Wall clock time and date at job start Tue Mar 31 2020 02:41:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47717 * 2 1 4 4 C 1.53011 * 109.46711 * 120.00089 * 2 1 3 5 5 N 1.46500 * 109.47171 * 64.99842 * 4 2 1 6 6 C 1.46504 * 120.00028 * 270.00054 * 5 4 2 7 7 C 1.50693 * 109.46792 * 270.00188 * 6 5 4 8 8 H 1.08002 * 120.00566 * 359.97438 * 7 6 5 9 9 C 1.37883 * 119.99886 * 179.97438 * 7 6 5 10 10 N 1.31520 * 119.99580 * 0.02562 * 9 7 6 11 11 Si 1.86792 * 120.00170 * 179.97438 * 9 7 6 12 12 H 1.48508 * 109.47069 * 60.00651 * 11 9 7 13 13 H 1.48507 * 109.47280 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47706 * 300.00540 * 11 9 7 15 15 C 1.34776 * 119.99870 * 90.00108 * 5 4 2 16 16 O 1.21284 * 119.99993 * 180.02562 * 15 5 4 17 17 C 1.50698 * 120.00297 * 359.97438 * 15 5 4 18 18 C 1.52998 * 109.47192 * 180.02562 * 17 15 5 19 19 C 1.50698 * 109.47192 * 179.97438 * 18 17 15 20 20 C 1.39874 * 126.04031 * 269.99886 * 19 18 17 21 21 N 1.30836 * 108.20052 * 179.73886 * 20 19 18 22 22 N 1.40084 * 108.20904 * 0.40640 * 21 20 19 23 23 H 0.97001 * 126.04219 * 179.85882 * 22 21 20 24 24 C 1.34947 * 107.92164 * 359.58781 * 22 21 20 25 25 H 1.08999 * 109.47618 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47397 * 300.00423 * 1 2 3 27 27 H 1.09007 * 109.46604 * 60.00069 * 1 2 3 28 28 H 1.08999 * 109.47449 * 239.99165 * 2 1 3 29 29 H 1.08998 * 109.47463 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47003 * 299.99944 * 3 2 1 31 31 H 1.09006 * 109.47032 * 59.99353 * 3 2 1 32 32 H 1.08997 * 109.47093 * 304.99607 * 4 2 1 33 33 H 1.09003 * 109.46723 * 184.99916 * 4 2 1 34 34 H 1.09003 * 109.46882 * 29.99706 * 6 5 4 35 35 H 1.08999 * 109.46900 * 149.99701 * 6 5 4 36 36 H 0.96997 * 119.99413 * 179.97438 * 10 9 7 37 37 H 1.08994 * 109.46963 * 59.99584 * 17 15 5 38 38 H 1.09004 * 109.46771 * 299.99960 * 17 15 5 39 39 H 1.09007 * 109.47384 * 60.00098 * 18 17 15 40 40 H 1.09002 * 109.46954 * 300.00115 * 18 17 15 41 41 H 1.08001 * 125.89534 * 0.02562 * 20 19 18 42 42 H 1.08006 * 126.12506 * 180.22115 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2494 5 7 1.6522 -2.1329 1.1907 6 6 0.3742 -2.5659 1.7613 7 6 0.5713 -2.9407 3.2075 8 1 1.5505 -2.8645 3.6566 9 6 -0.4987 -3.3811 3.9575 10 7 -1.6911 -3.4744 3.4104 11 14 -0.2544 -3.8464 5.7500 12 1 0.2509 -2.6700 6.5023 13 1 -1.5499 -4.2852 6.3285 14 1 0.7299 -4.9543 5.8442 15 6 2.4713 -3.0331 0.6117 16 8 2.1502 -4.2017 0.5627 17 6 3.7856 -2.5877 0.0242 18 6 4.5160 -3.7956 -0.5660 19 6 5.8300 -3.3500 -1.1540 20 6 6.0412 -2.9266 -2.4703 21 7 7.3055 -2.6169 -2.6021 22 7 7.9417 -2.8425 -1.3746 23 1 8.8820 -2.6992 -1.1843 24 6 7.0141 -3.2887 -0.5020 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8901 28 1 1.8933 -0.5139 -0.8899 29 1 3.1300 1.4424 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6053 -0.2618 2.1370 33 1 3.1262 -0.6444 1.2953 34 1 -0.3487 -1.7531 1.6919 35 1 0.0039 -3.4297 1.2092 36 1 -2.4437 -3.7845 3.9379 37 1 4.3987 -2.1377 0.8051 38 1 3.6025 -1.8547 -0.7615 39 1 3.9026 -4.2451 -1.3470 40 1 4.6990 -4.5289 0.2195 41 1 5.2894 -2.8619 -3.2430 42 1 7.1861 -3.5505 0.5317 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900402541.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:41:54 Heat of formation + Delta-G solvation = 17.349812 kcal Electronic energy + Delta-G solvation = -21995.372181 eV Core-core repulsion = 18783.487456 eV Total energy + Delta-G solvation = -3211.884725 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.23615 -39.14788 -36.34492 -33.92646 -33.33823 -32.23117 -31.37319 -29.34771 -27.53343 -26.78883 -25.43592 -24.23864 -22.23330 -21.91801 -20.19873 -19.93768 -18.17743 -17.80695 -16.48614 -16.04320 -15.56475 -14.99255 -14.65128 -14.51318 -14.47412 -14.06345 -13.81286 -13.22667 -13.05762 -12.68990 -12.34802 -12.31027 -12.02549 -11.88814 -11.77842 -11.45976 -11.24501 -11.05914 -10.89352 -10.87299 -10.64171 -10.54609 -10.33311 -10.20850 -10.07813 -9.74175 -9.55214 -8.87977 -8.45259 -8.37929 -7.54897 -6.00278 -4.04360 1.80107 2.71009 2.80664 3.33321 3.37970 3.40221 3.54810 4.05248 4.47975 4.73319 4.83859 5.05965 5.15318 5.22241 5.32991 5.36476 5.40190 5.47089 5.51861 5.72582 5.74116 5.86615 5.86752 5.94235 5.96771 6.14097 6.21950 6.23421 6.35112 6.38377 6.43216 6.61738 6.61865 6.73871 7.14768 7.17460 7.50917 7.54958 7.63638 7.96892 8.29915 8.52831 8.95529 9.19924 9.60396 11.07538 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.016320 B = 0.004566 C = 0.003890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.226520 B = 6131.080240 C = 7196.712356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.113 4.113 3 C -0.143 4.143 4 C 0.117 3.883 5 N -0.596 5.596 6 C 0.242 3.758 7 C -0.525 4.525 8 H 0.055 0.945 9 C 0.061 3.939 10 N -0.895 5.895 11 Si 0.896 3.104 12 H -0.278 1.278 13 H -0.287 1.287 14 H -0.277 1.277 15 C 0.503 3.497 16 O -0.544 6.544 17 C -0.133 4.133 18 C -0.027 4.027 19 C -0.226 4.226 20 C 0.056 3.944 21 N -0.302 5.302 22 N -0.482 5.482 23 H 0.437 0.563 24 C 0.056 3.944 25 H 0.069 0.931 26 H 0.055 0.945 27 H 0.044 0.956 28 H 0.066 0.934 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.039 0.961 35 H 0.041 0.959 36 H 0.263 0.737 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.183 0.817 42 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.342 7.053 -8.186 17.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.133 4.133 3 C -0.201 4.201 4 C -0.008 4.008 5 N -0.327 5.327 6 C 0.123 3.877 7 C -0.564 4.564 8 H 0.073 0.927 9 C -0.141 4.141 10 N -0.534 5.534 11 Si 0.724 3.276 12 H -0.203 1.203 13 H -0.212 1.212 14 H -0.202 1.202 15 C 0.290 3.710 16 O -0.422 6.422 17 C -0.173 4.173 18 C -0.066 4.066 19 C -0.238 4.238 20 C -0.131 4.131 21 N -0.124 5.124 22 N -0.190 5.190 23 H 0.280 0.720 24 C -0.091 4.091 25 H 0.088 0.912 26 H 0.074 0.926 27 H 0.063 0.937 28 H 0.085 0.915 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.098 0.902 33 H 0.083 0.917 34 H 0.057 0.943 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.200 0.800 42 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 14.831 6.796 -8.948 18.607 hybrid contribution -0.084 -0.337 1.814 1.847 sum 14.747 6.459 -7.135 17.609 Atomic orbital electron populations 1.21927 0.94682 1.03068 1.00878 1.21579 0.97026 0.95717 0.98988 1.21778 1.00495 0.96130 1.01700 1.21515 0.98993 0.82492 0.97788 1.48211 1.21804 1.06284 1.56409 1.19369 0.78899 0.96292 0.93134 1.21427 0.94933 1.44347 0.95663 0.92668 1.24919 0.95088 0.95503 0.98566 1.69922 0.99801 1.47084 1.36632 0.86598 0.77324 0.78913 0.84793 1.20339 1.21230 1.20249 1.20431 0.85690 0.86098 0.78821 1.90663 1.75322 1.17555 1.58704 1.21716 0.95106 0.99484 1.01016 1.19625 0.90301 0.96354 1.00309 1.20288 0.96330 1.12718 0.94446 1.23875 0.93781 0.98215 0.97221 1.77288 1.08253 1.24286 1.02609 1.46271 1.10871 1.53565 1.08331 0.71994 1.22456 0.89539 1.00217 0.96876 0.91238 0.92590 0.93707 0.91528 0.92986 0.92899 0.92570 0.90185 0.91742 0.94287 0.94142 0.92750 0.89928 0.89781 0.90466 0.90657 0.80050 0.80712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 8.18 37.15 0.30 -1.95 16 2 C -0.11 -1.55 3.12 -90.62 -0.28 -1.83 16 3 C -0.14 -1.56 9.19 37.16 0.34 -1.22 16 4 C 0.12 1.86 4.70 -4.04 -0.02 1.84 16 5 N -0.60 -12.23 2.28 -175.05 -0.40 -12.63 16 6 C 0.24 6.20 4.23 -5.19 -0.02 6.18 16 7 C -0.52 -14.76 9.39 -34.44 -0.32 -15.09 16 8 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 9 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 10 N -0.90 -26.49 13.29 55.43 0.74 -25.75 16 11 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 14 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 15 C 0.50 10.12 7.67 -10.99 -0.08 10.03 16 16 O -0.54 -13.40 15.56 5.55 0.09 -13.31 16 17 C -0.13 -1.89 4.23 -27.88 -0.12 -2.01 16 18 C -0.03 -0.36 4.99 -27.88 -0.14 -0.50 16 19 C -0.23 -2.62 5.35 -105.05 -0.56 -3.18 16 20 C 0.06 0.64 11.96 -17.36 -0.21 0.43 16 21 N -0.30 -3.62 12.70 30.63 0.39 -3.24 16 22 N -0.48 -4.51 7.36 30.45 0.22 -4.29 16 23 H 0.44 2.61 8.96 -182.61 -1.64 0.97 16 24 C 0.06 0.54 11.90 -17.22 -0.21 0.34 16 25 H 0.07 1.26 5.89 -51.93 -0.31 0.96 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.90 7.30 -51.93 -0.38 0.52 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 33 H 0.06 0.87 6.44 -51.93 -0.33 0.54 16 34 H 0.04 1.00 5.98 -51.93 -0.31 0.69 16 35 H 0.04 1.19 7.42 -51.93 -0.39 0.80 16 36 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 37 H 0.08 1.07 7.40 -51.93 -0.38 0.69 16 38 H 0.08 1.07 7.26 -51.93 -0.38 0.69 16 39 H 0.08 1.10 8.10 -51.93 -0.42 0.68 16 40 H 0.07 1.08 8.10 -51.93 -0.42 0.66 16 41 H 0.18 1.68 8.06 -52.49 -0.42 1.26 16 42 H 0.18 1.21 8.06 -52.48 -0.42 0.79 16 LS Contribution 346.31 15.07 5.22 5.22 Total: -1.00 -34.13 346.31 -8.06 -42.19 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -7.88 Total: 0.34 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: -1.42 Total: -5.33 kcal Atomic # 7 Polarization: -46.86 SS G_CDS: 0.95 Total: -45.91 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: 0.09 Total: -13.31 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.13 -8.06 -42.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900402541.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.542 kcal (2) G-P(sol) polarization free energy of solvation -34.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds