Wall clock time and date at job start Tue Mar 31 2020 03:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47411 * 2 1 4 4 H 1.09001 * 109.47440 * 305.69360 * 3 2 1 5 5 C 1.50700 * 109.47105 * 185.69117 * 3 2 1 6 6 H 1.08005 * 119.99741 * 275.00495 * 5 3 2 7 7 C 1.37874 * 120.00127 * 95.00567 * 5 3 2 8 8 N 1.31519 * 119.99782 * 184.82689 * 7 5 3 9 9 Si 1.86791 * 119.99991 * 4.83162 * 7 5 3 10 10 H 1.48501 * 109.47552 * 84.86069 * 9 7 5 11 11 H 1.48502 * 109.47372 * 204.86165 * 9 7 5 12 12 H 1.48504 * 109.47016 * 324.86042 * 9 7 5 13 13 N 1.46503 * 109.47099 * 65.69381 * 3 2 1 14 14 C 1.34781 * 119.99720 * 274.99624 * 13 3 2 15 15 O 1.21571 * 120.00157 * 0.02562 * 14 13 3 16 16 C 1.47709 * 119.99761 * 179.97438 * 14 13 3 17 17 C 1.41508 * 126.51616 * 179.71158 * 16 14 13 18 18 C 1.35366 * 105.49900 * 179.90256 * 17 16 14 19 19 N 1.35028 * 107.23062 * 0.35846 * 18 17 16 20 20 C 1.46510 * 124.88370 * 179.75761 * 19 18 17 21 21 C 1.53002 * 109.46809 * 124.97635 * 20 19 18 22 22 C 1.53008 * 109.46832 * 65.00408 * 21 20 19 23 23 C 1.52997 * 109.47078 * 184.99904 * 21 20 19 24 24 N 1.28462 * 110.23239 * 359.76284 * 19 18 17 25 25 H 1.09009 * 109.47036 * 59.99601 * 1 2 3 26 26 H 1.09004 * 109.47039 * 300.00037 * 1 2 3 27 27 H 1.08997 * 109.47636 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46999 * 120.00379 * 2 1 3 29 29 H 1.09004 * 109.47039 * 239.99963 * 2 1 3 30 30 H 0.97003 * 119.99388 * 179.97438 * 8 7 5 31 31 H 0.97000 * 120.00154 * 94.99717 * 13 3 2 32 32 H 1.07995 * 127.24888 * 0.02562 * 17 16 14 33 33 H 1.08002 * 126.37909 * 180.08591 * 18 17 16 34 34 H 1.08993 * 109.47091 * 244.98222 * 20 19 18 35 35 H 1.09000 * 109.46815 * 4.97875 * 20 19 18 36 36 H 1.08993 * 109.47166 * 305.00382 * 21 20 19 37 37 H 1.08993 * 109.47205 * 59.99481 * 22 21 20 38 38 H 1.08997 * 109.46841 * 179.97438 * 22 21 20 39 39 H 1.09000 * 109.46597 * 299.99737 * 22 21 20 40 40 H 1.08998 * 109.46964 * 60.00303 * 23 21 20 41 41 H 1.08997 * 109.47306 * 180.02562 * 23 21 20 42 42 H 1.09003 * 109.47066 * 300.00539 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5959 1.9849 -0.8346 5 6 3.5405 1.4447 -0.1409 6 1 4.1651 1.3331 0.7331 7 6 4.1158 1.5891 -1.3855 8 7 5.4206 1.4962 -1.5215 9 14 3.0421 1.9170 -2.8784 10 1 2.7757 3.3739 -2.9863 11 1 3.7404 1.4495 -4.1028 12 1 1.7564 1.1882 -2.7331 13 7 1.6669 2.0923 1.2588 14 6 0.4510 2.6589 1.3901 15 8 -0.3362 2.6302 0.4640 16 6 0.0745 3.3137 2.6594 17 6 -1.1554 3.9528 2.9448 18 6 -1.0449 4.3976 4.2185 19 7 0.1830 4.0490 4.6588 20 6 0.7106 4.3467 5.9928 21 6 1.1691 3.0490 6.6611 22 6 2.3478 2.4626 5.8813 23 6 1.6038 3.3416 8.0986 24 7 0.8222 3.4188 3.7398 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 5.8253 1.5975 -2.3973 31 1 2.2948 2.1150 1.9978 32 1 -2.0041 4.0611 2.2858 33 1 -1.7970 4.9353 4.7768 34 1 1.5562 5.0288 5.9052 35 1 -0.0693 4.8105 6.5967 36 1 0.3467 2.3339 6.6686 37 1 3.1702 3.1778 5.8737 38 1 2.6748 1.5384 6.3577 39 1 2.0381 2.2542 4.8572 40 1 0.7642 3.7593 8.6541 41 1 1.9309 2.4172 8.5746 42 1 2.4263 4.0568 8.0910 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897400111.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:46 Heat of formation + Delta-G solvation = 6.125203 kcal Electronic energy + Delta-G solvation = -22260.649427 eV Core-core repulsion = 19048.277966 eV Total energy + Delta-G solvation = -3212.371460 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.57813 -40.49872 -37.41646 -36.89789 -34.41432 -33.56446 -32.63230 -31.60998 -29.55115 -28.00300 -27.66093 -24.97719 -23.96430 -22.36546 -21.71213 -21.32016 -20.87154 -19.33557 -18.44956 -17.50675 -17.28734 -16.91007 -16.23064 -15.99700 -15.65328 -14.99262 -14.81453 -14.78073 -14.55395 -14.22034 -13.93680 -13.79130 -13.66108 -13.59687 -13.14092 -12.93831 -12.90287 -12.57084 -12.46148 -12.37124 -11.87125 -11.86773 -11.73670 -11.70007 -11.29112 -11.21192 -10.96296 -10.82898 -10.13977 -9.96690 -9.66380 -8.39331 -6.45505 0.67187 1.29024 1.30518 1.33252 1.45252 1.63331 2.27441 2.48399 2.55711 3.03161 3.41632 3.76366 3.89365 4.00449 4.17693 4.23482 4.30984 4.41198 4.46800 4.53458 4.59794 4.69867 4.78830 4.80463 4.84401 4.87611 5.03194 5.06795 5.09499 5.22251 5.23986 5.26751 5.35943 5.40703 5.42181 5.55094 5.62965 5.75172 6.01993 6.13957 6.58193 6.80025 7.07590 7.20311 7.42743 8.75963 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.020219 B = 0.004728 C = 0.004268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.487344 B = 5920.561865 C = 6558.810200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.122 4.122 3 C 0.242 3.758 4 H 0.033 0.967 5 C -0.528 4.528 6 H 0.051 0.949 7 C 0.035 3.965 8 N -0.930 5.930 9 Si 0.926 3.074 10 H -0.275 1.275 11 H -0.274 1.274 12 H -0.252 1.252 13 N -0.692 5.692 14 C 0.586 3.414 15 O -0.577 6.577 16 C -0.049 4.049 17 C -0.205 4.205 18 C 0.002 3.998 19 N -0.276 5.276 20 C 0.115 3.885 21 C -0.101 4.101 22 C -0.165 4.165 23 C -0.139 4.139 24 N -0.268 5.268 25 H 0.037 0.963 26 H 0.044 0.956 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.271 0.729 31 H 0.402 0.598 32 H 0.161 0.839 33 H 0.231 0.769 34 H 0.098 0.902 35 H 0.146 0.854 36 H 0.068 0.932 37 H 0.053 0.947 38 H 0.051 0.949 39 H 0.060 0.940 40 H 0.078 0.922 41 H 0.059 0.941 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.771 6.426 20.087 24.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.161 4.161 3 C 0.138 3.862 4 H 0.051 0.949 5 C -0.567 4.567 6 H 0.070 0.930 7 C -0.165 4.165 8 N -0.568 5.568 9 Si 0.750 3.250 10 H -0.201 1.201 11 H -0.199 1.199 12 H -0.176 1.176 13 N -0.340 5.340 14 C 0.372 3.628 15 O -0.456 6.456 16 C -0.207 4.207 17 C -0.233 4.233 18 C -0.141 4.141 19 N -0.065 5.065 20 C -0.004 4.004 21 C -0.120 4.120 22 C -0.223 4.223 23 C -0.197 4.197 24 N -0.105 5.105 25 H 0.056 0.944 26 H 0.063 0.937 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.237 0.763 32 H 0.178 0.822 33 H 0.247 0.753 34 H 0.117 0.883 35 H 0.164 0.836 36 H 0.087 0.913 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.097 0.903 41 H 0.078 0.922 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.041 6.145 19.828 23.998 hybrid contribution -0.230 0.206 -1.128 1.170 sum -12.271 6.352 18.700 23.251 Atomic orbital electron populations 1.21772 0.95724 1.00429 1.01156 1.21980 0.95114 0.97771 1.01273 1.18985 0.93400 0.90422 0.83388 0.94889 1.21182 0.90195 1.50704 0.94584 0.93046 1.25597 0.95838 0.93735 1.01372 1.69987 1.11260 1.50255 1.25316 0.86059 0.80090 0.79331 0.79490 1.20085 1.19945 1.17588 1.46291 1.14895 1.55382 1.17449 1.17414 0.81922 0.77780 0.85691 1.90699 1.51939 1.61810 1.41185 1.22018 0.96333 1.08374 0.93991 1.21968 0.98700 1.04864 0.97792 1.23470 0.90190 1.04736 0.95687 1.46025 1.10775 1.37562 1.12108 1.22625 1.02648 0.98831 0.76256 1.21340 0.98439 0.95732 0.96509 1.22119 0.98058 1.00721 1.01358 1.21745 1.02426 1.02535 0.92954 1.73474 1.24511 1.14684 0.97853 0.94372 0.93684 0.92138 0.92347 0.92566 0.91976 0.76342 0.82177 0.75267 0.88338 0.83570 0.91304 0.92789 0.92973 0.92136 0.90310 0.92162 0.91722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.48 8.53 71.98 0.61 -4.87 16 2 C -0.12 -5.54 5.59 30.59 0.17 -5.37 16 3 C 0.24 12.16 1.89 44.24 0.08 12.24 16 4 H 0.03 1.79 4.73 -2.39 -0.01 1.78 16 5 C -0.53 -30.14 9.05 25.60 0.23 -29.91 16 6 H 0.05 3.15 8.06 -2.91 -0.02 3.12 16 7 C 0.04 2.04 5.47 84.65 0.46 2.50 16 8 N -0.93 -56.95 13.96 21.45 0.30 -56.65 16 9 Si 0.93 45.97 26.99 68.60 1.85 47.83 16 10 H -0.28 -13.67 7.11 99.48 0.71 -12.96 16 11 H -0.27 -12.96 7.11 99.48 0.71 -12.25 16 12 H -0.25 -12.17 6.82 99.48 0.68 -11.49 16 13 N -0.69 -31.37 5.03 -449.10 -2.26 -33.63 16 14 C 0.59 25.48 6.43 86.75 0.56 26.04 16 15 O -0.58 -27.71 14.06 -3.94 -0.06 -27.77 16 16 C -0.05 -1.74 7.13 42.46 0.30 -1.43 16 17 C -0.21 -5.70 10.81 22.41 0.24 -5.46 16 18 C 0.00 0.04 11.40 83.54 0.95 0.99 16 19 N -0.28 -5.87 3.41 -347.94 -1.19 -7.05 16 20 C 0.11 1.39 5.89 86.38 0.51 1.90 16 21 C -0.10 -1.43 3.11 -10.79 -0.03 -1.46 16 22 C -0.17 -3.53 8.88 71.98 0.64 -2.89 16 23 C -0.14 -1.22 9.19 71.98 0.66 -0.56 16 24 N -0.27 -8.23 8.66 -48.17 -0.42 -8.65 16 25 H 0.04 1.64 7.88 -2.38 -0.02 1.62 16 26 H 0.04 1.89 5.63 -2.38 -0.01 1.87 16 27 H 0.06 2.09 8.14 -2.39 -0.02 2.08 16 28 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 29 H 0.06 2.57 8.14 -2.38 -0.02 2.55 16 30 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 31 H 0.40 17.42 8.32 -92.71 -0.77 16.65 16 32 H 0.16 4.23 8.06 -2.91 -0.02 4.21 16 33 H 0.23 1.62 8.06 -2.91 -0.02 1.60 16 34 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.15 0.49 8.04 -2.39 -0.02 0.47 16 36 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.06 1.70 5.45 -2.39 -0.01 1.68 16 40 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 41 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 Total: -1.00 -74.03 340.45 3.84 -70.19 By element: Atomic # 1 Polarization: 23.80 SS G_CDS: 0.21 Total: 24.01 kcal Atomic # 6 Polarization: -13.67 SS G_CDS: 5.39 Total: -8.28 kcal Atomic # 7 Polarization: -102.42 SS G_CDS: -3.56 Total: -105.98 kcal Atomic # 8 Polarization: -27.71 SS G_CDS: -0.06 Total: -27.77 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 1.85 Total: 47.83 kcal Total: -74.03 3.84 -70.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897400111.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.314 kcal (2) G-P(sol) polarization free energy of solvation -74.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds