Wall clock time and date at job start Tue Mar 31 2020 03:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47054 * 2 1 4 4 H 1.09001 * 109.47419 * 305.66089 * 3 2 1 5 5 C 1.50702 * 109.47222 * 185.66268 * 3 2 1 6 6 H 1.08002 * 119.99807 * 275.01046 * 5 3 2 7 7 C 1.37873 * 120.00288 * 95.00092 * 5 3 2 8 8 N 1.31515 * 120.00322 * 184.83102 * 7 5 3 9 9 Si 1.86803 * 119.99840 * 4.83779 * 7 5 3 10 10 H 1.48502 * 109.47208 * 84.85499 * 9 7 5 11 11 H 1.48501 * 109.47118 * 204.85596 * 9 7 5 12 12 H 1.48503 * 109.47022 * 324.85596 * 9 7 5 13 13 N 1.46498 * 109.47181 * 65.66509 * 3 2 1 14 14 C 1.38399 * 120.00179 * 274.99811 * 13 3 2 15 15 N 1.32503 * 119.18270 * 359.72669 * 14 13 3 16 16 C 1.32427 * 120.88093 * 179.76069 * 15 14 13 17 17 C 1.38240 * 119.27130 * 0.50200 * 16 15 14 18 18 C 1.39402 * 118.50461 * 359.75562 * 17 16 15 19 19 O 1.35510 * 120.46344 * 180.02562 * 18 17 16 20 20 C 1.42901 * 116.99815 * 179.97438 * 19 18 17 21 21 C 1.52999 * 109.47069 * 60.00600 * 20 19 18 22 22 C 1.53001 * 109.47052 * 180.02562 * 20 19 18 23 23 C 1.52998 * 109.47238 * 300.00114 * 20 19 18 24 24 N 1.32455 * 119.19035 * 179.97438 * 14 13 3 25 25 H 1.09001 * 109.46818 * 59.99751 * 1 2 3 26 26 H 1.09000 * 109.47219 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47281 * 300.00120 * 1 2 3 28 28 H 1.09001 * 109.46887 * 239.99972 * 2 1 3 29 29 H 1.09001 * 109.46818 * 120.00249 * 2 1 3 30 30 H 0.97004 * 120.00094 * 180.02562 * 8 7 5 31 31 H 0.97006 * 120.00415 * 94.99277 * 13 3 2 32 32 H 1.08004 * 120.36410 * 180.25973 * 16 15 14 33 33 H 1.08003 * 120.74987 * 179.77217 * 17 16 15 34 34 H 1.08996 * 109.47168 * 59.99988 * 21 20 19 35 35 H 1.09004 * 109.46889 * 180.02562 * 21 20 19 36 36 H 1.09004 * 109.46648 * 299.99759 * 21 20 19 37 37 H 1.09003 * 109.47519 * 59.99693 * 22 20 19 38 38 H 1.09001 * 109.47220 * 180.02562 * 22 20 19 39 39 H 1.09006 * 109.47195 * 299.99966 * 22 20 19 40 40 H 1.08998 * 109.47235 * 60.00272 * 23 20 19 41 41 H 1.09001 * 109.46900 * 179.97438 * 23 20 19 42 42 H 1.09000 * 109.47577 * 300.00160 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5963 1.9848 -0.8350 5 6 3.5405 1.4448 -0.1402 6 1 4.1647 1.3334 0.7341 7 6 4.1164 1.5890 -1.3845 8 7 5.4213 1.4961 -1.5200 9 14 3.0433 1.9166 -2.8781 10 1 2.7769 3.3736 -2.9863 11 1 3.7423 1.4490 -4.1020 12 1 1.7576 1.1878 -2.7333 13 7 1.6662 2.0926 1.2585 14 6 0.4176 2.6743 1.3927 15 7 -0.4251 2.6385 0.3707 16 6 -1.6298 3.1803 0.4638 17 6 -2.0035 3.7990 1.6422 18 6 -1.0932 3.8249 2.6977 19 8 -1.4182 4.4203 3.8708 20 6 -0.4298 4.4032 4.9027 21 6 0.8306 5.1196 4.4135 22 6 -0.9739 5.1166 6.1420 23 6 -0.0879 2.9548 5.2576 24 7 0.0962 3.2573 2.5378 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 5.8265 1.5979 -2.3955 31 1 2.2937 2.1153 1.9978 32 1 -2.3115 3.1427 -0.3730 33 1 -2.9788 4.2518 1.7431 34 1 0.5870 6.1515 4.1607 35 1 1.5847 5.1062 5.2005 36 1 1.2180 4.6110 3.5307 37 1 -1.8717 4.6060 6.4904 38 1 -0.2198 5.1040 6.9289 39 1 -1.2178 6.1486 5.8894 40 1 0.2997 2.4462 4.3749 41 1 0.6664 2.9418 6.0443 42 1 -0.9857 2.4444 5.6061 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161053044.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:26:43 Heat of formation + Delta-G solvation = 3.665024 kcal Electronic energy + Delta-G solvation = -22829.143555 eV Core-core repulsion = 19616.665414 eV Total energy + Delta-G solvation = -3212.478142 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.17091 -40.19124 -37.91851 -35.22571 -34.63546 -34.16579 -32.85004 -31.07851 -29.02238 -28.29015 -28.25861 -25.33419 -24.82688 -23.83042 -22.10314 -21.06190 -19.86889 -18.49987 -18.37189 -17.05095 -16.81454 -16.74533 -16.34870 -15.89964 -15.75405 -15.46986 -14.92125 -14.73966 -14.68538 -14.12630 -13.76531 -13.68746 -13.59869 -13.39344 -13.02822 -12.94693 -12.85370 -12.68498 -12.56566 -12.35569 -11.87884 -11.85513 -11.81756 -11.62192 -11.46253 -11.20605 -11.12668 -10.78116 -10.28952 -9.84494 -8.73041 -8.36688 -6.44037 0.43483 0.48967 1.34955 1.37874 1.49701 1.92900 2.23803 2.31140 3.02598 3.10076 3.39271 3.86186 3.88400 4.02818 4.04379 4.13075 4.40004 4.47727 4.54132 4.59777 4.66289 4.67404 4.68131 4.81605 4.87369 4.90976 4.92752 4.95304 5.17692 5.18844 5.27742 5.33254 5.38634 5.40789 5.44104 5.54025 5.62885 5.98407 6.10606 6.34623 6.40262 6.62334 6.85963 7.23182 7.59530 8.78748 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.022640 B = 0.005184 C = 0.004792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.477053 B = 5399.579136 C = 5842.084054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.123 4.123 3 C 0.262 3.738 4 H 0.048 0.952 5 C -0.532 4.532 6 H 0.043 0.957 7 C 0.030 3.970 8 N -0.935 5.935 9 Si 0.934 3.066 10 H -0.275 1.275 11 H -0.282 1.282 12 H -0.239 1.239 13 N -0.677 5.677 14 C 0.582 3.418 15 N -0.602 5.602 16 C 0.208 3.792 17 C -0.319 4.319 18 C 0.387 3.613 19 O -0.301 6.301 20 C 0.112 3.888 21 C -0.180 4.180 22 C -0.133 4.133 23 C -0.178 4.178 24 N -0.626 5.626 25 H 0.056 0.944 26 H 0.048 0.952 27 H 0.038 0.962 28 H 0.053 0.947 29 H 0.046 0.954 30 H 0.270 0.730 31 H 0.404 0.596 32 H 0.203 0.797 33 H 0.167 0.833 34 H 0.053 0.947 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.095 0.905 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.079 0.921 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.647 5.280 10.137 20.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.163 4.163 3 C 0.158 3.842 4 H 0.066 0.934 5 C -0.570 4.570 6 H 0.062 0.938 7 C -0.170 4.170 8 N -0.573 5.573 9 Si 0.758 3.242 10 H -0.201 1.201 11 H -0.208 1.208 12 H -0.162 1.162 13 N -0.309 5.309 14 C 0.225 3.775 15 N -0.330 5.330 16 C 0.042 3.958 17 C -0.346 4.346 18 C 0.200 3.800 19 O -0.207 6.207 20 C 0.075 3.925 21 C -0.237 4.237 22 C -0.190 4.190 23 C -0.236 4.236 24 N -0.366 5.366 25 H 0.075 0.925 26 H 0.067 0.933 27 H 0.057 0.943 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.240 0.760 32 H 0.220 0.780 33 H 0.185 0.815 34 H 0.072 0.928 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.114 0.886 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.098 0.902 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -15.765 4.921 9.870 19.239 hybrid contribution 0.064 0.448 -0.200 0.495 sum -15.700 5.369 9.669 19.205 Atomic orbital electron populations 1.21709 0.95163 0.99744 1.01450 1.21988 0.95707 0.97975 1.00581 1.18892 0.92486 0.90050 0.82757 0.93373 1.21252 0.90776 1.50646 0.94334 0.93846 1.25702 0.95912 0.93638 1.01767 1.70009 1.11653 1.50342 1.25346 0.85939 0.80341 0.79335 0.78629 1.20057 1.20807 1.16222 1.44963 1.10792 1.57432 1.17719 1.19314 0.87551 0.86340 0.84304 1.68227 1.06144 1.27740 1.30908 1.23342 0.90571 0.85469 0.96383 1.21742 1.03814 1.14838 0.94200 1.20019 0.88020 0.85611 0.86384 1.86274 1.43228 1.71185 1.20014 1.21965 0.87443 0.96773 0.86325 1.22514 0.97668 0.99993 1.03546 1.21845 1.02572 1.00510 0.94114 1.22501 1.02178 0.95532 1.03350 1.67700 1.20887 1.22410 1.25622 0.92539 0.93293 0.94302 0.92820 0.93557 0.92106 0.76024 0.78004 0.81532 0.92777 0.90186 0.91370 0.91148 0.88645 0.91354 0.91215 0.90205 0.92522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.38 8.45 71.98 0.61 -3.77 16 2 C -0.12 -5.13 5.59 30.59 0.17 -4.96 16 3 C 0.26 12.06 1.89 44.24 0.08 12.14 16 4 H 0.05 2.31 4.65 -2.39 -0.01 2.30 16 5 C -0.53 -29.12 9.05 25.60 0.23 -28.89 16 6 H 0.04 2.61 8.06 -2.91 -0.02 2.58 16 7 C 0.03 1.68 5.47 84.65 0.46 2.14 16 8 N -0.93 -56.33 13.96 21.45 0.30 -56.03 16 9 Si 0.93 43.40 26.99 68.60 1.85 45.25 16 10 H -0.27 -12.74 7.11 99.48 0.71 -12.04 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 12 H -0.24 -10.35 6.82 99.48 0.68 -9.67 16 13 N -0.68 -28.28 5.16 -334.05 -1.72 -30.00 16 14 C 0.58 22.07 7.01 261.50 1.83 23.90 16 15 N -0.60 -21.31 6.39 -198.20 -1.27 -22.57 16 16 C 0.21 5.55 11.29 84.60 0.95 6.51 16 17 C -0.32 -8.23 10.12 22.55 0.23 -8.00 16 18 C 0.39 11.77 6.79 84.83 0.58 12.35 16 19 O -0.30 -8.25 9.79 -88.12 -0.86 -9.11 16 20 C 0.11 2.64 1.11 -10.79 -0.01 2.62 16 21 C -0.18 -4.55 8.35 71.98 0.60 -3.95 16 22 C -0.13 -2.21 8.84 71.98 0.64 -1.57 16 23 C -0.18 -4.30 8.35 71.98 0.60 -3.70 16 24 N -0.63 -21.41 4.81 -310.88 -1.49 -22.90 16 25 H 0.06 2.00 7.70 -2.39 -0.02 1.99 16 26 H 0.05 1.51 8.14 -2.39 -0.02 1.50 16 27 H 0.04 1.41 5.58 -2.39 -0.01 1.39 16 28 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 31 H 0.40 16.68 8.71 -92.70 -0.81 15.87 16 32 H 0.20 3.61 8.06 -2.91 -0.02 3.59 16 33 H 0.17 3.24 8.06 -2.91 -0.02 3.21 16 34 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 36 H 0.07 2.17 5.60 -2.38 -0.01 2.15 16 37 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 40 H 0.07 2.10 5.60 -2.39 -0.01 2.09 16 41 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -63.79 332.16 3.96 -59.82 By element: Atomic # 1 Polarization: 30.53 SS G_CDS: 0.18 Total: 30.71 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: 6.98 Total: 4.83 kcal Atomic # 7 Polarization: -127.32 SS G_CDS: -4.18 Total: -131.51 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: -0.86 Total: -9.11 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 1.85 Total: 45.25 kcal Total: -63.79 3.96 -59.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161053044.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.489 kcal (2) G-P(sol) polarization free energy of solvation -63.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds