Wall clock time and date at job start Tue Mar 31 2020 02:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47139 * 2 1 4 4 C 1.50701 * 109.46997 * 240.00208 * 2 1 3 5 5 H 1.08008 * 119.99626 * 241.35920 * 4 2 1 6 6 C 1.37878 * 120.00334 * 61.36153 * 4 2 1 7 7 N 1.31511 * 120.00113 * 193.96470 * 6 4 2 8 8 Si 1.86797 * 119.99693 * 13.96040 * 6 4 2 9 9 H 1.48500 * 109.47206 * 84.55911 * 8 6 4 10 10 H 1.48503 * 109.47014 * 204.55494 * 8 6 4 11 11 H 1.48495 * 109.47390 * 324.55979 * 8 6 4 12 12 C 1.53005 * 109.47197 * 120.00237 * 2 1 3 13 13 N 1.46899 * 109.46800 * 299.99891 * 12 2 1 14 14 C 1.46896 * 110.99845 * 180.02562 * 13 12 2 15 15 C 1.50704 * 109.47277 * 179.97438 * 14 13 12 16 16 C 1.34970 * 126.68198 * 95.02024 * 15 14 13 17 17 N 1.34394 * 108.10061 * 179.97438 * 16 15 14 18 18 C 1.29778 * 109.18421 * 359.96623 * 17 16 15 19 19 N 1.35737 * 108.61070 * 359.81716 * 18 17 16 20 20 C 1.46537 * 123.52926 * 179.47589 * 19 18 17 21 21 C 1.53475 * 108.17136 * 344.26073 * 20 19 18 22 22 O 1.43030 * 109.67212 * 48.05067 * 21 20 19 23 23 C 1.43451 * 114.06618 * 289.88119 * 22 21 20 24 24 H 1.09000 * 109.47110 * 309.31592 * 1 2 3 25 25 H 1.09004 * 109.47241 * 69.31288 * 1 2 3 26 26 H 1.09000 * 109.47326 * 189.31526 * 1 2 3 27 27 H 1.09004 * 109.46911 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.46859 * 299.99690 * 3 2 1 29 29 H 1.08994 * 109.46880 * 60.00429 * 3 2 1 30 30 H 0.96997 * 119.99989 * 180.02562 * 7 6 4 31 31 H 1.08992 * 109.46899 * 59.99798 * 12 2 1 32 32 H 1.08997 * 109.47025 * 179.97438 * 12 2 1 33 33 H 1.00905 * 111.00292 * 303.95183 * 13 12 2 34 34 H 1.09004 * 109.47005 * 299.99760 * 14 13 12 35 35 H 1.09003 * 109.47630 * 59.99889 * 14 13 12 36 36 H 1.08001 * 125.94815 * 359.97438 * 16 15 14 37 37 H 1.08996 * 109.89834 * 224.47584 * 20 19 18 38 38 H 1.09003 * 109.54657 * 103.83913 * 20 19 18 39 39 H 1.08993 * 109.43473 * 287.98820 * 21 20 19 40 40 H 1.08996 * 109.40111 * 168.09198 * 21 20 19 41 41 H 1.09000 * 109.79543 * 290.04868 * 23 22 21 42 42 H 1.09003 * 109.84752 * 169.22164 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6350 -1.6012 -1.1315 6 6 1.7225 -0.2232 -2.4826 7 7 1.9161 -0.9722 -3.5461 8 14 1.0277 1.5008 -2.6683 9 1 2.1418 2.4819 -2.7081 10 1 0.2473 1.5868 -3.9288 11 1 0.1419 1.8044 -1.5158 12 6 2.0400 -0.7213 1.2492 13 7 1.5503 -0.0288 2.4487 14 6 2.0218 -0.6946 3.6702 15 6 1.5012 0.0427 4.8771 16 6 0.3861 -0.2473 5.5801 17 7 0.2774 0.6464 6.5779 18 6 1.2762 1.4730 6.5208 19 7 2.0665 1.1258 5.4733 20 6 3.2843 1.8517 5.1027 21 6 3.2627 3.2145 5.8081 22 8 2.9410 3.0362 7.1903 23 6 1.5828 2.6407 7.4285 24 1 -0.3633 0.6511 0.7951 25 1 -0.3634 0.3630 -0.9614 26 1 -0.3634 -1.0141 0.1663 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6986 -0.6293 -4.4269 31 1 1.6766 -1.7489 1.2492 32 1 3.1300 -0.7217 1.2490 33 1 1.8198 0.9436 2.4402 34 1 1.6587 -1.7222 3.6873 35 1 3.1117 -0.6941 3.6869 36 1 -0.2994 -1.0565 5.3762 37 1 3.3157 1.9966 4.0228 38 1 4.1585 1.2850 5.4235 39 1 2.5131 3.8529 5.3406 40 1 4.2431 3.6827 5.7213 41 1 0.9120 3.4697 7.2029 42 1 1.4618 2.3409 8.4695 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000922179759.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:40:56 Heat of formation + Delta-G solvation = 15.189746 kcal Electronic energy + Delta-G solvation = -22365.749698 eV Core-core repulsion = 19153.771306 eV Total energy + Delta-G solvation = -3211.978392 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.43827 -39.32536 -38.95885 -36.02755 -34.97260 -33.69867 -31.60505 -30.81620 -28.25271 -27.97422 -27.08073 -26.12340 -24.82719 -24.27865 -21.97240 -20.65597 -20.25131 -18.54217 -18.06540 -17.54198 -17.45085 -16.70492 -16.43481 -16.26234 -16.00837 -15.50408 -15.17104 -15.03282 -14.77870 -14.44540 -14.30527 -14.04666 -13.82684 -13.70758 -13.58504 -13.17625 -12.83971 -12.60598 -12.31432 -12.23759 -11.96542 -11.89352 -11.62217 -11.27082 -10.99347 -10.97413 -10.59341 -10.57701 -10.35411 -9.43995 -9.18851 -8.29399 -6.28505 0.89414 1.33709 1.38813 1.48750 1.60555 2.01346 2.35298 2.66261 3.07586 3.14940 3.31921 3.45846 3.70090 3.92662 3.97760 4.07609 4.23552 4.29146 4.34850 4.44695 4.47153 4.52175 4.58136 4.63283 4.65065 4.77443 4.85362 4.87608 5.02212 5.08928 5.13415 5.28759 5.30340 5.59212 5.66037 5.73423 5.81415 5.84862 6.04350 6.14451 6.32089 6.46463 6.77959 7.00315 7.37066 8.87715 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.028382 B = 0.004043 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.314885 B = 6923.610143 C = 7299.544105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.035 3.965 3 C -0.146 4.146 4 C -0.512 4.512 5 H 0.032 0.968 6 C 0.018 3.982 7 N -0.947 5.947 8 Si 0.941 3.059 9 H -0.281 1.281 10 H -0.317 1.317 11 H -0.216 1.216 12 C 0.098 3.902 13 N -0.680 5.680 14 C 0.140 3.860 15 C -0.004 4.004 16 C -0.035 4.035 17 N -0.508 5.508 18 C 0.153 3.847 19 N -0.454 5.454 20 C 0.060 3.940 21 C 0.048 3.952 22 O -0.382 6.382 23 C 0.153 3.847 24 H 0.053 0.947 25 H 0.029 0.971 26 H 0.035 0.965 27 H 0.050 0.950 28 H 0.028 0.972 29 H 0.065 0.935 30 H 0.263 0.737 31 H 0.057 0.943 32 H 0.022 0.978 33 H 0.338 0.662 34 H 0.099 0.901 35 H 0.044 0.956 36 H 0.177 0.823 37 H 0.108 0.892 38 H 0.100 0.900 39 H 0.073 0.927 40 H 0.149 0.851 41 H 0.100 0.900 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.775 10.261 21.309 23.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.034 3.966 3 C -0.203 4.203 4 C -0.550 4.550 5 H 0.050 0.950 6 C -0.179 4.179 7 N -0.587 5.587 8 Si 0.771 3.229 9 H -0.208 1.208 10 H -0.247 1.247 11 H -0.140 1.140 12 C -0.030 4.030 13 N -0.313 5.313 14 C 0.010 3.990 15 C -0.119 4.119 16 C -0.183 4.183 17 N -0.228 5.228 18 C -0.110 4.110 19 N -0.138 5.138 20 C -0.061 4.061 21 C -0.028 4.028 22 O -0.299 6.299 23 C 0.075 3.925 24 H 0.072 0.928 25 H 0.048 0.952 26 H 0.054 0.946 27 H 0.069 0.931 28 H 0.047 0.953 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.040 0.960 33 H 0.157 0.843 34 H 0.117 0.883 35 H 0.062 0.938 36 H 0.194 0.806 37 H 0.126 0.874 38 H 0.118 0.882 39 H 0.092 0.908 40 H 0.166 0.834 41 H 0.118 0.882 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.846 10.022 21.812 24.075 hybrid contribution 1.139 0.156 -1.834 2.164 sum 2.985 10.178 19.978 22.619 Atomic orbital electron populations 1.21990 0.96877 0.99975 0.99117 1.18476 0.93253 0.92563 0.92329 1.22272 1.00646 0.97669 0.99682 1.21191 1.32263 1.10910 0.90653 0.94966 1.25781 0.95494 1.01137 0.95529 1.70106 1.51202 1.38110 0.99315 0.86388 0.79287 0.80786 0.76408 1.20825 1.24727 1.14045 1.21665 0.95817 0.97369 0.88186 1.60558 1.63907 1.06222 1.00588 1.20249 0.96947 0.97521 0.84245 1.21070 0.97840 0.93367 0.99656 1.22438 0.98624 1.02185 0.95079 1.69838 1.23000 1.06089 1.23873 1.24493 0.90599 1.01955 0.93929 1.45317 1.21477 1.23428 1.23578 1.22998 0.85269 0.94921 1.02935 1.23188 1.05362 0.93278 0.80991 1.88135 1.28133 1.88300 1.25323 1.21395 0.83435 0.89586 0.98088 0.92775 0.95186 0.94593 0.93117 0.95349 0.91622 0.92858 0.92410 0.95983 0.84325 0.88314 0.93839 0.80562 0.87363 0.88158 0.90824 0.83369 0.88248 0.84683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.08 7.55 71.98 0.54 -4.54 16 2 C 0.03 1.48 0.57 -52.93 -0.03 1.45 16 3 C -0.15 -5.48 7.37 71.98 0.53 -4.95 16 4 C -0.51 -27.82 8.62 25.60 0.22 -27.60 16 5 H 0.03 1.95 7.99 -2.91 -0.02 1.92 16 6 C 0.02 1.01 5.32 84.66 0.45 1.46 16 7 N -0.95 -58.76 13.96 21.45 0.30 -58.46 16 8 Si 0.94 44.04 22.79 68.60 1.56 45.61 16 9 H -0.28 -12.69 7.10 99.48 0.71 -11.98 16 10 H -0.32 -15.37 7.11 99.48 0.71 -14.66 16 11 H -0.22 -9.04 4.65 99.48 0.46 -8.58 16 12 C 0.10 3.50 4.57 86.31 0.39 3.89 16 13 N -0.68 -19.55 5.89 -517.93 -3.05 -22.60 16 14 C 0.14 3.42 6.04 85.56 0.52 3.94 16 15 C 0.00 -0.09 6.51 41.17 0.27 0.18 16 16 C -0.04 -0.98 11.81 83.55 0.99 0.01 16 17 N -0.51 -14.57 11.24 -187.31 -2.10 -16.67 16 18 C 0.15 3.62 7.79 138.22 1.08 4.69 16 19 N -0.45 -10.02 3.14 -499.02 -1.57 -11.58 16 20 C 0.06 0.88 7.14 86.53 0.62 1.49 16 21 C 0.05 0.53 6.82 72.14 0.49 1.02 16 22 O -0.38 -5.86 10.78 -148.98 -1.61 -7.47 16 23 C 0.15 2.42 7.29 71.34 0.52 2.94 16 24 H 0.05 2.00 7.88 -2.39 -0.02 1.98 16 25 H 0.03 1.31 4.30 -2.39 -0.01 1.30 16 26 H 0.03 1.50 8.12 -2.39 -0.02 1.48 16 27 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.03 1.14 2.25 -2.39 -0.01 1.14 16 29 H 0.07 2.01 6.57 -2.39 -0.02 2.00 16 30 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 31 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.34 9.07 6.76 -89.69 -0.61 8.47 16 34 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 35 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.18 4.46 8.06 -2.91 -0.02 4.44 16 37 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.07 0.75 8.09 -2.39 -0.02 0.73 16 40 H 0.15 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.14 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -70.18 323.82 0.29 -69.89 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: 0.17 Total: 17.30 kcal Atomic # 6 Polarization: -22.61 SS G_CDS: 6.59 Total: -16.02 kcal Atomic # 7 Polarization: -102.89 SS G_CDS: -6.42 Total: -109.32 kcal Atomic # 8 Polarization: -5.86 SS G_CDS: -1.61 Total: -7.47 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 1.56 Total: 45.61 kcal Total: -70.18 0.29 -69.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922179759.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.082 kcal (2) G-P(sol) polarization free energy of solvation -70.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds