16 37 H 0.27 13.51 8.31 -92.71 -0.77 12.74 16 38 H 0.09 4.21 5.95 -2.39 -0.01 4.20 16 39 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.04 1.58 7.62 -2.39 -0.02 1.57 16 41 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -61.00 349.78 2.22 -58.77 By element: Atomic # 1 Polarization: 29.90 SS G_CDS: 0.20 Total: 30.11 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: 6.54 Total: 9.13 kcal Atomic # 7 Polarization: -123.43 SS G_CDS: -5.01 Total: -128.44 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: -1.54 Total: -13.51 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Total: -61.00 2.22 -58.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893187449.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.954 kcal (2) G-P(sol) polarization free energy of solvation -60.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds