Wall clock time and date at job start Tue Mar 31 2020 03:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47411 * 2 1 4 4 H 1.09001 * 109.47440 * 305.69360 * 3 2 1 5 5 C 1.50700 * 109.47105 * 185.69117 * 3 2 1 6 6 H 1.08005 * 119.99741 * 275.00495 * 5 3 2 7 7 C 1.37874 * 120.00127 * 95.00567 * 5 3 2 8 8 N 1.31519 * 119.99782 * 184.82689 * 7 5 3 9 9 Si 1.86791 * 119.99991 * 4.83162 * 7 5 3 10 10 H 1.48501 * 109.47552 * 84.86069 * 9 7 5 11 11 H 1.48502 * 109.47372 * 204.86165 * 9 7 5 12 12 H 1.48504 * 109.47016 * 324.86042 * 9 7 5 13 13 N 1.46503 * 109.47099 * 65.69381 * 3 2 1 14 14 C 1.34781 * 119.99720 * 274.99624 * 13 3 2 15 15 O 1.21571 * 120.00157 * 0.02562 * 14 13 3 16 16 C 1.47709 * 119.99761 * 179.97438 * 14 13 3 17 17 C 1.41508 * 126.51616 * 179.71158 * 16 14 13 18 18 C 1.35366 * 105.49900 * 179.90256 * 17 16 14 19 19 N 1.35028 * 107.23062 * 0.35846 * 18 17 16 20 20 C 1.46510 * 124.88370 * 179.75761 * 19 18 17 21 21 C 1.53002 * 109.46809 * 124.97635 * 20 19 18 22 22 C 1.53008 * 109.46832 * 65.00408 * 21 20 19 23 23 C 1.52997 * 109.47078 * 184.99904 * 21 20 19 24 24 N 1.28462 * 110.23239 * 359.76284 * 19 18 17 25 25 H 1.09009 * 109.47036 * 59.99601 * 1 2 3 26 26 H 1.09004 * 109.47039 * 300.00037 * 1 2 3 27 27 H 1.08997 * 109.47636 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46999 * 120.00379 * 2 1 3 29 29 H 1.09004 * 109.47039 * 239.99963 * 2 1 3 30 30 H 0.97003 * 119.99388 * 179.97438 * 8 7 5 31 31 H 0.97000 * 120.00154 * 94.99717 * 13 3 2 32 32 H 1.07995 * 127.24888 * 0.02562 * 17 16 14 33 33 H 1.08002 * 126.37909 * 180.08591 * 18 17 16 34 34 H 1.08993 * 109.47091 * 244.98222 * 20 19 18 35 35 H 1.09000 * 109.46815 * 4.97875 * 20 19 18 36 36 H 1.08993 * 109.47166 * 305.00382 * 21 20 19 37 37 H 1.08993 * 109.47205 * 59.99481 * 22 21 20 38 38 H 1.08997 * 109.46841 * 179.97438 * 22 21 20 39 39 H 1.09000 * 109.46597 * 299.99737 * 22 21 20 40 40 H 1.08998 * 109.46964 * 60.00303 * 23 21 20 41 41 H 1.08997 * 109.47306 * 180.02562 * 23 21 20 42 42 H 1.09003 * 109.47066 * 300.00539 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5959 1.9849 -0.8346 5 6 3.5405 1.4447 -0.1409 6 1 4.1651 1.3331 0.7331 7 6 4.1158 1.5891 -1.3855 8 7 5.4206 1.4962 -1.5215 9 14 3.0421 1.9170 -2.8784 10 1 2.7757 3.3739 -2.9863 11 1 3.7404 1.4495 -4.1028 12 1 1.7564 1.1882 -2.7331 13 7 1.6669 2.0923 1.2588 14 6 0.4510 2.6589 1.3901 15 8 -0.3362 2.6302 0.4640 16 6 0.0745 3.3137 2.6594 17 6 -1.1554 3.9528 2.9448 18 6 -1.0449 4.3976 4.2185 19 7 0.1830 4.0490 4.6588 20 6 0.7106 4.3467 5.9928 21 6 1.1691 3.0490 6.6611 22 6 2.3478 2.4626 5.8813 23 6 1.6038 3.3416 8.0986 24 7 0.8222 3.4188 3.7398 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 5.8253 1.5975 -2.3973 31 1 2.2948 2.1150 1.9978 32 1 -2.0041 4.0611 2.2858 33 1 -1.7970 4.9353 4.7768 34 1 1.5562 5.0288 5.9052 35 1 -0.0693 4.8105 6.5967 36 1 0.3467 2.3339 6.6686 37 1 3.1702 3.1778 5.8737 38 1 2.6748 1.5384 6.3577 39 1 2.0381 2.2542 4.8572 40 1 0.7642 3.7593 8.6541 41 1 1.9309 2.4172 8.5746 42 1 2.4263 4.0568 8.0910 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897400111.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:47 Heat of formation + Delta-G solvation = 27.879500 kcal Electronic energy + Delta-G solvation = -22259.706089 eV Core-core repulsion = 19048.277966 eV Total energy + Delta-G solvation = -3211.428123 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.52446 -38.79507 -36.64966 -35.05677 -32.45376 -32.11387 -31.24050 -30.49333 -27.70132 -27.26442 -26.63554 -23.28887 -22.39358 -21.38255 -20.57134 -19.92230 -19.30454 -17.84469 -16.98229 -16.10458 -15.84431 -15.36746 -15.07995 -14.43254 -14.12902 -13.93559 -13.73609 -13.40893 -13.03378 -12.84055 -12.68708 -12.63939 -12.30779 -12.10896 -11.84582 -11.74177 -11.59918 -11.19882 -11.04738 -10.89142 -10.61453 -10.60135 -10.26965 -9.94474 -9.77757 -9.25834 -9.11995 -9.06607 -8.86384 -8.63657 -7.88838 -6.17366 -4.20347 1.90842 2.36508 2.50006 3.32102 3.39368 3.47499 4.04547 4.09522 4.24841 4.38794 4.40651 4.68601 4.80360 4.90528 5.05921 5.11732 5.21715 5.29326 5.48949 5.57706 5.64803 5.74015 5.84880 5.90315 5.95176 6.04741 6.14136 6.16857 6.32227 6.39952 6.64893 6.74393 6.85437 6.91928 7.05440 7.09654 7.37463 7.44631 7.64073 8.03066 8.27602 8.69748 8.84682 9.08704 9.45209 10.94424 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.020219 B = 0.004728 C = 0.004268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.487344 B = 5920.561865 C = 6558.810200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.125 4.125 3 C 0.236 3.764 4 H 0.052 0.948 5 C -0.528 4.528 6 H 0.079 0.921 7 C 0.082 3.918 8 N -0.890 5.890 9 Si 0.872 3.128 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.258 1.258 13 N -0.688 5.688 14 C 0.586 3.414 15 O -0.548 6.548 16 C -0.008 4.008 17 C -0.183 4.183 18 C -0.028 4.028 19 N -0.286 5.286 20 C 0.125 3.875 21 C -0.107 4.107 22 C -0.162 4.162 23 C -0.145 4.145 24 N -0.255 5.255 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.030 0.970 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.267 0.733 31 H 0.398 0.602 32 H 0.158 0.842 33 H 0.176 0.824 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.075 0.925 37 H 0.055 0.945 38 H 0.052 0.948 39 H 0.090 0.910 40 H 0.055 0.945 41 H 0.063 0.937 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.588 5.267 17.832 21.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.164 4.164 3 C 0.134 3.866 4 H 0.069 0.931 5 C -0.566 4.566 6 H 0.097 0.903 7 C -0.123 4.123 8 N -0.526 5.526 9 Si 0.699 3.301 10 H -0.199 1.199 11 H -0.213 1.213 12 H -0.182 1.182 13 N -0.335 5.335 14 C 0.369 3.631 15 O -0.425 6.425 16 C -0.169 4.169 17 C -0.211 4.211 18 C -0.170 4.170 19 N -0.074 5.074 20 C 0.004 3.996 21 C -0.126 4.126 22 C -0.219 4.219 23 C -0.203 4.203 24 N -0.090 5.090 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.049 0.951 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.232 0.768 32 H 0.176 0.824 33 H 0.194 0.806 34 H 0.110 0.890 35 H 0.117 0.883 36 H 0.093 0.907 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.109 0.891 40 H 0.074 0.926 41 H 0.082 0.918 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.858 4.989 17.550 20.738 hybrid contribution -0.939 0.531 -0.631 1.250 sum -10.798 5.520 16.919 20.816 Atomic orbital electron populations 1.21915 0.97410 0.98829 1.02129 1.22069 0.93697 0.99382 1.01232 1.19211 0.95563 0.89142 0.82695 0.93054 1.21019 0.88670 1.51459 0.95475 0.90308 1.24925 0.94863 0.93702 0.98762 1.69892 1.09759 1.48573 1.24405 0.86918 0.81352 0.79686 0.82176 1.19860 1.21265 1.18221 1.46501 1.14018 1.54747 1.18276 1.17005 0.82940 0.78590 0.84535 1.90740 1.51371 1.60764 1.39659 1.22438 0.94186 1.05734 0.94527 1.21766 0.99519 1.03946 0.95861 1.22777 0.90200 1.07055 0.97004 1.45535 1.10597 1.39579 1.11673 1.22143 1.00657 0.98838 0.77934 1.21397 1.00012 0.95764 0.95430 1.22122 0.96737 1.00422 1.02645 1.21789 1.01395 1.02397 0.94694 1.73476 1.23954 1.13950 0.97628 0.93051 0.93088 0.95121 0.92991 0.92042 0.92318 0.76767 0.82397 0.80645 0.88971 0.88257 0.90671 0.92618 0.92865 0.89110 0.92597 0.91791 0.92155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 8.53 37.16 0.32 -2.71 16 2 C -0.12 -2.80 5.59 -26.73 -0.15 -2.95 16 3 C 0.24 5.80 1.89 -69.08 -0.13 5.67 16 4 H 0.05 1.37 4.73 -51.93 -0.25 1.12 16 5 C -0.53 -14.56 9.05 -34.44 -0.31 -14.88 16 6 H 0.08 2.30 8.06 -52.48 -0.42 1.87 16 7 C 0.08 2.33 5.47 -17.82 -0.10 2.23 16 8 N -0.89 -26.60 13.96 55.43 0.77 -25.82 16 9 Si 0.87 21.95 26.99 -169.99 -4.59 17.37 16 10 H -0.27 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.26 -6.37 6.82 56.52 0.39 -5.98 16 13 N -0.69 -15.06 5.03 -55.92 -0.28 -15.35 16 14 C 0.59 12.43 6.43 -12.39 -0.08 12.35 16 15 O -0.55 -12.88 14.06 5.30 0.07 -12.81 16 16 C -0.01 -0.15 7.13 -82.76 -0.59 -0.74 16 17 C -0.18 -2.68 10.81 -39.36 -0.43 -3.11 16 18 C -0.03 -0.31 11.40 -17.17 -0.20 -0.51 16 19 N -0.29 -3.45 3.41 -61.33 -0.21 -3.65 16 20 C 0.12 1.00 5.89 -4.04 -0.02 0.98 16 21 C -0.11 -0.89 3.11 -90.62 -0.28 -1.17 16 22 C -0.16 -1.76 8.88 37.16 0.33 -1.43 16 23 C -0.14 -0.88 9.19 37.16 0.34 -0.54 16 24 N -0.25 -3.98 8.66 33.42 0.29 -3.69 16 25 H 0.05 1.12 7.88 -51.92 -0.41 0.71 16 26 H 0.05 1.07 5.63 -51.93 -0.29 0.78 16 27 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 29 H 0.06 1.41 8.14 -51.93 -0.42 0.98 16 30 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 31 H 0.40 8.21 8.32 -40.82 -0.34 7.87 16 32 H 0.16 2.16 8.06 -52.49 -0.42 1.74 16 33 H 0.18 1.20 8.06 -52.49 -0.42 0.78 16 34 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.10 0.48 8.04 -51.93 -0.42 0.07 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.09 1.25 5.45 -51.93 -0.28 0.96 16 40 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 41 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 340.45 15.07 5.13 5.13 Total: -1.00 -32.58 340.45 -6.74 -39.32 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -6.63 Total: 6.31 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: -1.30 Total: -6.80 kcal Atomic # 7 Polarization: -49.09 SS G_CDS: 0.57 Total: -48.52 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: 0.07 Total: -12.81 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.59 Total: 17.37 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.58 -6.74 -39.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897400111.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.203 kcal (2) G-P(sol) polarization free energy of solvation -32.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds