Wall clock time and date at job start Tue Mar 31 2020 01:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47138 * 2 1 4 4 C 1.52998 * 109.47202 * 119.99907 * 2 1 3 5 5 C 1.52998 * 109.47513 * 64.99967 * 4 2 1 6 6 N 1.46501 * 109.47332 * 180.02562 * 5 4 2 7 7 C 1.46497 * 119.99984 * 269.99854 * 6 5 4 8 8 C 1.50698 * 109.47207 * 270.00124 * 7 6 5 9 9 H 1.08001 * 120.00295 * 0.02562 * 8 7 6 10 10 C 1.37877 * 119.99796 * 179.97438 * 8 7 6 11 11 N 1.31513 * 120.00447 * 359.97438 * 10 8 7 12 12 Si 1.86809 * 119.99771 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47353 * 59.99979 * 12 10 8 14 14 H 1.48505 * 109.46863 * 180.02562 * 12 10 8 15 15 H 1.48505 * 109.46750 * 300.00005 * 12 10 8 16 16 C 1.34769 * 119.99854 * 90.00238 * 6 5 4 17 17 O 1.21285 * 120.00559 * 359.97438 * 16 6 5 18 18 C 1.50699 * 120.00037 * 180.02562 * 16 6 5 19 19 C 1.50704 * 109.47511 * 179.97438 * 18 16 6 20 20 C 1.34664 * 126.58651 * 275.03761 * 19 18 16 21 21 N 1.34134 * 108.01786 * 179.74146 * 20 19 18 22 22 C 1.30496 * 109.25675 * 0.37372 * 21 20 19 23 23 N 1.35047 * 108.70161 * 359.62603 * 22 21 20 24 24 H 0.96997 * 126.40535 * 180.25138 * 23 22 21 25 25 H 1.08999 * 109.47248 * 300.00000 * 1 2 3 26 26 H 1.08996 * 109.47314 * 60.00453 * 1 2 3 27 27 H 1.08999 * 109.47161 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47248 * 240.00000 * 2 1 3 29 29 H 1.09004 * 109.47642 * 180.02562 * 3 2 1 30 30 H 1.09009 * 109.46909 * 299.99737 * 3 2 1 31 31 H 1.08994 * 109.47642 * 59.99492 * 3 2 1 32 32 H 1.09009 * 109.46983 * 304.99933 * 4 2 1 33 33 H 1.09001 * 109.47620 * 185.00152 * 4 2 1 34 34 H 1.09000 * 109.46775 * 60.00019 * 5 4 2 35 35 H 1.09008 * 109.47039 * 300.00398 * 5 4 2 36 36 H 1.09003 * 109.47044 * 29.99822 * 7 6 5 37 37 H 1.09004 * 109.47069 * 150.00157 * 7 6 5 38 38 H 0.97001 * 120.00140 * 179.97438 * 11 10 8 39 39 H 1.08992 * 109.47512 * 59.99585 * 18 16 6 40 40 H 1.09004 * 109.47075 * 299.99537 * 18 16 6 41 41 H 1.07998 * 125.99171 * 359.92955 * 20 19 18 42 42 H 1.08002 * 125.65353 * 179.89694 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6353 -2.1954 1.1881 6 7 2.1231 -2.8859 2.3846 7 6 3.4514 -3.5039 2.3833 8 6 3.3409 -4.9311 1.9123 9 1 2.3777 -5.3371 1.6406 10 6 4.4696 -5.7182 1.8271 11 7 5.6428 -5.2235 2.1564 12 14 4.3328 -7.4872 1.2426 13 1 3.7734 -7.5123 -0.1328 14 1 5.6792 -8.1137 1.2414 15 1 3.4369 -8.2421 2.1552 16 6 1.3500 -2.9525 3.4864 17 8 0.2505 -2.4405 3.4877 18 6 1.8520 -3.6622 4.7174 19 6 0.8051 -3.5930 5.7993 20 6 0.6198 -2.5857 6.6736 21 7 -0.4142 -2.9082 7.4650 22 6 -0.8714 -4.0806 7.1193 23 7 -0.1405 -4.5417 6.0815 24 1 -0.2629 -5.3869 5.6217 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4426 -0.0005 30 1 1.6766 1.9563 -0.8901 31 1 1.6766 1.9564 0.8899 32 1 1.6053 -0.2616 2.1370 33 1 3.1263 -0.6443 1.2952 34 1 2.0699 -2.6549 0.3004 35 1 0.5489 -2.2724 1.1421 36 1 4.1091 -2.9501 1.7133 37 1 3.8618 -3.4852 3.3929 38 1 6.4369 -5.7774 2.0969 39 1 2.7664 -3.1823 5.0660 40 1 2.0580 -4.7052 4.4769 41 1 1.1997 -1.6762 6.7263 42 1 -1.7001 -4.5949 7.5832 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900567315.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:00 Heat of formation + Delta-G solvation = -20.179127 kcal Electronic energy + Delta-G solvation = -22102.961818 eV Core-core repulsion = 18889.449716 eV Total energy + Delta-G solvation = -3213.512102 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.93925 -40.70531 -37.83203 -36.37594 -34.47931 -33.74337 -32.80052 -30.66297 -28.90950 -28.02129 -27.73714 -24.97746 -24.30002 -22.44673 -21.86603 -20.89806 -20.13696 -18.73702 -18.52862 -17.94523 -17.01263 -16.42271 -16.25001 -16.01434 -15.58812 -15.20982 -14.81123 -14.64830 -14.36987 -14.35784 -14.17188 -13.85847 -13.76462 -13.40392 -13.18172 -13.00716 -12.82871 -12.72941 -12.54177 -12.24753 -12.05840 -11.95193 -11.58085 -11.53637 -11.41333 -11.00622 -10.94783 -10.76525 -10.55192 -9.43273 -9.29308 -8.20038 -6.35113 1.10811 1.42235 1.44305 1.51146 1.76130 2.15993 2.28378 2.38028 2.53828 3.10415 3.74924 3.81525 3.96422 3.99154 4.05203 4.08450 4.19901 4.37757 4.57194 4.58683 4.63419 4.69259 4.74669 4.77674 4.82076 4.93259 4.96804 5.02321 5.12215 5.15875 5.21401 5.30284 5.33382 5.46376 5.50543 5.66131 5.77953 5.86664 6.05844 6.55594 6.60586 6.81366 7.13184 7.30317 7.41878 8.84987 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.008133 B = 0.007641 C = 0.004312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3441.781186 B = 3663.560614 C = 6491.312923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.092 4.092 3 C -0.141 4.141 4 C -0.116 4.116 5 C 0.118 3.882 6 N -0.597 5.597 7 C 0.251 3.749 8 C -0.548 4.548 9 H 0.053 0.947 10 C 0.025 3.975 11 N -0.918 5.918 12 Si 0.953 3.047 13 H -0.275 1.275 14 H -0.284 1.284 15 H -0.269 1.269 16 C 0.515 3.485 17 O -0.587 6.587 18 C -0.055 4.055 19 C -0.002 4.002 20 C -0.037 4.037 21 N -0.534 5.534 22 C 0.191 3.809 23 N -0.558 5.558 24 H 0.431 0.569 25 H 0.045 0.955 26 H 0.070 0.930 27 H 0.046 0.954 28 H 0.075 0.925 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.050 0.950 32 H 0.048 0.952 33 H 0.057 0.943 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.021 0.979 37 H 0.035 0.965 38 H 0.268 0.732 39 H 0.120 0.880 40 H 0.107 0.893 41 H 0.166 0.834 42 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.394 3.578 0.652 8.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 C -0.199 4.199 4 C -0.155 4.155 5 C -0.004 4.004 6 N -0.327 5.327 7 C 0.130 3.870 8 C -0.586 4.586 9 H 0.071 0.929 10 C -0.176 4.176 11 N -0.556 5.556 12 Si 0.779 3.221 13 H -0.200 1.200 14 H -0.209 1.209 15 H -0.194 1.194 16 C 0.303 3.697 17 O -0.469 6.469 18 C -0.096 4.096 19 C -0.119 4.119 20 C -0.185 4.185 21 N -0.253 5.253 22 C -0.093 4.093 23 N -0.162 5.162 24 H 0.270 0.730 25 H 0.064 0.936 26 H 0.089 0.911 27 H 0.065 0.935 28 H 0.093 0.907 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.039 0.961 37 H 0.053 0.947 38 H 0.077 0.923 39 H 0.138 0.862 40 H 0.125 0.875 41 H 0.183 0.817 42 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -8.039 4.325 1.299 9.221 hybrid contribution 0.657 -1.846 -1.203 2.299 sum -7.382 2.480 0.096 7.788 Atomic orbital electron populations 1.21837 0.94988 1.01429 1.01814 1.21053 0.96106 0.96812 0.97091 1.21791 1.00988 0.94943 1.02139 1.21881 1.00533 0.94497 0.98596 1.21453 0.99339 0.92318 0.87330 1.48220 1.18555 1.53373 1.12519 1.19127 0.78376 0.91777 0.97719 1.21633 0.93779 0.97500 1.45726 0.92872 1.25604 0.94771 1.02163 0.95042 1.69993 0.99070 1.38275 1.48308 0.85683 0.77308 0.80139 0.78997 1.20025 1.20906 1.19395 1.20649 0.84322 0.79620 0.85079 1.90611 1.22152 1.49829 1.84283 1.19956 0.96542 1.03585 0.89496 1.20650 0.96873 0.93100 1.01297 1.22115 0.99482 1.00044 0.96814 1.70201 1.12280 1.14175 1.28678 1.25712 0.99972 0.93005 0.90583 1.43222 1.25741 1.18938 1.28306 0.72971 0.93557 0.91146 0.93533 0.90675 0.92644 0.91223 0.93054 0.93341 0.92400 0.90993 0.91419 0.96124 0.94701 0.92287 0.86242 0.87488 0.81663 0.73434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.50 8.95 71.98 0.64 -2.86 16 2 C -0.09 -2.31 2.92 -10.80 -0.03 -2.34 16 3 C -0.14 -3.02 9.19 71.98 0.66 -2.36 16 4 C -0.12 -3.67 5.01 30.59 0.15 -3.52 16 5 C 0.12 4.30 5.16 86.38 0.45 4.74 16 6 N -0.60 -24.18 2.46 -826.16 -2.03 -26.21 16 7 C 0.25 11.35 4.97 85.63 0.43 11.77 16 8 C -0.55 -26.93 9.28 25.60 0.24 -26.69 16 9 H 0.05 2.64 7.81 -2.91 -0.02 2.62 16 10 C 0.03 1.25 5.46 84.65 0.46 1.72 16 11 N -0.92 -48.51 13.29 21.45 0.28 -48.23 16 12 Si 0.95 39.80 29.54 68.60 2.03 41.83 16 13 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 14 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 15 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 16 C 0.51 20.63 7.67 87.66 0.67 21.30 16 17 O -0.59 -26.03 15.61 -3.04 -0.05 -26.08 16 18 C -0.06 -1.91 4.81 29.10 0.14 -1.77 16 19 C 0.00 -0.08 5.73 40.95 0.23 0.16 16 20 C -0.04 -1.29 11.79 83.52 0.98 -0.30 16 21 N -0.53 -17.64 11.25 -200.31 -2.25 -19.90 16 22 C 0.19 4.84 13.04 180.26 2.35 7.19 16 23 N -0.56 -14.87 6.15 -186.49 -1.15 -16.02 16 24 H 0.43 8.99 8.96 -92.71 -0.83 8.16 16 25 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.05 1.23 6.56 -2.39 -0.02 1.21 16 28 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 30 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 31 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 33 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.07 2.62 8.07 -2.39 -0.02 2.61 16 35 H 0.07 2.52 5.84 -2.38 -0.01 2.51 16 36 H 0.02 1.00 8.07 -2.39 -0.02 0.98 16 37 H 0.04 1.60 6.44 -2.39 -0.02 1.59 16 38 H 0.27 13.53 8.31 -92.71 -0.77 12.76 16 39 H 0.12 3.93 7.40 -2.39 -0.02 3.91 16 40 H 0.11 3.76 8.00 -2.38 -0.02 3.74 16 41 H 0.17 5.32 8.06 -2.91 -0.02 5.30 16 42 H 0.25 3.55 8.06 -2.91 -0.02 3.53 16 Total: -1.00 -63.55 350.33 4.39 -59.16 By element: Atomic # 1 Polarization: 28.24 SS G_CDS: 0.17 Total: 28.41 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: 7.38 Total: 7.04 kcal Atomic # 7 Polarization: -105.21 SS G_CDS: -5.14 Total: -110.36 kcal Atomic # 8 Polarization: -26.03 SS G_CDS: -0.05 Total: -26.08 kcal Atomic # 14 Polarization: 39.80 SS G_CDS: 2.03 Total: 41.83 kcal Total: -63.55 4.39 -59.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900567315.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.978 kcal (2) G-P(sol) polarization free energy of solvation -63.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds