Wall clock time and date at job start Tue Mar 31 2020 03:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47054 * 2 1 4 4 H 1.09001 * 109.47419 * 305.66089 * 3 2 1 5 5 C 1.50702 * 109.47222 * 185.66268 * 3 2 1 6 6 H 1.08002 * 119.99807 * 275.01046 * 5 3 2 7 7 C 1.37873 * 120.00288 * 95.00092 * 5 3 2 8 8 N 1.31515 * 120.00322 * 184.83102 * 7 5 3 9 9 Si 1.86803 * 119.99840 * 4.83779 * 7 5 3 10 10 H 1.48502 * 109.47208 * 84.85499 * 9 7 5 11 11 H 1.48501 * 109.47118 * 204.85596 * 9 7 5 12 12 H 1.48503 * 109.47022 * 324.85596 * 9 7 5 13 13 N 1.46498 * 109.47181 * 65.66509 * 3 2 1 14 14 C 1.38399 * 120.00179 * 274.99811 * 13 3 2 15 15 N 1.32503 * 119.18270 * 359.72669 * 14 13 3 16 16 C 1.32427 * 120.88093 * 179.76069 * 15 14 13 17 17 C 1.38240 * 119.27130 * 0.50200 * 16 15 14 18 18 C 1.39402 * 118.50461 * 359.75562 * 17 16 15 19 19 O 1.35510 * 120.46344 * 180.02562 * 18 17 16 20 20 C 1.42901 * 116.99815 * 179.97438 * 19 18 17 21 21 C 1.52999 * 109.47069 * 60.00600 * 20 19 18 22 22 C 1.53001 * 109.47052 * 180.02562 * 20 19 18 23 23 C 1.52998 * 109.47238 * 300.00114 * 20 19 18 24 24 N 1.32455 * 119.19035 * 179.97438 * 14 13 3 25 25 H 1.09001 * 109.46818 * 59.99751 * 1 2 3 26 26 H 1.09000 * 109.47219 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47281 * 300.00120 * 1 2 3 28 28 H 1.09001 * 109.46887 * 239.99972 * 2 1 3 29 29 H 1.09001 * 109.46818 * 120.00249 * 2 1 3 30 30 H 0.97004 * 120.00094 * 180.02562 * 8 7 5 31 31 H 0.97006 * 120.00415 * 94.99277 * 13 3 2 32 32 H 1.08004 * 120.36410 * 180.25973 * 16 15 14 33 33 H 1.08003 * 120.74987 * 179.77217 * 17 16 15 34 34 H 1.08996 * 109.47168 * 59.99988 * 21 20 19 35 35 H 1.09004 * 109.46889 * 180.02562 * 21 20 19 36 36 H 1.09004 * 109.46648 * 299.99759 * 21 20 19 37 37 H 1.09003 * 109.47519 * 59.99693 * 22 20 19 38 38 H 1.09001 * 109.47220 * 180.02562 * 22 20 19 39 39 H 1.09006 * 109.47195 * 299.99966 * 22 20 19 40 40 H 1.08998 * 109.47235 * 60.00272 * 23 20 19 41 41 H 1.09001 * 109.46900 * 179.97438 * 23 20 19 42 42 H 1.09000 * 109.47577 * 300.00160 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5963 1.9848 -0.8350 5 6 3.5405 1.4448 -0.1402 6 1 4.1647 1.3334 0.7341 7 6 4.1164 1.5890 -1.3845 8 7 5.4213 1.4961 -1.5200 9 14 3.0433 1.9166 -2.8781 10 1 2.7769 3.3736 -2.9863 11 1 3.7423 1.4490 -4.1020 12 1 1.7576 1.1878 -2.7333 13 7 1.6662 2.0926 1.2585 14 6 0.4176 2.6743 1.3927 15 7 -0.4251 2.6385 0.3707 16 6 -1.6298 3.1803 0.4638 17 6 -2.0035 3.7990 1.6422 18 6 -1.0932 3.8249 2.6977 19 8 -1.4182 4.4203 3.8708 20 6 -0.4298 4.4032 4.9027 21 6 0.8306 5.1196 4.4135 22 6 -0.9739 5.1166 6.1420 23 6 -0.0879 2.9548 5.2576 24 7 0.0962 3.2573 2.5378 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 5.8265 1.5979 -2.3955 31 1 2.2937 2.1153 1.9978 32 1 -2.3115 3.1427 -0.3730 33 1 -2.9788 4.2518 1.7431 34 1 0.5870 6.1515 4.1607 35 1 1.5847 5.1062 5.2005 36 1 1.2180 4.6110 3.5307 37 1 -1.8717 4.6060 6.4904 38 1 -0.2198 5.1040 6.9289 39 1 -1.2178 6.1486 5.8894 40 1 0.2997 2.4462 4.3749 41 1 0.6664 2.9418 6.0443 42 1 -0.9857 2.4444 5.6061 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161053044.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:26:43 Heat of formation + Delta-G solvation = 19.510434 kcal Electronic energy + Delta-G solvation = -22828.456447 eV Core-core repulsion = 19616.665414 eV Total energy + Delta-G solvation = -3211.791033 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.92819 -39.00052 -36.32920 -34.10541 -33.12999 -32.40594 -31.36166 -29.67826 -27.45684 -27.25780 -27.16766 -24.12110 -23.10762 -22.39299 -20.83130 -19.55524 -18.27056 -17.18667 -16.79571 -15.65983 -15.44118 -15.35610 -15.01457 -14.66959 -14.44161 -13.88854 -13.73733 -13.41149 -13.04013 -12.79470 -12.54421 -12.47556 -12.07158 -11.95269 -11.92485 -11.86347 -11.67358 -11.01552 -10.88769 -10.86442 -10.79969 -10.64848 -10.25594 -10.02511 -9.89519 -9.76084 -9.23433 -9.02871 -8.69281 -8.53903 -7.28341 -6.25573 -4.29619 1.65482 1.77821 3.06025 3.24443 3.32678 3.38653 3.65110 4.30234 4.38008 4.59162 4.83552 4.85384 5.00179 5.07859 5.19302 5.43290 5.47237 5.57174 5.67691 5.73063 5.74559 5.79099 5.94903 5.96816 6.02514 6.05093 6.06688 6.21399 6.44753 6.48470 6.54811 6.64021 6.76746 6.97350 7.00947 7.25480 7.34714 7.43183 7.51678 7.86361 8.07628 8.48460 8.74961 8.98129 9.35889 10.86084 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.022640 B = 0.005184 C = 0.004792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.477053 B = 5399.579136 C = 5842.084054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.125 4.125 3 C 0.249 3.751 4 H 0.058 0.942 5 C -0.532 4.532 6 H 0.078 0.922 7 C 0.083 3.917 8 N -0.887 5.887 9 Si 0.874 3.126 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.256 1.256 13 N -0.663 5.663 14 C 0.594 3.406 15 N -0.579 5.579 16 C 0.212 3.788 17 C -0.334 4.334 18 C 0.405 3.595 19 O -0.300 6.300 20 C 0.119 3.881 21 C -0.183 4.183 22 C -0.139 4.139 23 C -0.182 4.182 24 N -0.626 5.626 25 H 0.056 0.944 26 H 0.027 0.973 27 H 0.042 0.958 28 H 0.062 0.938 29 H 0.049 0.951 30 H 0.268 0.732 31 H 0.405 0.595 32 H 0.163 0.837 33 H 0.136 0.864 34 H 0.052 0.948 35 H 0.063 0.937 36 H 0.097 0.903 37 H 0.062 0.938 38 H 0.076 0.924 39 H 0.063 0.937 40 H 0.096 0.904 41 H 0.063 0.937 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.574 4.575 9.763 17.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.164 4.164 3 C 0.146 3.854 4 H 0.075 0.925 5 C -0.570 4.570 6 H 0.096 0.904 7 C -0.122 4.122 8 N -0.524 5.524 9 Si 0.701 3.299 10 H -0.199 1.199 11 H -0.213 1.213 12 H -0.180 1.180 13 N -0.293 5.293 14 C 0.238 3.762 15 N -0.306 5.306 16 C 0.044 3.956 17 C -0.362 4.362 18 C 0.217 3.783 19 O -0.206 6.206 20 C 0.082 3.918 21 C -0.240 4.240 22 C -0.196 4.196 23 C -0.239 4.239 24 N -0.367 5.367 25 H 0.075 0.925 26 H 0.046 0.954 27 H 0.061 0.939 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.242 0.758 32 H 0.181 0.819 33 H 0.154 0.846 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.116 0.884 37 H 0.081 0.919 38 H 0.095 0.905 39 H 0.082 0.918 40 H 0.115 0.885 41 H 0.082 0.918 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.619 4.193 9.464 16.322 hybrid contribution -0.827 0.594 -0.258 1.051 sum -13.447 4.787 9.206 16.985 Atomic orbital electron populations 1.21876 0.97490 0.98493 1.01721 1.22078 0.93713 0.99466 1.01159 1.19229 0.95265 0.88943 0.81969 0.92466 1.21015 0.88713 1.51739 0.95505 0.90409 1.24930 0.94878 0.93598 0.98811 1.69884 1.09803 1.48110 1.24554 0.86885 0.81357 0.79584 0.82095 1.19944 1.21301 1.18030 1.45412 1.09582 1.55757 1.18567 1.19359 0.87869 0.85645 0.83362 1.68236 1.04844 1.26633 1.30865 1.22653 0.91340 0.86566 0.95004 1.21330 1.03122 1.16550 0.95162 1.19626 0.88051 0.85351 0.85302 1.86258 1.42647 1.71518 1.20127 1.21700 0.87744 0.96581 0.85785 1.22569 0.96887 1.00338 1.04228 1.21838 1.01783 1.00676 0.95339 1.22563 1.01663 0.95626 1.04091 1.67695 1.20008 1.22758 1.26275 0.92505 0.95374 0.93903 0.91973 0.93222 0.92202 0.75798 0.81944 0.84584 0.92903 0.91754 0.88438 0.91858 0.90546 0.91832 0.88527 0.91776 0.92961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 8.45 37.16 0.31 -2.27 16 2 C -0.12 -2.62 5.59 -26.73 -0.15 -2.77 16 3 C 0.25 5.67 1.89 -69.09 -0.13 5.54 16 4 H 0.06 1.39 4.65 -51.93 -0.24 1.15 16 5 C -0.53 -14.06 9.05 -34.44 -0.31 -14.37 16 6 H 0.08 2.21 8.06 -52.49 -0.42 1.78 16 7 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 8 N -0.89 -25.87 13.96 55.43 0.77 -25.10 16 9 Si 0.87 20.92 26.99 -169.99 -4.59 16.33 16 10 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.26 -5.89 6.82 56.52 0.39 -5.51 16 13 N -0.66 -13.57 5.16 -56.94 -0.29 -13.86 16 14 C 0.59 11.39 7.01 -322.86 -2.26 9.12 16 15 N -0.58 -10.73 6.39 -14.00 -0.09 -10.82 16 16 C 0.21 3.16 11.29 -17.29 -0.20 2.97 16 17 C -0.33 -4.82 10.12 -39.15 -0.40 -5.21 16 18 C 0.41 6.50 6.79 -16.72 -0.11 6.39 16 19 O -0.30 -4.41 9.79 -18.22 -0.18 -4.58 16 20 C 0.12 1.51 1.11 -90.62 -0.10 1.41 16 21 C -0.18 -2.40 8.35 37.16 0.31 -2.09 16 22 C -0.14 -1.35 8.84 37.16 0.33 -1.02 16 23 C -0.18 -2.31 8.35 37.16 0.31 -2.00 16 24 N -0.63 -10.85 4.81 -13.99 -0.07 -10.92 16 25 H 0.06 1.08 7.70 -51.93 -0.40 0.68 16 26 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.04 0.81 5.58 -51.93 -0.29 0.52 16 28 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 29 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 31 H 0.41 7.97 8.71 -40.82 -0.36 7.62 16 32 H 0.16 1.81 8.06 -52.48 -0.42 1.39 16 33 H 0.14 1.62 8.06 -52.48 -0.42 1.20 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.10 1.54 5.60 -51.93 -0.29 1.25 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.10 1.47 5.60 -51.93 -0.29 1.18 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 332.16 15.07 5.01 5.01 Total: -1.00 -28.83 332.16 -8.45 -37.28 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -6.52 Total: 8.81 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -2.50 Total: -2.15 kcal Atomic # 7 Polarization: -61.02 SS G_CDS: 0.32 Total: -60.69 kcal Atomic # 8 Polarization: -4.41 SS G_CDS: -0.18 Total: -4.58 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.59 Total: 16.33 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.83 -8.45 -37.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161053044.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.788 kcal (2) G-P(sol) polarization free energy of solvation -28.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds