Wall clock time and date at job start Tue Mar 31 2020 03:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31518 * 119.99761 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00461 * 179.97438 * 7 5 3 10 10 H 1.48490 * 109.47273 * 89.99733 * 9 7 5 11 11 H 1.48496 * 109.47169 * 210.00187 * 9 7 5 12 12 H 1.48505 * 109.46665 * 329.99637 * 9 7 5 13 13 N 1.46497 * 109.47408 * 295.00294 * 3 2 1 14 14 C 1.34775 * 120.00077 * 84.99397 * 13 3 2 15 15 O 1.21568 * 120.00022 * 0.02562 * 14 13 3 16 16 C 1.47710 * 119.99851 * 180.02562 * 14 13 3 17 17 C 1.41508 * 126.51831 * 179.71174 * 16 14 13 18 18 C 1.35358 * 105.50334 * 179.89971 * 17 16 14 19 19 N 1.35037 * 107.23089 * 0.35598 * 18 17 16 20 20 C 1.46498 * 124.88643 * 179.75813 * 19 18 17 21 21 C 1.52999 * 109.46945 * 124.97993 * 20 19 18 22 22 C 1.53002 * 109.47080 * 65.00251 * 21 20 19 23 23 C 1.53004 * 109.47290 * 184.99921 * 21 20 19 24 24 N 1.28467 * 110.22695 * 359.76688 * 19 18 17 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 29 29 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 30 30 H 0.96999 * 120.00301 * 180.02562 * 8 7 5 31 31 H 0.97001 * 120.00250 * 264.99821 * 13 3 2 32 32 H 1.08000 * 127.24582 * 0.02562 * 17 16 14 33 33 H 1.08005 * 126.38755 * 180.08861 * 18 17 16 34 34 H 1.09006 * 109.47258 * 244.98176 * 20 19 18 35 35 H 1.09004 * 109.47491 * 4.98288 * 20 19 18 36 36 H 1.09001 * 109.46932 * 305.00133 * 21 20 19 37 37 H 1.09003 * 109.46848 * 179.97438 * 22 21 20 38 38 H 1.09000 * 109.46745 * 300.00001 * 22 21 20 39 39 H 1.09001 * 109.47334 * 60.00128 * 22 21 20 40 40 H 1.09001 * 109.46801 * 59.99899 * 23 21 20 41 41 H 1.08993 * 109.47540 * 179.97438 * 23 21 20 42 42 H 1.08995 * 109.46919 * 300.00575 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 3.4063 0.3373 2.1733 9 14 6.0050 0.8799 1.3812 10 1 6.4429 2.1127 2.0836 11 1 6.4391 -0.3112 2.1545 12 1 6.6131 0.8392 0.0269 13 7 1.6525 2.0975 -1.2517 14 6 0.4352 2.6644 -1.3669 15 8 -0.3410 2.6325 -0.4318 16 6 0.0443 3.3244 -2.6292 17 6 -1.1930 3.9547 -2.9018 18 6 -1.0936 4.4128 -4.1716 19 7 0.1294 4.0661 -4.6274 20 6 0.6412 4.3682 -5.9664 21 6 1.9693 5.1185 -5.8474 22 6 3.0170 4.2031 -5.2106 23 6 2.4417 5.5431 -7.2394 24 7 0.7794 3.4332 -3.7178 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.8293 -0.0605 2.9503 31 1 2.2720 2.1232 -1.9977 32 1 -2.0378 4.0517 -2.2361 33 1 -1.8526 4.9511 -4.7199 34 1 0.7968 3.4387 -6.5141 35 1 -0.0796 4.9879 -6.4997 36 1 1.8326 6.0026 -5.2247 37 1 3.9632 4.7375 -5.1263 38 1 2.6804 3.9006 -4.2190 39 1 3.1537 3.3190 -5.8333 40 1 1.6953 6.1952 -7.6931 41 1 3.3876 6.0780 -7.1546 42 1 2.5783 4.6590 -7.8620 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897400112.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:51 Heat of formation + Delta-G solvation = 8.068911 kcal Electronic energy + Delta-G solvation = -22194.239124 eV Core-core repulsion = 18981.951950 eV Total energy + Delta-G solvation = -3212.287175 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.57025 -40.41757 -37.40419 -36.87384 -34.33495 -33.33674 -32.49947 -31.60040 -29.13839 -27.98299 -27.60044 -25.21564 -23.92911 -22.35366 -21.74666 -21.27265 -20.75116 -19.18491 -18.17314 -17.38251 -17.14243 -16.95218 -16.20783 -15.94600 -15.68349 -14.92169 -14.80957 -14.62327 -14.52820 -14.19025 -13.73005 -13.67898 -13.47965 -13.17537 -13.11902 -12.90067 -12.89307 -12.69365 -12.46056 -12.17137 -12.06535 -11.86736 -11.71871 -11.59761 -11.28419 -11.06589 -10.92254 -10.53178 -10.12390 -9.95673 -9.59608 -8.15941 -6.33223 0.68974 1.30215 1.43891 1.44659 1.55494 1.64373 2.36693 2.57687 2.67699 3.13092 3.42134 3.77006 3.90851 4.00775 4.18329 4.27048 4.47070 4.48980 4.56820 4.59251 4.70053 4.74668 4.80273 4.84912 4.86069 5.03444 5.06365 5.07212 5.23213 5.24569 5.36288 5.42029 5.43734 5.54862 5.60461 5.63102 5.79138 5.90960 6.05113 6.15793 6.72846 6.84104 7.12074 7.32213 7.53056 8.89802 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.016985 B = 0.004883 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.127844 B = 5732.841802 C = 7078.959607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.120 4.120 3 C 0.277 3.723 4 H 0.002 0.998 5 C -0.550 4.550 6 H 0.066 0.934 7 C 0.018 3.982 8 N -0.913 5.913 9 Si 0.971 3.029 10 H -0.277 1.277 11 H -0.280 1.280 12 H -0.263 1.263 13 N -0.693 5.693 14 C 0.584 3.416 15 O -0.580 6.580 16 C -0.048 4.048 17 C -0.207 4.207 18 C 0.003 3.997 19 N -0.276 5.276 20 C 0.115 3.885 21 C -0.103 4.103 22 C -0.165 4.165 23 C -0.138 4.138 24 N -0.266 5.266 25 H 0.038 0.962 26 H 0.029 0.971 27 H 0.048 0.952 28 H 0.076 0.924 29 H 0.037 0.963 30 H 0.266 0.734 31 H 0.401 0.599 32 H 0.158 0.842 33 H 0.232 0.768 34 H 0.102 0.898 35 H 0.146 0.854 36 H 0.065 0.935 37 H 0.050 0.950 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.077 0.923 41 H 0.058 0.942 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.237 9.810 -21.751 24.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.159 4.159 3 C 0.174 3.826 4 H 0.020 0.980 5 C -0.588 4.588 6 H 0.084 0.916 7 C -0.182 4.182 8 N -0.551 5.551 9 Si 0.795 3.205 10 H -0.203 1.203 11 H -0.205 1.205 12 H -0.187 1.187 13 N -0.341 5.341 14 C 0.369 3.631 15 O -0.460 6.460 16 C -0.206 4.206 17 C -0.236 4.236 18 C -0.140 4.140 19 N -0.065 5.065 20 C -0.003 4.003 21 C -0.122 4.122 22 C -0.222 4.222 23 C -0.196 4.196 24 N -0.103 5.103 25 H 0.057 0.943 26 H 0.048 0.952 27 H 0.067 0.933 28 H 0.095 0.905 29 H 0.056 0.944 30 H 0.075 0.925 31 H 0.235 0.765 32 H 0.176 0.824 33 H 0.248 0.752 34 H 0.120 0.880 35 H 0.164 0.836 36 H 0.084 0.916 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.096 0.904 41 H 0.077 0.923 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.661 9.416 -21.462 23.896 hybrid contribution 0.419 0.001 0.874 0.969 sum -4.242 9.417 -20.588 23.034 Atomic orbital electron populations 1.21677 0.96921 0.99268 1.00218 1.21777 0.93837 0.98949 1.01294 1.18455 0.93850 0.89307 0.80959 0.98027 1.21524 0.91285 1.39184 1.06785 0.91617 1.25747 1.03391 0.94207 0.94854 1.70041 1.37070 1.38226 1.09774 0.85367 0.78999 0.77595 0.78512 1.20319 1.20541 1.18744 1.46177 1.14998 1.55232 1.17660 1.17429 0.82016 0.77954 0.85684 1.90710 1.52752 1.61912 1.40581 1.22013 0.96182 1.08286 0.94112 1.21964 0.98512 1.05037 0.98050 1.23451 0.90482 1.04665 0.95385 1.46037 1.10795 1.37318 1.12324 1.22628 0.97917 1.03016 0.76721 1.21351 0.93655 0.98004 0.99172 1.22118 0.98486 0.99461 1.02175 1.21739 1.02006 1.02143 0.93700 1.73453 1.23821 1.14860 0.98162 0.94299 0.95161 0.93283 0.90522 0.94385 0.92464 0.76470 0.82437 0.75206 0.88013 0.83633 0.91628 0.93110 0.92246 0.92384 0.90387 0.92255 0.91492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.95 8.51 71.98 0.61 -5.34 16 2 C -0.12 -6.27 5.45 30.59 0.17 -6.11 16 3 C 0.28 15.28 2.24 44.24 0.10 15.38 16 4 H 0.00 0.12 7.58 -2.39 -0.02 0.10 16 5 C -0.55 -30.81 8.73 25.60 0.22 -30.59 16 6 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 7 C 0.02 1.02 5.29 84.65 0.45 1.46 16 8 N -0.91 -53.51 11.29 21.45 0.24 -53.27 16 9 Si 0.97 43.50 29.54 68.60 2.03 45.52 16 10 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 11 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 12 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 13 N -0.69 -32.98 5.02 -449.13 -2.25 -35.23 16 14 C 0.58 27.02 6.39 86.75 0.55 27.58 16 15 O -0.58 -30.40 14.06 -3.93 -0.06 -30.45 16 16 C -0.05 -1.76 7.13 42.46 0.30 -1.46 16 17 C -0.21 -6.09 10.81 22.41 0.24 -5.85 16 18 C 0.00 0.06 11.40 83.53 0.95 1.01 16 19 N -0.28 -5.96 3.41 -347.94 -1.19 -7.15 16 20 C 0.12 1.38 5.89 86.38 0.51 1.89 16 21 C -0.10 -1.47 3.11 -10.79 -0.03 -1.50 16 22 C -0.16 -3.49 8.88 71.98 0.64 -2.85 16 23 C -0.14 -1.20 9.19 71.98 0.66 -0.54 16 24 N -0.27 -8.29 8.66 -48.17 -0.42 -8.70 16 25 H 0.04 1.85 5.65 -2.39 -0.01 1.84 16 26 H 0.03 1.54 7.84 -2.39 -0.02 1.52 16 27 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 28 H 0.08 4.39 5.95 -2.39 -0.01 4.38 16 29 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 31 H 0.40 17.59 8.26 -92.71 -0.77 16.82 16 32 H 0.16 4.48 8.06 -2.91 -0.02 4.46 16 33 H 0.23 1.78 8.06 -2.91 -0.02 1.75 16 34 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16 35 H 0.15 0.49 8.04 -2.38 -0.02 0.47 16 36 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.06 1.68 5.45 -2.39 -0.01 1.66 16 39 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 41 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 Total: -1.00 -73.74 340.54 3.98 -69.77 By element: Atomic # 1 Polarization: 26.19 SS G_CDS: 0.24 Total: 26.44 kcal Atomic # 6 Polarization: -12.29 SS G_CDS: 5.38 Total: -6.91 kcal Atomic # 7 Polarization: -100.74 SS G_CDS: -3.61 Total: -104.36 kcal Atomic # 8 Polarization: -30.40 SS G_CDS: -0.06 Total: -30.45 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.52 kcal Total: -73.74 3.98 -69.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897400112.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.834 kcal (2) G-P(sol) polarization free energy of solvation -73.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds